genome.fa.s19.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  137  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42052583--42052621	19	2.1	19	85	9	53	23	0	12	64	1.28
42057121--42057162	11	3.8	11	87	0	57	9	9	9	71	1.32
42059392--42059604	111	1.9	114	83	10	278	23	4	15	57	1.57
42062391--42062492	21	4.7	21	74	6	78	35	23	20	20	1.96
42062391--42062498	42	2.5	41	76	8	99	35	24	21	19	1.96
42063865--42063922	30	2.0	28	86	6	80	51	0	1	46	1.11
42063873--42063913	20	2.0	22	85	9	59	51	0	2	46	1.14
42071263--42071338	32	2.4	32	86	0	98	23	36	23	15	1.94
42073565--42073599	14	2.5	14	95	0	61	34	20	5	40	1.76
42074269--42074356	6	14.7	6	96	0	158	18	34	32	14	1.91
42074835--42075016	48	3.8	48	98	0	346	48	12	7	31	1.68
42078453--42078493	20	2.0	21	85	4	57	39	0	4	56	1.21
42078484--42078571	25	3.4	26	80	13	85	27	6	6	59	1.49
42078510--42078571	27	2.3	26	84	13	74	27	4	6	61	1.41
42085676--42085814	44	3.2	44	64	11	104	28	23	23	25	2.00
42085667--42085991	88	3.7	87	86	3	445	27	22	24	25	2.00
42086006--42086273	131	2.1	128	88	3	394	30	20	25	23	1.99
42086006--42086306	131	2.3	130	83	8	355	30	20	24	23	1.99
42086631--42086724	44	2.1	44	94	0	161	29	24	19	26	1.98
42086631--42086735	44	2.4	44	90	3	149	29	22	21	25	1.99
42088147--42088187	20	2.0	21	85	4	57	39	0	4	56	1.21
42088178--42088265	25	3.4	26	80	13	85	27	6	6	59	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42088204--42088265	27	2.3	26	84	13	74	27	4	6	61	1.41
42092675--42092762	31	2.8	31	79	3	97	38	18	19	23	1.93
42093540--42093565	5	5.2	5	100	0	52	42	19	19	19	1.90
42094313--42094372	30	2.0	31	86	3	86	40	0	40	20	1.52
42097225--42097528	47	6.4	47	88	3	398	27	30	8	32	1.87
42110629--42110923	144	2.0	144	90	2	466	42	12	5	40	1.65
42113497--42113553	22	2.6	22	76	15	55	52	5	3	38	1.41
42115001--42115034	12	2.9	12	86	4	52	32	0	0	67	0.91
42115158--42115216	30	2.0	29	90	3	91	55	13	3	27	1.54
42118188--42118218	13	2.4	13	100	0	62	16	12	9	61	1.56
42119557--42120027	42	11.3	42	87	0	640	38	23	17	20	1.93
42119552--42120027	167	2.8	168	86	3	672	38	23	17	21	1.93
42119557--42120027	125	3.8	126	86	1	633	38	23	17	20	1.93
42127331--42127371	18	2.3	18	95	0	73	29	21	17	31	1.96
42128754--42128818	27	2.4	26	82	12	78	40	9	10	40	1.72
42128764--42128818	27	2.0	27	92	0	92	41	10	9	38	1.72
42129727--42130038	147	2.1	149	88	4	470	42	9	5	41	1.62
42130239--42130264	3	8.7	3	100	0	52	0	0	30	69	0.89
42138428--42138563	37	3.5	40	74	12	129	33	23	17	25	1.96
42139416--42139623	108	1.9	109	99	1	409	14	16	3	64	1.42
42153034--42153082	18	2.6	19	80	6	55	30	2	0	67	1.02
42167866--42167923	23	2.5	23	83	11	73	51	3	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42177324--42177373	26	1.9	26	91	0	82	32	12	10	46	1.74
42179190--42179263	23	3.2	23	92	0	130	45	21	14	17	1.84
42179156--42179268	46	2.5	44	85	9	131	43	23	15	17	1.87
42179590--42179639	25	2.0	25	84	11	66	36	22	0	42	1.54
42181927--42181970	20	2.2	20	95	0	79	34	11	11	43	1.77
42185076--42185114	20	1.9	20	84	5	51	23	2	5	69	1.21
42199879--42199915	19	1.9	19	88	0	56	29	2	8	59	1.40
42202177--42202263	6	15.7	6	71	15	62	37	14	29	17	1.90
42202177--42202274	12	7.8	12	68	15	54	36	13	29	20	1.91
42202174--42202252	15	5.3	15	81	3	79	37	15	30	16	1.89
42206717--42206772	27	2.1	27	96	0	103	42	23	17	16	1.88
42213223--42213257	17	1.9	19	88	11	56	45	2	17	34	1.63
42220937--42220974	2	19.0	2	88	0	58	52	44	0	2	1.14
42222244--42222472	109	2.1	109	96	1	422	22	13	15	47	1.81
42222610--42222636	2	13.5	2	100	0	54	0	48	0	51	1.00
42226844--42226904	21	2.6	25	73	26	69	24	0	3	72	1.00
