genome.fa.s19.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  102  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30570880--30571298	107	4.0	106	86	4	587	30	18	17	32	1.95
30582044--30582161	27	4.2	26	71	20	78	50	5	2	40	1.40
30582092--30582171	8	10.1	8	79	15	78	51	8	0	40	1.33
30582063--30582184	55	2.2	58	91	7	198	50	8	1	39	1.42
30582057--30582182	47	2.7	46	76	21	129	50	7	1	40	1.39
30586452--30586615	57	2.9	57	84	4	199	40	17	4	37	1.71
30588078--30588122	18	2.5	19	76	16	51	68	6	2	22	1.24
30588405--30588433	14	2.0	15	93	6	51	68	0	0	31	0.89
30599337--30599423	45	1.9	45	95	0	156	33	25	17	24	1.96
30599427--30599622	51	3.9	51	79	5	227	29	28	18	23	1.98
30599434--30599618	101	1.8	102	91	3	311	29	28	18	23	1.98
30605277--30605306	16	1.9	15	93	6	51	46	6	0	46	1.29
30610334--30610389	27	2.1	27	86	0	76	58	5	3	32	1.37
30620716--30620760	17	2.9	16	84	12	58	51	2	4	42	1.34
30623084--30623132	16	2.9	17	79	14	57	40	2	2	55	1.23
30627256--30627307	10	5.4	10	77	6	54	25	0	1	73	0.94
30627240--30627298	11	5.5	11	77	4	59	28	0	3	67	1.06
30627256--30627307	19	2.7	19	81	3	59	25	0	1	73	0.94
30635343--30635390	17	2.7	18	74	9	53	72	4	8	14	1.23
30637158--30637223	31	2.1	31	91	0	105	50	0	6	43	1.27
30637173--30637231	16	3.8	16	69	13	59	49	0	6	44	1.29
30638034--30638111	39	2.0	39	94	0	138	41	12	12	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30638462--30638494	17	1.9	17	100	0	66	39	6	0	54	1.25
30643048--30643075	10	2.8	10	100	0	56	50	0	7	42	1.30
30643577--30643896	96	3.3	96	88	2	484	39	17	1	41	1.60
30646087--30646128	16	2.6	16	85	11	59	42	0	0	57	0.99
30646142--30646200	17	3.1	18	72	27	59	44	1	0	54	1.10
30646152--30646195	22	2.0	22	86	0	61	40	2	0	56	1.11
30646251--30646276	9	2.9	9	100	0	52	42	0	0	57	0.98
30651576--30651858	30	9.5	29	72	13	159	21	26	13	38	1.90
30651574--30651739	89	1.9	89	92	2	280	21	27	11	40	1.87
30651567--30651829	30	8.8	30	74	9	207	20	26	13	38	1.90
30651698--30651867	89	1.9	90	85	3	236	20	26	14	38	1.91
30651576--30651858	149	1.9	149	91	1	469	21	26	13	38	1.90
30655353--30655387	18	1.9	18	88	0	52	22	40	0	37	1.55
30661065--30661315	59	4.2	59	71	12	181	21	26	13	38	1.91
30661113--30661167	29	2.1	24	81	18	58	16	29	12	41	1.85
30661065--30661362	30	10.1	29	70	11	169	20	25	15	38	1.92
30661065--30661332	89	3.0	89	90	1	412	21	26	14	38	1.92
30661307--30661371	29	2.6	23	72	25	67	15	24	16	43	1.87
30671475--30671517	17	2.5	17	96	0	77	16	11	9	62	1.53
30675093--30675129	19	1.9	19	88	0	56	48	27	0	24	1.51
30687583--30687608	12	2.2	12	100	0	52	38	38	15	7	1.76
30692713--30692821	42	2.6	42	83	2	139	26	33	21	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30694226--30694418	50	3.9	50	83	1	199	27	21	29	20	1.98
30696088--30696123	13	2.8	13	95	0	63	16	36	19	27	1.93
30699260--30699414	57	3.1	47	76	19	159	31	14	25	28	1.95
30699338--30699369	7	4.6	7	96	0	55	40	9	31	18	1.83
30699395--30699435	7	5.9	7	88	0	64	43	12	29	14	1.82
30699248--30699427	58	3.3	57	82	11	211	32	14	26	26	1.95
30705000--30705235	50	4.9	50	78	7	229	26	21	30	21	1.98
30710160--30710198	20	2.0	20	90	10	62	15	23	7	53	1.67
30710495--30710637	50	2.7	52	82	8	164	24	30	19	25	1.98
30717635--30717761	49	2.6	49	80	7	134	25	26	19	28	1.99
30729538--30729801	40	6.7	40	86	5	331	25	28	21	25	1.99
30735699--30735767	35	2.0	35	91	0	111	30	17	23	28	1.97
30736286--30736349	27	2.3	28	86	7	87	31	18	17	32	1.94
30736254--30736349	28	3.5	27	79	11	97	31	18	19	30	1.96
30739891--30739965	27	2.8	28	70	13	75	28	20	16	36	1.93
30747027--30747065	12	3.2	12	85	0	51	20	23	5	51	1.67
