genome.fa.s19.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  21  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6263108--6263162	28	2.0	27	89	6	85	49	7	0	43	1.30
6265176--6265238	4	15.8	4	100	0	126	25	0	25	49	1.51
6270267--6270359	43	2.2	43	92	5	154	30	15	12	41	1.84
6274850--6274902	26	2.0	26	96	0	97	30	7	28	33	1.85
6281255--6281299	22	1.9	25	86	13	69	22	4	11	62	1.46
6281869--6281917	21	2.3	21	78	3	53	38	16	4	40	1.67
6283135--6283197	19	3.2	20	75	16	60	33	4	3	58	1.35
6291323--6291370	19	2.5	19	80	10	53	56	4	0	39	1.19
6293348--6293392	24	1.9	23	95	4	81	26	0	4	68	1.08
6300771--6300836	25	2.7	24	74	4	69	13	25	19	40	1.89
6300771--6300848	24	3.2	25	73	10	72	14	28	21	35	1.92
6301022--6301103	24	3.4	24	86	10	105	17	31	20	30	1.95
6301012--6301103	24	3.8	24	82	7	98	17	30	20	31	1.96
6302513--6302583	27	2.6	27	79	0	79	33	29	16	19	1.94
6302497--6302600	27	3.9	27	71	9	77	32	25	18	24	1.97
6317151--6317184	14	2.4	14	100	0	68	14	41	32	11	1.82
6317413--6317455	10	4.1	10	80	11	50	25	30	0	44	1.55
6317415--6317458	11	4.2	10	88	8	61	25	29	0	45	1.54
6319292--6319328	18	2.1	18	89	0	56	21	27	8	43	1.80
6319531--6319571	21	2.0	21	85	0	55	29	41	24	4	1.75
6322278--6322693	126	3.3	125	91	0	661	26	21	18	32	1.97
6322726--6323002	96	2.9	96	83	3	335	41	18	3	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6325355--6325568	106	2.0	106	93	0	365	38	20	6	34	1.78
6328325--6328382	30	1.9	30	96	0	107	25	34	24	15	1.95
6328325--6328398	30	2.5	30	88	4	96	24	35	21	18	1.96
6329598--6329702	25	4.3	25	75	3	97	34	20	25	20	1.96
6329790--6329843	26	2.1	25	86	3	72	33	22	24	20	1.97
6338373--6338492	64	1.9	64	83	0	159	36	23	19	20	1.95
6340023--6340084	27	2.3	27	91	0	97	67	1	0	30	1.00
6340146--6340257	56	2.0	56	100	0	224	41	5	16	37	1.71
6340264--6340324	17	3.4	17	70	12	59	31	3	14	50	1.59
6340259--6340333	37	2.0	37	100	0	150	33	5	16	45	1.69
6340340--6340380	9	4.6	9	88	11	66	26	9	19	43	1.82
6341463--6341505	22	2.0	22	85	0	59	44	0	4	51	1.22
6344794--6344913	3	40.0	3	88	0	96	45	34	20	0	1.52
6345672--6345718	14	3.4	14	83	16	71	17	17	8	57	1.63
6346671--6346712	6	7.2	6	86	2	50	47	30	21	0	1.51
6346675--6346703	9	3.2	9	100	0	58	44	34	20	0	1.52
6346671--6346712	15	2.9	15	82	3	59	47	30	21	0	1.51
6368154--6368267	3	38.0	3	75	20	73	71	1	27	0	0.96
6368154--6368288	11	12.7	11	73	18	83	73	1	25	0	0.92
6368154--6368267	46	2.5	46	97	1	210	71	1	27	0	0.96
6368167--6368290	7	16.7	7	75	15	58	74	1	24	0	0.91
6380178--6380232	21	2.7	21	85	2	67	83	5	9	1	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6381200--6382246	77	13.9	75	86	7	1251	27	15	20	36	1.93
6381200--6382245	303	3.5	302	86	7	1310	27	15	20	36	1.93
6382420--6382565	30	5.0	28	79	8	148	32	17	7	42	1.78
6382420--6382564	59	2.5	58	79	5	157	32	17	6	42	1.76
6382474--6382521	13	3.5	13	73	15	51	31	12	8	47	1.71
6382420--6382554	29	4.6	28	81	8	137	31	18	6	42	1.76
6382895--6383001	13	7.9	13	75	16	76	77	0	21	0	0.82
6382891--6382995	36	3.1	32	82	13	129	76	0	22	0	0.85
6382904--6383001	20	4.8	20	71	15	76	78	0	20	1	0.81
6382893--6383007	6	18.2	6	71	19	65	77	0	20	1	0.86
6383274--6383321	22	2.2	22	88	3	71	83	0	16	0	0.65
6383273--6383321	21	2.2	23	82	10	66	83	0	16	0	0.64
6383273--6383321	11	4.5	11	79	5	55	83	0	16	0	0.64
6383274--6383313	10	3.9	10	80	6	53	85	0	15	0	0.61
6383810--6383853	22	2.0	22	86	8	63	40	13	6	38	1.71
6383841--6383903	32	2.0	32	87	9	94	26	9	9	53	1.64
