genome.fa.s19.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  152  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46625720--46625759	19	2.1	19	90	9	64	30	10	10	50	1.69
46638834--46638969	58	2.3	58	83	9	170	42	2	5	50	1.37
46642805--46642864	31	1.9	31	93	0	102	36	21	21	20	1.95
46642841--46642879	19	2.1	19	95	0	69	35	23	20	20	1.96
46643011--46643058	19	2.5	19	80	13	53	33	10	16	39	1.83
46645895--46645928	13	2.8	12	82	8	50	23	0	2	73	0.97
46647287--46647355	16	4.2	16	92	3	120	26	0	36	37	1.57
46647287--46647355	33	2.1	32	94	2	120	26	0	36	37	1.57
46647571--46647625	15	3.4	16	80	16	53	50	1	0	47	1.11
46647591--46647625	18	2.0	17	88	5	52	54	0	0	45	0.99
46647539--46648106	120	4.8	114	85	9	445	51	3	1	43	1.30
46647777--46647819	22	1.9	23	85	4	61	60	2	0	37	1.10
46647831--46647865	18	2.0	18	94	5	63	57	0	2	40	1.14
46647923--46647987	18	4.2	16	72	18	57	60	0	1	38	1.07
46647950--46647987	18	2.2	17	90	4	58	63	0	2	34	1.09
46652334--46652384	23	2.2	23	89	0	75	49	7	7	35	1.61
46652344--46652391	23	2.1	23	88	0	69	47	10	6	35	1.63
46658647--46658673	8	3.4	8	100	0	54	0	11	0	88	0.50
46661612--46661763	28	5.2	28	64	14	92	28	22	15	33	1.94
46661625--46661725	31	3.4	31	67	8	91	30	24	15	28	1.96
46661597--46662159	59	9.7	59	81	7	614	28	24	13	34	1.93
46661597--46662077	178	2.7	175	85	4	644	28	24	12	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46662027--46662128	51	2.0	51	82	3	125	32	22	10	34	1.89
46662121--46662198	29	2.7	29	85	0	93	21	24	14	39	1.90
46675796--46675822	12	2.2	12	100	0	54	14	37	22	25	1.93
46681707--46681840	45	3.0	45	76	12	150	23	28	21	26	1.99
46681821--46682300	131	3.7	131	92	1	766	25	24	19	30	1.98
46681964--46682287	44	7.4	43	66	16	148	25	23	19	31	1.98
46683520--46683576	7	8.0	7	81	18	73	14	14	0	71	1.14
46683520--46683584	22	3.1	21	85	10	80	12	13	0	73	1.09
46684497--46684537	6	6.7	6	88	5	64	14	0	12	73	1.11
46684495--46684538	13	3.5	13	87	6	72	15	0	11	72	1.11
46684497--46684537	19	2.2	18	91	4	64	14	0	12	73	1.11
46684496--46684550	25	2.2	25	80	6	67	10	5	9	74	1.21
46686713--46686763	22	2.3	22	93	3	84	60	31	5	1	1.31
46686721--46686766	22	2.1	22	100	0	92	58	30	6	4	1.43
46692176--46692254	30	2.6	30	77	0	86	29	18	11	40	1.86
46692235--46692394	30	5.3	30	76	8	130	22	28	13	36	1.91
46705357--46705845	129	3.8	129	91	0	791	31	20	23	24	1.98
46705835--46706073	44	5.6	45	71	11	144	26	18	24	30	1.98
46705830--46706069	129	1.9	129	91	0	372	26	18	23	30	1.98
46705830--46706124	129	2.3	129	84	3	317	27	19	23	29	1.98
46707420--46707453	5	6.8	5	90	9	52	14	0	0	85	0.60
46707420--46707456	16	2.4	15	91	8	65	13	0	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46707423--46707453	11	2.9	11	95	4	55	16	0	0	83	0.64
46713444--46713498	27	2.0	27	82	6	67	41	1	1	54	1.21
46713589--46714215	106	5.9	106	83	0	729	33	15	16	34	1.90
46732420--46732475	25	2.2	25	75	6	60	28	14	25	32	1.94
46732491--46732629	72	1.9	71	85	1	188	23	19	25	32	1.97
46735146--46735181	18	1.9	19	88	5	56	33	2	8	55	1.44
46736438--46736555	39	3.0	39	83	4	166	29	5	20	44	1.75
46736438--46736578	39	3.6	37	78	16	133	30	7	19	43	1.77
46737891--46737944	24	2.3	23	81	6	65	14	3	11	70	1.29
46748917--46749002	41	2.1	42	91	2	138	26	20	29	23	1.99
46756105--46756254	41	3.6	41	97	0	273	27	20	28	23	1.99
46762370--46762406	12	3.2	12	85	7	51	29	0	0	70	0.88
46762341--46762410	37	1.9	35	82	5	86	25	2	1	70	1.10
46763284--46763442	9	16.9	9	68	13	88	57	3	1	36	1.27
46765106--46765153	18	2.6	19	78	12	55	58	0	4	37	1.18
46765988--46766053	31	2.1	32	86	10	93	18	1	18	62	1.41
