genome.fa.s19.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  161  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49614729--49614774	23	2.1	23	88	8	69	58	0	0	41	0.98
49622281--49622646	43	8.5	43	83	1	428	28	29	18	23	1.98
49623025--49623172	66	2.2	66	87	2	208	16	25	17	40	1.90
49626654--49626703	9	6.0	9	77	17	54	32	0	20	48	1.50
49626656--49626714	16	3.7	16	88	0	91	30	1	18	49	1.58
49626924--49626972	23	2.1	25	82	14	61	44	0	20	34	1.52
49626939--49627102	69	2.4	69	86	0	238	43	5	7	42	1.57
49627692--49627748	26	2.2	26	93	0	96	43	3	14	38	1.62
49630040--49630088	7	6.9	7	88	4	71	30	51	0	18	1.47
49630052--49630101	21	2.4	21	86	0	64	30	48	0	22	1.51
49631029--49631186	41	3.8	41	75	9	142	36	27	17	18	1.93
49631029--49631251	41	5.4	40	72	10	128	38	26	16	17	1.91
49631029--49631186	83	1.9	83	87	3	230	36	27	17	18	1.93
49639981--49640023	14	3.0	14	83	10	52	74	0	13	11	1.07
49641273--49641761	131	3.8	129	89	3	727	29	19	24	26	1.98
49641873--49642095	44	4.9	44	70	14	164	33	18	20	27	1.96
49641776--49642158	142	2.7	142	93	1	617	33	16	20	28	1.95
49642015--49642107	43	2.1	44	86	2	125	30	20	23	25	1.99
49642234--49642543	50	6.2	49	73	4	244	35	22	18	23	1.96
49642205--49642510	100	3.1	100	88	0	452	33	23	18	23	1.97
49645919--49646023	44	2.3	47	83	4	135	13	36	7	42	1.73
49647872--49647900	13	2.2	13	100	0	58	34	13	24	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49650344--49650368	13	1.9	13	100	0	50	56	4	0	40	1.18
49650370--49650436	35	1.9	35	93	0	116	44	11	5	37	1.66
49650457--49650542	36	2.4	36	88	0	127	46	16	2	34	1.60
49652169--49652268	49	2.0	49	90	3	157	22	8	32	38	1.83
49655538--49655573	18	2.0	18	89	10	56	22	27	8	41	1.82
49661389--49661431	13	3.1	14	84	12	54	60	0	0	39	0.97
49664194--49664245	23	2.1	25	82	10	63	55	1	0	42	1.10
49664226--49664258	16	2.1	16	94	0	57	60	0	0	39	0.97
49667569--49667608	21	2.0	21	85	5	55	37	12	7	42	1.71
49670226--49670288	18	3.5	18	79	12	67	50	15	9	23	1.73
49670308--49670410	34	3.0	34	81	8	95	43	18	7	30	1.78
49670320--49670410	17	5.4	17	79	7	78	45	19	6	28	1.76
49670362--49670423	17	3.7	16	80	4	52	45	24	4	25	1.73
49670354--49670423	34	2.1	34	83	5	88	45	22	5	25	1.74
49671384--49671449	35	1.9	33	82	11	80	48	13	3	34	1.58
49674196--49674229	5	7.0	5	86	6	52	79	2	17	0	0.86
49674196--49674229	14	2.3	15	90	5	52	79	2	17	0	0.86
49675607--49676004	198	2.0	198	97	0	742	25	17	17	39	1.91
49676514--49676609	42	2.3	42	81	3	113	21	23	31	22	1.99
49692792--49692820	13	2.2	13	100	0	58	48	17	6	27	1.72
49699349--49699542	101	1.9	100	82	5	239	39	6	17	37	1.74
49701119--49701181	32	2.0	32	84	6	83	61	4	9	23	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49702014--49702071	28	2.1	27	84	9	73	24	3	17	55	1.57
49704390--49704448	31	1.9	31	92	0	100	40	5	6	47	1.52
49711625--49711908	125	2.3	125	88	0	433	32	17	19	29	1.95
49715107--49715423	49	6.5	49	94	0	544	44	9	2	43	1.50
49715151--49715234	29	3.2	29	62	28	78	45	9	2	42	1.49
49717704--49717752	22	2.2	22	82	10	64	48	0	28	22	1.50
49717704--49717752	11	4.5	10	78	16	53	48	0	28	22	1.50
49724052--49724077	5	5.2	5	100	0	52	42	19	19	19	1.90
49724559--49724587	9	3.2	9	100	0	58	68	0	0	31	0.89
49724842--49724901	30	2.0	31	83	9	79	41	0	38	20	1.52
49725115--49725151	9	4.1	9	92	0	65	29	10	13	45	1.77
49734468--49734596	69	1.9	69	90	1	206	40	4	4	50	1.44
49734496--49734599	32	3.1	32	70	13	84	40	3	6	49	1.48
49738457--49738484	5	5.6	5	100	0	56	82	0	0	17	0.68
49749401--49749559	38	4.1	38	80	5	140	15	21	30	33	1.94
49749496--49749583	41	2.1	41	82	0	113	17	20	27	35	1.94