6388642--6388675	11	2.8	13	91	8	54	44	11	8	35	1.72
6389740--6390050	33	8.7	33	71	21	186	21	19	27	31	1.97
6389765--6390049	75	3.8	75	93	0	480	21	18	27	32	1.97
6389800--6389936	42	3.5	42	75	17	175	22	16	27	32	1.96
6392556--6393264	363	2.0	363	91	0	1168	36	21	13	28	1.91
6393728--6393802	24	3.1	24	83	7	107	32	21	25	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6393848--6393896	26	1.9	25	91	4	80	42	22	22	12	1.86
6396427--6396451	11	2.3	11	100	0	50	32	16	12	40	1.84
6398501--6398577	32	2.6	30	80	13	88	55	1	3	38	1.26
6398520--6398600	30	2.6	30	84	9	92	50	3	4	40	1.42
6398556--6398631	31	2.5	31	81	10	77	51	5	3	39	1.43
6400799--6400877	31	2.5	31	87	4	106	26	10	16	46	1.78
6406463--6406497	6	5.8	6	93	0	61	80	0	2	17	0.84
6411772--6411965	105	1.8	105	84	0	262	19	26	22	31	1.98
6411939--6412121	25	7.4	25	71	14	112	18	25	20	34	1.96
6411995--6412154	25	6.5	24	73	15	87	19	25	21	33	1.97
6412027--6412147	25	4.9	25	78	8	97	19	25	22	32	1.98
6417261--6417286	6	4.3	6	100	0	52	0	69	0	30	0.89
6421420--6421774	103	3.5	102	89	3	525	31	28	21	18	1.97
6422120--6422177	30	1.9	30	82	0	71	31	25	6	36	1.83
6431955--6431989	16	2.1	17	89	5	54	31	17	0	51	1.45
6432280--6432438	79	2.0	79	97	0	300	37	8	5	49	1.54
6436713--6436754	15	2.7	16	81	7	50	52	2	0	45	1.13
6439663--6439819	80	2.0	79	96	1	287	38	17	18	26	1.92
6439881--6439946	25	2.6	26	79	9	75	66	4	4	24	1.29
6440082--6440158	36	2.2	34	78	19	79	27	2	3	66	1.22
6442896--6442921	3	8.7	3	100	0	52	69	0	0	30	0.89
6443932--6444024	47	2.0	47	91	2	152	33	19	13	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6444484--6444515	2	16.0	2	100	0	64	0	50	0	50	1.00
6454428--6454464	15	2.3	17	86	9	51	27	2	5	64	1.28
6460767--6460859	43	2.2	44	92	3	154	51	13	6	27	1.66
6463607--6463642	2	18.0	2	100	0	72	0	50	0	50	1.00
6486960--6487055	19	5.2	19	74	5	106	48	2	12	36	1.53
6486961--6487055	37	2.6	37	96	0	172	49	2	12	35	1.53
6487131--6487189	19	3.2	19	82	4	84	49	0	10	40	1.37
6487442--6487479	20	1.9	20	89	10	60	34	5	7	52	1.53
6487813--6487876	28	2.4	28	94	5	114	48	0	10	40	1.38
6489384--6489448	30	2.2	31	88	5	98	36	1	4	56	1.29
6490460--6490485	3	8.7	3	100	0	52	34	0	0	65	0.93
6490659--6490701	20	2.2	19	87	4	59	23	6	4	65	1.37
6496214--6496274	30	2.0	30	96	0	113	47	14	19	18	1.82
6500051--6500132	25	3.3	24	83	6	101	18	28	20	32	1.96
6500953--6500986	13	2.6	13	95	0	59	41	38	0	20	1.53
6500967--6501083	39	3.0	39	94	1	200	50	26	2	20	1.61
6501216--6501290	37	2.0	37	89	0	114	37	5	13	44	1.66
6501289--6501355	9	7.4	9	87	0	71	26	7	23	41	1.81
6501289--6501373	18	4.7	18	83	11	93	25	7	24	42	1.80
6501295--6501374	27	3.0	27	80	9	74	25	6	25	43	1.77
6501306--6501373	9	7.6	9	81	6	59	26	5	22	45	1.75
6503499--6503869	104	3.6	104	91	2	584	31	30	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6504198--6504262	30	2.2	29	81	8	76	30	27	6	35	1.81
6504205--6504262	30	1.9	30	85	0	80	31	24	6	37	1.82
6506476--6506555	24	3.2	24	77	7	72	40	17	22	20	1.92
6508688--6508739	20	2.5	20	84	6	59	71	0	3	25	1.03
6518103--6518194	22	4.2	22	83	8	98	30	27	0	42	1.56
6518144--6518246	52	2.0	51	81	12	122	33	33	0	33	1.58
6518196--6518237	22	1.9	22	90	0	66	33	33	0	33	1.58
6518281--6518342	29	2.1	29	88	5	90	38	0	1	59	1.07
6523729--6524276	47	11.6	47	93	2	891	33	8	29	29	1.86
6523729--6524276	143	3.9	141	93	1	927	33	8	29	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207