46770796--46770914	25	4.8	25	71	8	93	36	19	24	20	1.95
46782139--46782208	26	2.7	26	78	12	72	60	4	2	32	1.31
46783208--46783246	18	2.2	18	86	9	53	20	17	43	17	1.88
46786191--46786312	37	3.3	37	76	15	144	38	31	13	16	1.88
46790395--46790435	9	4.6	9	90	0	64	41	24	9	24	1.85
46790395--46790435	18	2.3	18	100	0	82	41	24	9	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46790442--46790491	26	2.0	26	84	4	66	26	2	6	66	1.26
46790524--46790571	5	9.0	5	86	13	69	4	0	56	39	1.19
46790525--46790592	18	3.9	17	83	11	77	7	1	50	41	1.39
46791230--46791362	43	3.1	43	84	3	151	29	16	23	30	1.96
46791249--46791363	43	2.7	44	86	2	153	29	17	23	29	1.97
46794148--46794195	24	2.0	24	91	0	78	39	2	33	25	1.67
46794255--46794372	41	2.8	41	78	6	112	23	20	21	34	1.96
46797055--46797584	44	12.5	44	85	8	708	29	26	17	25	1.98
46797055--46797584	122	4.2	122	90	3	704	29	26	17	25	1.98
46797991--46798086	31	3.1	31	93	3	165	46	13	9	30	1.74
46798424--46798569	44	3.3	44	93	0	238	30	25	19	25	1.98
46801415--46801480	5	14.2	5	70	20	54	40	16	21	21	1.91
46801430--46801480	9	5.8	9	88	2	77	41	15	21	21	1.90
46801430--46801480	18	2.9	18	97	2	95	41	15	21	21	1.90
46802664--46802707	23	2.0	22	95	4	79	59	2	6	31	1.36
46802718--46802748	10	3.0	10	90	9	53	80	0	0	19	0.71
46803417--46803474	22	2.6	22	81	7	64	41	17	5	36	1.72
46803782--46803846	15	4.4	16	73	21	52	49	1	6	43	1.37
46808880--46808915	15	2.5	15	90	4	56	27	0	5	66	1.13
46814852--46814892	18	2.3	18	100	0	82	31	4	24	39	1.76
46815744--46815783	20	2.0	20	85	5	53	32	2	0	65	1.06
46850555--46850592	20	1.9	20	89	10	60	39	13	15	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46853409--46853502	47	1.9	49	85	6	129	53	5	3	38	1.40
46857783--46857857	6	12.5	6	68	20	50	50	1	2	45	1.24
46859458--46859491	17	2.0	17	94	0	59	70	8	11	8	1.34
46859767--46859842	38	2.0	38	92	0	125	34	25	13	27	1.93
46862920--46862944	11	2.3	11	100	0	50	24	8	0	68	1.16
46864998--46865050	23	2.3	23	83	9	63	66	0	1	32	1.03
46868577--46868608	17	1.9	16	93	6	55	6	0	6	87	0.67
46871785--46871818	18	1.9	17	88	5	50	61	0	0	38	0.96
46872098--46872135	18	2.0	20	85	15	53	65	5	5	23	1.34
46886066--46886152	24	3.7	23	76	10	79	57	8	4	29	1.48
46886090--46886155	23	2.9	23	80	10	82	59	6	3	31	1.37
46890747--46890772	13	2.0	13	100	0	52	46	0	23	30	1.53
46916174--46916210	17	2.1	18	90	5	58	54	24	0	21	1.45
46917890--46918071	51	3.6	51	80	2	188	25	17	25	31	1.97
46918078--46918172	45	2.1	45	84	3	129	30	18	20	30	1.96
46928604--46928667	29	2.2	29	80	0	74	39	10	4	45	1.60
46932639--46932696	23	2.5	23	82	0	71	20	15	13	50	1.78
46933976--46934041	32	2.1	32	97	0	123	27	13	15	43	1.84
46936726--46936754	12	2.3	13	94	5	51	75	0	24	0	0.80
46938039--46938183	42	3.5	42	86	3	211	15	31	24	28	1.96
46939721--46939834	60	1.9	60	94	0	201	40	18	20	21	1.92
46946158--46946237	18	4.1	20	78	13	87	33	2	35	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46946159--46946237	39	2.1	39	84	11	103	34	2	35	27	1.71
46946158--46946237	21	4.1	21	78	16	75	33	2	35	28	1.71
46946673--46946706	17	2.0	17	94	0	59	20	17	8	52	1.71
46949526--46949591	20	3.3	19	70	16	53	30	16	36	16	1.91
46949525--46949687	40	4.1	40	78	6	177	34	17	30	18	1.94
46954972--46955057	42	2.0	42	100	0	172	34	16	16	32	1.91
46957178--46957229	26	2.0	26	92	0	86	28	34	21	15	1.94
46957190--46957340	72	2.1	71	91	2	241	30	29	16	23	1.96
46957259--46957482	104	2.2	104	93	1	378	31	31	19	17	1.95
46957811--46957874	30	2.2	29	81	10	76	29	28	6	35	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207