genome.fa.s19.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  188  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57103006--57103142	62	2.2	60	84	5	168	37	18	9	35	1.83
57107989--57108035	21	2.4	19	85	7	58	46	17	23	12	1.82
57110602--57110673	31	2.5	30	82	10	87	31	2	5	59	1.35
57110895--57110944	22	2.3	22	79	6	57	22	12	4	62	1.46
57119804--57119837	13	2.6	13	85	0	50	32	35	20	11	1.89
57120765--57120834	21	3.3	21	84	4	88	45	15	24	14	1.83
57124110--57124186	3	25.3	3	75	7	66	59	2	5	32	1.33
57124133--57124193	29	2.1	30	84	9	81	60	3	3	32	1.29
57134552--57134582	13	2.5	13	94	5	55	35	12	9	41	1.76
57136527--57136578	20	2.4	22	76	20	56	61	1	7	28	1.34
57137252--57137285	14	2.5	14	95	4	61	14	0	35	50	1.44
57138555--57138625	33	2.2	33	89	0	106	38	12	4	45	1.62
57141785--57141813	15	1.9	15	100	0	58	10	55	13	20	1.68
57142881--57142911	16	1.9	16	93	0	53	32	0	0	67	0.91
57144745--57145274	266	2.0	266	96	0	988	32	18	25	23	1.97
57150247--57150987	132	5.6	132	94	0	1279	28	16	26	29	1.97
57151139--57151373	40	5.8	40	78	9	251	31	23	20	23	1.98
57151140--57151373	82	2.9	82	90	1	353	32	23	20	23	1.98
57151843--57151874	15	2.1	15	100	0	64	6	56	18	18	1.62
57152938--57152968	16	1.9	16	93	0	53	32	0	0	67	0.91
57155691--57155738	24	2.0	24	83	0	60	37	16	25	20	1.93
57157878--57158008	50	2.6	50	88	0	181	25	19	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57159441--57159480	21	1.9	21	100	0	80	42	0	27	30	1.56
57159530--57159601	29	2.5	29	97	2	137	33	0	43	23	1.54
57164683--57164760	9	8.2	10	72	18	60	65	0	1	33	1.01
57164719--57164813	30	3.2	30	80	7	95	60	3	1	35	1.20
57165002--57165091	10	9.2	10	69	12	53	28	4	3	63	1.30
57165056--57165082	10	2.7	10	100	0	54	18	7	7	66	1.40
57165079--57165150	29	2.5	29	81	4	92	37	2	1	58	1.21
57165238--57165490	86	2.8	86	82	6	274	33	10	20	35	1.88
57166226--57166258	16	2.1	16	88	11	50	63	0	27	9	1.24
57171216--57171261	23	2.0	23	100	0	92	69	13	13	4	1.33
57175381--57175420	21	1.9	21	89	0	62	75	0	17	7	1.03
57181295--57181354	32	1.9	32	83	12	81	25	5	8	61	1.44
57181297--57181370	29	2.4	31	76	10	73	25	5	8	60	1.46
57181765--57181798	17	1.9	18	88	5	52	32	8	0	58	1.29
57184898--57184933	18	2.1	17	89	5	54	41	2	13	41	1.59
57186135--57186197	30	2.1	30	93	0	108	58	15	1	23	1.46
57186226--57186274	22	2.2	22	85	0	71	61	8	8	22	1.51
57186235--57186284	22	2.3	22	82	6	57	60	6	14	20	1.55
57193322--57193361	18	2.2	18	95	0	71	45	22	5	27	1.73
57193450--57193531	30	2.8	29	85	10	105	56	0	2	41	1.13
57193450--57193541	9	9.1	10	72	17	66	55	0	2	42	1.12
57193463--57193591	38	3.3	38	90	4	204	61	0	3	35	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57195947--57195995	23	2.1	23	92	0	80	24	14	18	42	1.87
57197916--57197966	20	2.8	17	76	21	50	15	11	1	70	1.25
57198521--57198593	3	25.0	3	86	5	105	31	2	1	64	1.16
57198894--57198931	6	6.3	6	100	0	76	50	0	15	34	1.45
57211445--57211475	9	3.4	9	90	0	53	25	12	22	38	1.90
57213383--57213433	15	3.3	15	76	10	57	68	0	5	25	1.12
57213480--57213505	3	8.7	3	100	0	52	69	0	0	30	0.89
57213539--57213586	20	2.3	20	79	10	53	64	4	10	20	1.41
57214909--57214934	5	5.2	5	100	0	52	19	19	19	42	1.90
57216235--57216318	25	3.4	25	78	1	62	33	22	28	15	1.95
57216247--57216331	25	3.4	24	80	6	98	31	22	29	16	1.96
57216260--57216412	25	6.2	25	69	13	95	37	18	24	19	1.94
57217687--57217744	29	2.0	29	93	0	98	55	6	5	32	1.49
57219226--57219770	245	2.2	244	85	4	728	41	14	13	31	1.84
57219716--57219832	62	1.9	62	96	0	216	44	12	17	25	1.84