30747316--30747504	50	3.8	50	79	5	202	22	29	20	28	1.98
30750965--30750999	9	3.9	9	88	0	52	51	2	0	45	1.16
30755341--30755395	28	2.0	28	85	0	74	23	23	23	29	1.99
30762402--30762608	27	7.3	27	78	9	198	43	19	20	16	1.88
30762428--30762558	63	2.1	63	89	2	201	47	16	19	16	1.83
30762409--30762585	90	2.0	90	87	0	255	45	17	19	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30765260--30766263	411	2.4	409	80	5	1116	30	13	23	32	1.93
30768170--30768241	21	3.4	21	75	7	83	13	29	18	38	1.89
30768131--30768256	42	3.0	42	86	0	162	16	26	17	38	1.91
30768131--30768275	42	3.5	42	84	0	155	16	25	17	40	1.91
30771947--30772008	21	3.0	21	65	9	54	16	27	17	38	1.91
30771880--30772030	42	3.6	42	80	0	158	16	24	17	41	1.89
30773666--30773739	24	3.2	24	66	14	66	51	4	5	39	1.44
30773645--30773739	44	2.1	47	90	5	151	49	3	8	38	1.49
30783062--30783243	98	1.9	98	86	4	260	46	3	2	46	1.35
30783298--30783336	13	2.9	13	88	3	51	61	2	0	35	1.10
30783522--30783562	14	2.8	15	81	7	57	58	0	7	34	1.26
30784222--30784299	39	2.0	39	100	0	156	41	25	7	25	1.82
30787247--30788347	549	2.0	549	97	0	2087	36	15	16	31	1.90
30789490--30789625	39	3.5	39	87	0	182	46	22	2	27	1.66
30797923--30798030	46	2.4	43	80	13	121	35	23	17	24	1.95
30798032--30798226	51	3.8	51	78	8	218	30	28	16	23	1.97
30798030--30798218	101	1.9	102	84	3	247	30	27	17	24	1.97
30828855--30828912	28	2.1	28	96	0	107	12	43	5	39	1.64
30834865--30834932	16	4.2	16	96	0	127	26	0	35	38	1.57
30835168--30835202	18	2.0	17	88	5	52	54	0	0	45	0.99
30835055--30835339	157	1.8	157	95	0	516	43	3	5	48	1.41
30835305--30835339	15	2.2	16	90	5	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30838556--30838610	28	2.0	28	92	0	92	63	5	29	1	1.27
30843360--30843404	22	2.0	22	100	0	90	4	13	24	57	1.54
30848661--30849011	176	2.0	176	91	0	567	33	15	23	27	1.95
30853528--30853711	92	2.0	92	97	0	350	41	5	3	49	1.43
30856271--30856617	123	2.8	123	93	0	586	28	16	21	33	1.95
30856268--30856613	125	2.8	125	93	0	588	28	16	21	33	1.95
30861220--30861272	23	2.4	22	78	6	61	45	3	13	37	1.61
30861220--30861263	23	2.0	23	86	4	63	45	4	13	36	1.64
30862669--30862781	27	4.2	27	79	4	111	24	23	22	30	1.99
30872788--30872832	16	2.8	16	93	3	72	35	11	8	44	1.71
30885794--30885836	20	2.2	20	91	0	68	34	25	25	13	1.93
30890857--30890923	14	4.3	15	78	10	64	47	7	17	26	1.74
30898512--30898543	15	2.1	15	100	0	64	40	12	12	34	1.81
30898909--30898971	25	2.5	25	76	19	76	31	20	19	28	1.97
30905702--30905755	23	2.4	22	78	12	56	27	1	27	42	1.66
30907345--30907537	50	3.7	50	82	4	215	26	22	27	22	1.99
30907352--30907537	100	1.8	103	82	6	243	27	22	28	22	1.99
30907786--30907824	12	3.2	12	85	0	51	51	5	23	20	1.67
30914479--30914569	25	3.7	25	71	17	73	27	23	23	26	2.00
30955842--30955902	22	2.5	24	82	10	63	44	6	3	45	1.46
30955858--30955912	26	2.2	24	84	12	67	41	7	5	45	1.55
30956286--30956322	19	1.9	19	88	0	56	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30958176--30958239	30	2.1	31	82	2	76	53	10	3	32	1.52
30963525--30963566	19	2.3	19	95	4	77	26	19	35	19	1.95
30968255--30968290	17	2.1	17	94	0	63	25	33	5	36	1.79
30969111--30969227	35	3.3	35	76	4	128	26	23	23	26	2.00
30971952--30972053	50	2.1	49	88	1	150	30	8	12	48	1.72
30973199--30973343	71	2.1	70	82	1	173	20	16	27	35	1.94
30976021--30976056	18	2.0	18	94	0	63	22	30	0	47	1.52
30976026--30976069	18	2.4	18	85	7	54	20	29	2	47	1.62
30989021--30989164	50	2.9	48	80	5	155	22	29	20	26	1.99
30989023--30989217	49	3.8	50	80	6	196	24	28	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207