42227000--42227028	2	14.5	2	100	0	58	51	0	0	48	1.00
42228147--42228213	10	7.4	9	71	17	50	67	1	1	29	1.09
42233481--42233513	15	2.1	16	88	5	50	63	0	12	24	1.28
42243212--42243404	107	1.8	107	80	0	233	26	16	25	31	1.96
42245579--42245630	25	2.1	25	85	7	70	19	23	19	38	1.93
42247637--42247727	40	2.3	40	86	0	119	24	23	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42247664--42247774	40	2.8	39	82	5	116	25	21	28	24	1.99
42254997--42255107	40	2.8	39	82	5	116	25	21	28	24	1.99
42257370--42257424	25	2.2	25	93	0	92	21	27	14	36	1.93
42259983--42260019	17	2.2	17	100	0	74	51	0	10	37	1.37
42262615--42262666	24	2.2	24	89	0	77	55	9	1	32	1.43
42264688--42265002	111	2.8	111	91	2	501	35	18	14	30	1.92
42265109--42265173	22	3.0	22	78	13	71	69	7	4	18	1.31
42265484--42265554	3	23.7	3	76	11	56	67	2	4	25	1.22
42265466--42265558	21	4.4	21	71	15	68	66	2	6	24	1.26
42267019--42267999	44	22.3	44	63	12	140	24	24	23	26	2.00
42267029--42267190	88	1.8	88	88	5	247	25	24	24	24	2.00
42267157--42267245	45	2.0	45	84	0	115	24	23	22	29	1.99
42267025--42267212	88	2.1	88	82	4	245	24	26	22	26	2.00
42267211--42268037	88	9.4	88	94	0	1370	24	24	23	26	2.00
42267069--42267587	133	3.9	133	71	13	431	24	24	23	26	2.00
42269109--42269155	21	2.2	21	85	7	60	23	38	12	25	1.90
42269247--42269279	9	3.9	9	84	15	52	12	12	0	75	1.04
42269247--42269279	16	2.1	16	100	0	66	12	12	0	75	1.04
42270089--42270133	6	7.3	6	80	14	56	0	20	0	80	0.72
42270860--42270896	17	2.1	18	90	5	58	45	0	24	29	1.53
42280413--42280478	28	2.4	28	92	0	105	39	22	1	36	1.64
42283524--42283597	20	4.0	20	70	25	72	48	10	9	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42283512--42283606	34	2.8	34	91	4	147	45	12	7	34	1.70
42284430--42284509	24	3.4	23	74	5	79	27	20	25	27	1.99
42284989--42285491	254	2.0	254	91	0	817	41	14	19	24	1.89
42285801--42285845	23	2.0	23	90	0	72	42	20	6	31	1.77
42285802--42285851	23	2.2	23	85	0	64	44	20	8	28	1.79
42291279--42291317	18	2.2	18	90	9	62	38	2	0	58	1.12
42302629--42302752	40	3.2	40	81	2	99	22	27	25	24	2.00
42302665--42302850	41	4.6	41	87	3	234	24	26	24	24	2.00
42310563--42310705	40	3.6	40	87	4	200	23	26	24	25	2.00
42312159--42312347	96	1.9	98	96	2	355	29	21	14	34	1.93
42315405--42315445	19	2.1	20	86	4	57	34	29	4	31	1.79
42315430--42315771	47	7.4	47	89	9	519	30	28	7	32	1.85
42315430--42315771	102	3.7	94	88	10	519	30	28	7	32	1.85
42315425--42315771	149	2.5	139	86	13	525	31	29	7	32	1.85
42318137--42318281	23	6.3	23	85	4	204	31	26	19	22	1.98
42318861--42318889	14	2.1	14	100	0	58	27	41	0	31	1.56
42328634--42328715	42	2.0	42	97	0	155	45	13	10	30	1.78
42329814--42329864	24	2.1	24	100	0	102	33	27	23	15	1.95
42331882--42331927	19	2.5	19	96	3	85	43	13	4	39	1.63
42333355--42333475	63	1.9	63	83	6	156	24	14	24	36	1.93
42338856--42339118	120	2.2	120	96	0	481	45	1	5	47	1.37
42339067--42339108	17	2.6	16	82	17	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42339337--42339372	16	2.2	16	100	0	72	38	36	0	25	1.56
42342105--42342137	10	3.4	10	87	4	50	63	9	6	21	1.45
42359691--42359849	51	3.3	50	72	13	152	33	16	18	31	1.94
42359652--42359901	95	2.6	96	85	5	330	32	15	20	31	1.94
42368716--42368803	26	3.3	26	71	7	70	19	30	19	30	1.96
42373295--42373337	21	2.0	21	90	0	68	32	0	6	60	1.23
42373290--42373347	21	2.5	22	81	13	64	36	1	8	53	1.42
42373345--42373479	58	2.3	57	84	5	173	42	1	2	52	1.25
42373655--42373716	16	3.9	16	86	0	88	29	22	4	43	1.74
42373653--42373716	32	2.0	32	90	0	101	28	21	4	45	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207