genome.fa.s19.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  162  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49906314--49906535	33	6.4	33	68	24	116	33	28	18	20	1.96
49906337--49906567	102	2.3	102	90	0	363	31	28	19	21	1.97
49906483--49906566	27	2.9	27	85	10	96	33	29	19	17	1.95
49913221--49913395	85	2.1	85	95	0	314	23	14	20	41	1.89
49916400--49916640	49	4.9	49	84	3	324	31	15	9	43	1.79
49916400--49916640	98	2.5	98	96	1	439	31	15	9	43	1.79
49921012--49921140	49	2.6	49	85	7	172	29	11	12	46	1.77
49922078--49922112	17	2.1	17	88	0	52	65	11	5	17	1.43
49923752--49923795	14	3.1	14	90	3	61	27	20	25	27	1.99
49924104--49924144	18	2.3	18	87	4	57	29	12	39	19	1.88
49926478--49926533	27	2.1	27	96	0	103	44	10	16	28	1.80
49927341--49927378	6	6.3	6	100	0	76	34	15	18	31	1.92
49928903--49928969	14	4.5	14	75	12	53	47	1	7	43	1.40
49929227--49929268	20	2.0	20	86	9	57	38	4	21	35	1.75
49930030--49930072	19	2.3	19	83	0	50	20	16	27	34	1.94
49930040--49930076	19	1.9	19	94	0	65	16	21	27	35	1.94
49930049--49930122	19	3.9	19	85	0	85	21	29	24	24	1.99
49932058--49932258	68	3.0	66	74	13	198	41	4	4	49	1.43
49932130--49932246	62	1.9	59	87	5	171	43	4	2	49	1.35
49935560--49935620	25	2.4	25	78	10	63	39	3	1	55	1.26
49942377--49942420	17	2.6	17	88	0	61	36	25	6	31	1.82
49943932--49943974	20	2.2	20	87	4	61	30	13	0	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49944033--49944076	17	2.6	16	82	10	52	25	2	2	70	1.10
49944050--49944086	15	2.3	17	86	9	51	21	5	5	67	1.31
49944113--49944157	20	2.2	20	92	0	72	22	2	4	71	1.15
49944122--49944166	20	2.2	20	88	0	63	28	2	4	64	1.25
49944910--49945002	38	2.3	40	85	10	136	60	1	0	38	1.04
49944910--49945012	40	2.6	40	86	9	147	57	0	0	41	1.05
49947143--49947167	6	4.2	6	100	0	50	16	0	68	16	1.22
49947870--49947924	27	2.1	26	80	16	60	41	1	5	50	1.36
49953422--49953468	15	3.1	16	80	17	55	17	44	2	36	1.60
49959331--49959628	50	5.9	50	78	3	238	22	26	21	29	1.99
49959967--49960024	30	1.9	30	89	3	89	36	24	5	34	1.78
49963123--49963180	20	2.9	20	89	5	91	32	1	5	60	1.29
49969432--49969460	15	1.9	15	100	0	58	34	27	6	31	1.83
49974329--49974369	21	2.0	21	85	0	55	41	14	14	29	1.86
49977239--49977427	93	2.0	93	91	2	308	32	15	14	37	1.88
49982268--49982299	17	1.9	16	93	6	55	78	0	15	6	0.95
49988627--49988717	45	2.0	44	85	2	119	31	5	27	35	1.80
49988863--49988904	15	2.7	16	82	14	52	52	2	0	45	1.13
49988872--49988913	15	2.9	15	82	10	52	52	0	0	47	1.00
49988861--49989182	107	3.0	107	97	1	601	49	5	1	43	1.37
49989073--49989118	16	2.9	16	78	12	51	52	2	0	45	1.13
49989073--49989127	15	3.7	15	79	13	53	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49989190--49989526	91	3.5	95	80	14	376	48	2	2	46	1.30
49989233--49989500	47	5.9	44	70	19	167	47	2	2	47	1.33
49989292--49989526	44	5.2	43	71	15	197	48	2	2	47	1.27
49989267--49989525	91	2.8	91	97	0	473	46	2	3	47	1.30
49988966--49989382	220	1.9	225	83	8	559	48	4	2	44	1.36
49990522--49990557	17	2.1	17	100	0	72	41	16	0	41	1.48
49996443--49996531	41	2.1	43	85	4	119	43	7	5	42	1.57
49996623--49996678	27	2.1	27	93	0	94	41	8	14	35	1.77
49997927--49997983	30	1.9	30	92	0	96	43	8	0	47	1.34
49999157--49999207	3	17.7	3	78	8	52	25	1	3	68	1.17
49999149--49999210	28	2.2	28	85	5	81	24	1	3	70	1.10
50009169--50009288	45	2.7	44	82	10	136	33	22	15	28	1.95
50011102--50011142	20	2.0	20	90	0	64	29	0	4	65	1.13
50020298--50020345	5	9.6	5	100	0	96	39	0	0	60	0.97
50028466--50028644	44	4.1	44	92	0	286	49	11	9	29	1.70
50028552--50028622	21	3.3	21	64	21	56	52	15	4	28	1.61