49751084--49751122	18	2.1	19	90	4	62	53	7	5	33	1.51
49751433--49751462	14	2.1	14	93	0	51	3	20	50	26	1.64
49751534--49751644	37	3.0	36	78	11	102	40	3	4	51	1.40
49756853--49756878	9	2.9	9	100	0	52	34	0	34	30	1.58
49760825--49760858	15	2.3	15	89	0	50	14	0	5	79	0.91
49778569--49778764	97	2.0	98	92	1	331	38	23	9	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49779309--49779475	52	3.2	50	69	18	133	48	4	12	34	1.62
49779527--49779568	20	2.1	20	100	0	84	61	0	4	33	1.17
49780805--49780921	44	2.7	42	78	15	105	29	22	18	29	1.97
49780847--49781180	44	7.7	43	72	8	189	27	20	20	31	1.97
49781205--49781384	44	4.1	44	65	16	120	30	23	17	28	1.97
49781205--49782328	132	8.5	132	93	0	1896	28	23	19	28	1.98
49781216--49782316	44	25.1	44	61	15	114	28	23	19	28	1.98
49782263--49782390	62	2.1	62	95	0	229	31	14	21	32	1.93
49787562--49787758	98	2.0	98	96	0	367	38	24	9	27	1.86
49788287--49788486	106	1.9	108	85	7	282	50	5	10	34	1.60
49788735--49788773	20	1.9	21	84	5	53	69	0	5	25	1.09
49794000--49794049	16	2.9	18	74	17	52	12	4	12	72	1.26
49797949--49797995	23	2.0	23	91	0	76	27	25	29	17	1.97
49802474--49802520	23	2.0	23	91	0	76	27	25	29	17	1.97
49810751--49810878	63	2.0	63	100	0	256	46	7	9	37	1.64
49810912--49810977	32	2.0	33	85	8	89	60	6	9	24	1.49
49812511--49812613	51	2.0	51	100	0	206	43	11	13	31	1.80
49812669--49812744	39	2.0	37	94	5	134	47	2	15	34	1.60
49820243--49820276	17	2.0	18	88	11	54	47	0	11	41	1.40
49828062--49828098	19	1.9	19	88	0	56	59	2	8	29	1.40
49828451--49828475	4	6.2	4	100	0	50	52	0	24	24	1.48
49828473--49828533	26	2.5	25	84	7	72	63	3	3	29	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49828972--49829005	5	6.8	5	90	10	52	82	2	14	0	0.79
49828972--49829022	24	2.1	25	82	17	63	82	3	11	1	0.89
49828972--49829014	19	2.3	18	84	11	59	83	2	11	2	0.83
49830012--49830237	44	5.2	44	71	10	158	27	26	19	26	1.99
49830206--49831473	129	9.9	129	91	1	1906	24	23	19	32	1.98
49830210--49831473	514	2.5	516	90	1	1950	24	23	19	32	1.98
49832696--49832755	21	3.3	17	75	20	59	15	10	1	73	1.17
49832712--49832753	7	5.9	7	83	13	50	16	9	2	71	1.23
49832694--49832754	31	2.0	31	83	3	79	16	11	1	70	1.24
49833624--49833698	6	12.7	6	84	2	62	13	8	8	70	1.32
49833624--49833704	29	2.8	29	78	1	81	12	7	8	71	1.30
49833636--49833703	35	2.0	34	85	2	91	11	5	8	73	1.24
49837934--49837970	19	1.9	19	88	0	56	59	2	8	29	1.40
49838329--49838357	4	7.2	4	100	0	58	51	0	24	24	1.48
49838355--49838415	26	2.5	25	84	7	72	63	3	3	29	1.26
49838820--49838853	5	6.6	5	93	6	59	82	0	0	17	0.67
49838819--49838853	16	2.2	16	100	0	70	82	0	0	17	0.66
49848489--49848525	19	1.9	19	88	0	56	37	0	2	59	1.12
49854813--49854876	13	4.9	13	86	0	83	32	6	26	34	1.82
49855493--49855518	12	2.2	12	100	0	52	23	42	7	26	1.81
49856928--49857166	72	3.3	72	91	0	372	55	14	4	25	1.58
49860445--49860469	12	2.1	12	100	0	50	52	16	16	16	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49863060--49863142	3	27.7	3	100	0	166	33	0	32	33	1.58
49864039--49864144	53	2.0	53	98	0	203	40	5	19	33	1.75
49866165--49866210	17	2.8	18	84	15	64	28	41	30	0	1.56
49872902--49873088	51	3.7	51	81	2	207	27	16	26	30	1.96
49876549--49876600	27	1.9	27	84	7	70	46	7	0	46	1.31
49878253--49878437	79	2.3	82	82	7	220	24	27	23	25	2.00
49878234--49878437	40	5.1	40	80	8	220	24	26	23	25	2.00
49882846--49882936	44	2.1	44	87	4	130	31	10	9	47	1.72
49898856--49899059	102	2.0	102	91	0	327	30	26	19	23	1.98
49899390--49899446	30	1.9	30	85	0	78	33	17	7	42	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207