genome.fa.s19.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  18  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5348478--5348822	120	2.9	120	96	1	613	43	3	5	47	1.41
5348768--5348802	18	2.0	17	88	5	52	45	0	0	54	0.99
5348958--5349055	45	2.2	44	82	10	119	34	26	5	33	1.79
5349035--5349067	16	2.1	16	94	0	57	21	39	3	36	1.69
5349509--5349541	4	8.2	4	100	0	66	51	24	0	24	1.48
5361576--5361604	6	4.8	6	100	0	58	65	0	17	17	1.27
5367009--5367149	25	5.6	25	71	9	92	37	20	21	20	1.94
5367079--5367147	26	2.7	26	84	2	86	37	21	23	17	1.94
5367098--5367164	26	2.6	26	83	9	75	38	22	19	19	1.93
5369450--5369482	14	2.4	14	94	0	57	36	6	21	36	1.78
5373193--5373307	51	2.3	51	92	3	187	28	27	0	43	1.55
5373326--5373365	21	1.9	21	94	0	71	42	0	0	57	0.98
5373308--5373373	31	2.2	30	91	2	105	39	0	0	60	0.97
5374454--5374478	7	3.6	7	100	0	50	28	0	12	60	1.32
5375566--5375750	71	2.6	71	93	0	325	37	3	14	45	1.61
5375749--5375802	23	2.7	18	75	24	63	51	18	0	29	1.46
5375758--5375801	23	1.9	23	100	0	88	52	15	0	31	1.44
5375771--5376019	29	8.6	29	90	2	392	44	25	1	28	1.64
5375771--5376019	117	2.1	116	91	2	401	44	25	1	28	1.64
5376014--5376121	55	2.0	55	96	0	198	38	12	3	45	1.59
5376105--5376129	10	2.5	10	100	0	50	44	8	0	48	1.32
5379218--5379565	124	2.8	125	92	1	601	33	22	14	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5380061--5380133	35	2.1	35	87	10	105	72	10	1	15	1.18
5380625--5380653	14	2.0	15	93	6	51	6	3	13	75	1.13
5385252--5385305	6	9.3	6	73	15	51	35	0	0	64	0.94
5385261--5385318	25	2.3	26	80	17	68	34	0	0	65	0.93
5386008--5386067	31	1.9	31	89	0	93	71	5	1	21	1.14
5386032--5386083	20	2.7	20	82	11	65	67	5	0	26	1.13
5386032--5386096	20	3.2	22	81	12	61	66	7	0	26	1.19
5389671--5389851	90	2.0	90	91	3	292	32	12	12	43	1.79
5398223--5398277	28	2.0	28	92	0	92	27	21	14	36	1.93
5406588--5406624	16	2.4	16	90	4	58	59	5	2	32	1.34
5406739--5406860	60	2.0	60	88	3	183	54	13	0	31	1.45
5406938--5406974	19	1.9	19	94	0	65	48	16	0	35	1.46
5406943--5406983	19	2.2	19	86	8	57	51	14	0	34	1.43
5406837--5407234	80	4.7	80	76	17	383	57	11	0	31	1.34
5407017--5407059	8	5.0	8	78	15	50	58	16	0	25	1.38
5407017--5407073	27	2.1	27	93	0	96	56	14	0	29	1.39
5407108--5407255	21	7.2	21	69	13	94	58	11	0	30	1.34
5407195--5407258	19	3.3	19	82	8	83	56	9	0	34	1.32
5407047--5407234	82	2.3	80	87	3	286	57	10	0	32	1.32
5407264--5407336	27	2.7	27	91	0	119	16	28	23	31	1.96
5408601--5408646	14	3.2	14	77	17	58	28	0	2	69	1.00
5417276--5417324	24	2.0	24	92	0	80	30	8	24	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5423558--5423645	43	2.0	43	93	0	149	51	14	14	19	1.77
5425405--5425435	15	2.1	15	100	0	62	54	0	19	25	1.44
5425742--5425804	30	2.1	30	90	0	99	23	3	15	57	1.53
5427349--5427388	17	2.4	17	87	4	55	27	0	17	55	1.43
5428613--5428751	46	3.0	46	92	0	233	35	10	25	28	1.90
5440402--5440442	13	3.2	13	80	19	59	53	4	0	41	1.22
5451948--5452001	25	2.2	24	75	15	58	44	5	42	7	1.55
5453511--5453536	3	8.7	3	100	0	52	34	30	34	0	1.58
5455335--5456377	520	2.0	519	99	0	2041	38	20	15	25	1.91
5457793--5457926	27	5.0	28	77	7	107	39	25	17	17	1.91
5457802--5457953	54	2.8	54	83	2	144	38	25	18	17	1.92
5457855--5457954	27	3.7	27	76	10	114	36	23	20	21	1.96
5458303--5458342	20	1.9	22	85	10	57	32	15	0	52	1.43
5463541--5463594	19	2.8	20	72	16	58	57	7	0	35	1.27
5471152--5471209	29	2.0	29	96	0	107	25	3	13	56	1.53
5476443--5476487	23	2.0	23	90	0	72	20	20	13	46	1.83