50038515--50039436	459	2.0	459	97	0	1736	27	16	26	29	1.97
50040545--50040632	44	2.0	45	84	2	115	39	4	5	50	1.47
50043981--50044149	59	2.8	60	87	0	232	43	10	4	41	1.60
50044314--50044352	6	6.5	6	82	11	53	51	0	5	43	1.24
50047350--50047394	8	6.0	8	82	10	51	64	2	6	26	1.30
50047345--50047388	21	2.2	20	87	4	61	65	2	4	27	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50048967--50049236	94	2.9	94	78	5	267	29	16	18	35	1.93
50049077--50049917	44	18.6	44	71	12	411	29	19	17	33	1.94
50049168--50049502	133	2.5	131	79	6	354	31	18	16	33	1.93
50049567--50049918	90	3.9	89	79	8	315	28	20	16	34	1.94
50056716--50056806	40	2.3	40	78	3	103	31	18	24	25	1.97
50056889--50056993	14	7.4	14	73	2	66	22	0	30	45	1.59
50057542--50057619	41	2.0	39	90	7	122	53	5	3	37	1.41
50057689--50057954	126	2.1	123	80	4	293	33	15	19	31	1.93
50058057--50058097	20	2.0	20	95	0	73	24	43	0	31	1.54
50058653--50058750	41	2.4	42	84	5	119	17	18	28	35	1.93
50058653--50058761	42	2.6	40	81	4	110	19	21	27	32	1.97
50058784--50058830	16	2.8	16	93	6	76	27	0	8	63	1.23
50059065--50059113	14	3.4	15	83	11	66	24	2	24	48	1.61
50059109--50059261	7	21.7	7	74	11	80	23	0	33	41	1.59
50059213--50059304	43	2.1	43	86	4	123	20	1	34	43	1.59
50059205--50059286	36	2.3	36	79	6	87	19	1	34	45	1.58
50062367--50062483	57	2.1	57	100	0	234	20	11	13	53	1.71
50063791--50063935	74	1.9	75	88	4	222	28	10	18	42	1.83
50063900--50064088	43	4.4	43	80	4	186	19	20	29	31	1.96
50063922--50064085	43	3.9	42	86	2	204	20	20	29	28	1.98
50064168--50064211	22	2.0	22	95	0	79	43	22	20	13	1.87
50064832--50064934	52	2.0	52	82	3	127	17	12	20	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50066014--50066076	18	3.3	18	88	6	72	47	17	0	34	1.48
50066041--50066229	56	3.3	56	84	10	254	43	20	0	35	1.56
50066024--50066217	61	3.3	60	85	9	256	43	19	0	36	1.55
50066032--50066274	9	27.0	9	72	12	153	43	18	1	36	1.59
50072050--50072173	43	2.9	43	88	0	176	33	20	20	25	1.97
50072050--50072196	43	3.4	43	85	2	163	33	21	19	25	1.97
50072514--50072565	20	2.6	19	82	11	59	67	1	3	26	1.18
50072514--50072565	24	2.2	24	86	6	72	67	1	3	26	1.18
50086837--50086884	17	2.9	17	90	3	71	27	0	18	54	1.44
50088093--50088277	46	4.0	46	93	0	307	36	9	25	28	1.88
50091064--50091093	15	1.9	16	93	6	53	70	0	30	0	0.88
50092773--50092814	21	2.0	21	100	0	84	47	14	9	28	1.75
50093752--50093776	13	1.9	13	100	0	50	40	24	4	32	1.73
50100309--50100350	21	2.0	21	100	0	84	47	14	9	28	1.75
50109068--50109109	15	2.5	17	82	14	52	57	7	2	33	1.39
50115975--50116015	22	1.9	21	85	5	55	58	0	2	39	1.11
50118714--50118751	19	2.0	19	89	0	58	31	10	26	31	1.90
50123356--50123423	19	3.6	19	89	0	100	33	33	4	27	1.77
50123347--50123424	19	4.1	19	86	0	93	35	34	5	24	1.78
50124692--50124807	37	3.1	38	82	2	153	37	29	18	14	1.91
50126408--50126476	18	3.8	19	74	16	65	72	0	24	2	0.98
50127673--50127712	17	2.4	17	86	0	53	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50129527--50129569	19	2.3	19	84	8	52	65	0	2	32	1.06
50129542--50129575	17	1.9	18	88	5	52	70	0	2	26	1.01
50134597--50134643	20	2.4	19	82	10	58	42	6	8	42	1.60
50144013--50144058	22	2.3	19	82	14	56	21	6	0	71	1.08
50144014--50144060	20	2.2	22	88	7	71	21	6	0	72	1.07
50144020--50144065	6	7.2	6	83	13	56	21	2	0	76	0.90
50152089--50152155	25	2.7	25	82	11	75	34	22	25	17	1.96
50152110--50152310	25	7.8	25	70	12	99	33	21	26	18	1.97
50152121--50152305	103	1.8	102	85	5	266	34	20	26	18	1.96
50163584--50163641	25	2.3	24	80	8	62	31	22	24	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207