57223088--57223248	79	2.0	79	100	0	322	37	16	13	32	1.87
57223614--57223649	16	2.2	16	95	0	63	27	0	0	72	0.85
57226848--57226897	16	3.4	16	71	21	54	48	16	14	22	1.81
57226847--57226910	28	2.3	28	88	0	101	48	15	12	23	1.79
57227513--57227656	63	2.3	62	81	3	180	27	27	20	24	1.99
57230526--57230573	20	2.5	19	77	12	53	60	0	10	29	1.30
57232447--57232481	13	2.7	13	95	0	61	25	48	22	2	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57233075--57233119	22	2.0	22	82	0	54	35	20	8	35	1.84
57233961--57234027	35	1.9	34	82	8	82	5	19	1	73	1.12
57245459--57245520	30	2.1	29	93	3	106	30	1	0	67	1.00
57245506--57245579	11	7.3	11	73	23	65	39	2	0	58	1.13
57245491--57245568	37	2.1	37	97	0	147	37	2	0	60	1.11
57253691--57253784	26	3.6	26	81	11	95	26	24	17	31	1.97
57257745--57257787	17	2.4	18	80	7	52	62	0	2	34	1.08
57267544--57267578	13	2.8	12	87	8	52	68	0	0	31	0.90
57268774--57268837	30	2.1	32	85	5	87	43	3	4	48	1.39
57269341--57269371	5	6.2	5	96	0	53	35	0	3	61	1.12
57275873--57275915	10	4.3	10	77	11	52	20	4	18	55	1.60
57275873--57275920	21	2.3	22	82	10	64	20	4	16	58	1.55
57277004--57277038	18	2.0	17	88	5	52	54	0	0	45	0.99
57277141--57277175	15	2.2	16	90	5	54	51	0	0	48	1.00
57280391--57280445	28	2.0	28	92	0	92	63	5	29	1	1.27
57284563--57284615	21	2.5	21	84	9	63	62	5	0	32	1.19
57287597--57287694	48	2.0	48	92	0	160	48	8	19	23	1.75
57293346--57293379	17	2.0	17	88	0	50	35	0	20	44	1.52
57298423--57298464	22	2.0	21	86	9	59	42	16	0	40	1.48
57305514--57305551	16	2.4	16	90	0	58	31	0	34	34	1.58
57305530--57305624	45	2.1	44	86	1	127	35	5	26	32	1.79
57305786--57305820	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57305744--57305816	27	2.7	27	76	8	76	52	2	0	45	1.15
57305705--57305979	147	1.9	149	95	1	500	46	3	3	46	1.35
57305953--57306131	55	3.1	53	64	22	117	49	6	2	41	1.41
57305916--57306208	120	2.4	120	90	2	464	50	4	2	42	1.36
57306053--57306100	18	2.8	18	78	12	57	58	0	0	41	0.98
57306163--57306194	16	1.9	17	93	6	57	46	0	0	53	1.00
57306224--57306431	91	2.3	91	85	4	258	46	3	4	45	1.41
57310391--57310418	12	2.3	12	100	0	56	35	25	25	14	1.93
57311020--57311064	22	2.0	22	91	0	72	33	2	15	48	1.57
57314793--57314837	22	2.0	22	91	0	72	33	2	15	48	1.57
57316462--57316512	24	2.1	24	96	0	93	33	5	23	37	1.79
57323346--57323419	3	24.7	3	100	0	148	67	0	32	0	0.91
57328724--57328786	20	3.1	20	64	28	51	39	11	4	44	1.61
57329488--57329533	15	3.1	15	76	17	51	23	10	19	45	1.82
57332387--57332531	47	3.2	46	68	16	120	44	2	4	48	1.38
57332368--57332575	91	2.3	91	88	2	301	45	3	3	46	1.39
57332580--57333000	54	7.1	56	65	22	177	42	2	4	50	1.35
57332629--57332956	66	5.3	63	66	22	214	42	3	5	49	1.41
57332591--57333003	120	3.4	120	95	1	731	42	2	4	50	1.37
57332716--57332767	15	3.6	15	80	12	56	44	0	1	53	1.11
57332836--57332887	15	3.6	15	80	12	56	44	0	1	53	1.11
57332965--57333006	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57332956--57332997	15	2.9	15	82	10	52	47	0	0	52	1.00
57332940--57333249	157	2.0	157	98	0	593	47	4	2	44	1.39
57333109--57333143	18	2.0	17	88	5	52	45	0	0	54	0.99
57332941--57333179	75	3.1	75	64	18	191	46	3	3	46	1.35
57333289--57333398	45	2.6	44	77	8	113	31	27	5	35	1.80
57333431--57333524	43	2.2	43	84	5	120	21	28	10	39	1.87
57336611--57336666	18	3.1	18	74	20	53	19	5	5	69	1.28
57336763--57336796	15	2.3	15	89	0	50	17	14	8	58	1.61
57338613--57338639	12	2.2	12	100	0	54	14	7	29	48	1.71
57340897--57340988	46	2.1	43	88	11	136	32	14	22	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207