5489183--5489207	6	4.2	6	100	0	50	16	0	52	32	1.44
5489738--5489789	20	2.7	19	81	3	59	61	17	13	7	1.54
5490444--5490483	20	2.0	20	90	0	62	50	12	10	27	1.72
5490432--5490498	34	1.9	35	90	3	109	46	13	8	31	1.74
5497251--5497312	21	2.8	22	72	16	56	62	3	3	30	1.26
5497283--5497334	25	2.0	26	85	11	70	67	1	1	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5498673--5498710	2	19.5	2	83	5	51	50	0	50	0	1.00
5499075--5499135	6	10.7	6	84	10	83	50	34	13	1	1.51
5499072--5499130	15	3.7	15	80	12	73	52	33	11	1	1.48
5499072--5499135	21	3.2	21	82	13	80	51	34	12	1	1.49
5505292--5505378	39	2.2	41	83	8	108	49	10	1	39	1.44
5510884--5510923	19	2.1	19	86	9	55	30	2	0	67	1.04
5511098--5511145	20	2.3	20	79	10	53	41	2	2	54	1.24
5515838--5515880	19	2.2	20	87	4	61	62	2	0	34	1.08
5516894--5516923	7	4.3	7	100	0	60	13	0	0	86	0.57
5533803--5533992	33	5.7	32	70	13	100	30	25	12	31	1.93
5533901--5534061	35	4.7	34	70	16	109	31	24	11	32	1.90
5533845--5534061	101	2.1	101	86	1	292	30	24	11	32	1.91
5533872--5534009	33	4.1	33	70	14	102	33	23	10	31	1.90
5533961--5534025	33	1.9	34	81	3	78	30	23	10	35	1.89
5536734--5536794	24	2.5	23	80	15	61	45	0	4	49	1.23
5537083--5537114	3	10.7	3	100	0	64	34	0	0	65	0.93
5538511--5538615	45	2.3	45	90	0	165	21	19	19	40	1.92
5541130--5541238	17	6.5	17	73	3	87	22	8	24	44	1.80
5541129--5541270	33	4.2	34	74	5	110	21	9	23	45	1.81
5541131--5541270	50	2.8	50	75	0	145	22	8	24	45	1.80
5545629--5545654	5	5.2	5	100	0	52	42	19	19	19	1.90
5548778--5548876	50	2.0	50	93	0	171	39	8	19	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5557455--5557506	24	2.2	24	100	0	104	28	3	15	51	1.60
5566951--5566980	14	2.1	14	93	0	51	36	0	13	50	1.42
5575627--5575673	24	2.0	24	83	4	60	40	10	8	40	1.70
5589487--5589538	19	2.8	19	76	2	61	61	1	1	34	1.18
5596589--5596641	24	2.2	24	77	9	56	50	0	7	41	1.30
5599999--5600130	27	4.9	27	83	0	174	20	16	20	42	1.89
5600637--5600779	73	2.0	73	90	2	225	37	16	19	26	1.93
5601606--5601663	27	2.2	26	78	6	62	56	10	8	24	1.60
5603808--5604128	43	7.5	44	65	15	145	26	23	20	29	1.99
5603763--5604155	127	3.1	127	95	0	687	25	23	20	30	1.99
5604194--5604438	87	2.8	87	83	3	235	22	21	23	31	1.98
5604231--5604570	43	7.9	43	81	3	369	22	22	22	31	1.98
5605780--5605837	15	4.2	13	80	20	64	13	10	0	75	1.04
5605780--5605837	14	4.1	14	82	8	73	13	10	0	75	1.04
5605780--5605837	29	2.0	28	87	9	82	13	10	0	75	1.04
5606895--5606919	12	2.1	12	100	0	50	60	0	16	24	1.36
5609951--5610107	73	2.2	73	92	2	262	36	17	19	26	1.94
5610933--5610990	27	2.2	26	78	6	62	56	10	8	24	1.60
5624068--5624134	4	16.2	4	73	11	55	1	28	2	67	1.14
5624062--5624126	21	3.1	21	80	14	80	0	29	3	67	1.05
5624064--5624124	25	2.4	26	86	8	81	0	27	3	68	1.05
5624068--5624132	25	2.6	25	83	7	78	1	29	3	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5624157--5624228	5	14.4	5	100	0	144	59	0	0	40	0.97
5625400--5625449	21	2.3	22	82	6	57	46	12	14	28	1.79
5627785--5627815	15	2.0	16	93	6	55	35	0	0	64	0.94
5629013--5629060	22	2.2	22	92	0	78	14	14	14	56	1.68
5631365--5631432	31	2.2	31	81	5	84	29	22	5	42	1.77
5631307--5631499	90	2.1	90	79	5	212	25	16	12	46	1.81
5631932--5632001	32	2.2	32	84	0	86	47	14	12	25	1.80
5633563--5633598	11	3.0	13	80	19	51	63	0	0	36	0.94
5634873--5634934	30	2.1	29	90	3	97	56	11	3	29	1.50
5644194--5644337	73	2.0	73	90	0	225	30	22	16	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207