genome.fa.s19.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  206  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62079704--62079778	19	4.1	18	77	11	73	50	0	2	46	1.15
62089423--62089558	58	2.3	60	83	2	168	25	15	13	46	1.82
62089435--62089557	60	2.1	58	84	3	156	25	16	13	45	1.83
62091571--62091637	31	2.2	31	88	0	98	35	2	8	52	1.48
62092938--62095892	984	3.0	984	99	0	5903	23	18	21	36	1.95
62096637--62096745	38	2.8	38	84	1	137	25	13	10	50	1.73
62113125--62113151	3	9.0	3	100	0	54	66	0	0	33	0.92
62113259--62113283	5	5.0	5	100	0	50	20	0	0	80	0.72
62113247--62113289	15	2.9	14	83	13	50	16	4	0	79	0.90
62114117--62114150	17	1.9	18	88	5	52	52	0	5	41	1.25
62118748--62118828	40	2.0	41	83	7	103	43	14	2	39	1.59
62119127--62119181	23	2.3	23	81	9	58	52	5	1	40	1.35
62122056--62122147	9	9.7	9	69	19	53	61	1	4	32	1.22
62122057--62122147	20	4.7	20	72	10	64	61	1	4	32	1.23
62122058--62122130	28	2.5	29	78	10	87	61	0	4	34	1.15
62122060--62122093	17	2.0	17	88	0	50	58	0	0	41	0.98
62122607--62123165	186	3.0	186	90	1	881	44	13	15	26	1.83
62123906--62125401	333	4.5	335	81	4	1662	26	15	25	33	1.95
62123906--62125401	672	2.2	669	81	4	1771	26	15	25	33	1.95
62126808--62126907	33	3.0	33	74	0	92	26	20	23	31	1.98
62135224--62135260	19	1.9	19	88	0	56	75	5	2	16	1.10
62140116--62140238	47	2.6	47	83	5	167	42	18	19	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62153566--62153608	21	2.0	21	86	8	61	46	9	2	41	1.48
62159969--62160012	23	1.9	23	90	0	70	27	13	9	50	1.72
62171498--62171562	31	2.1	31	82	0	76	46	7	7	38	1.61
62174930--62174996	19	3.4	19	84	14	73	35	2	16	44	1.63
62178619--62178671	24	2.3	24	80	6	65	26	9	7	56	1.57
62180645--62180683	20	2.0	20	85	5	53	35	5	0	58	1.20
62181054--62181260	105	2.0	105	89	0	315	30	21	10	36	1.88
62186116--62186164	27	1.9	26	84	12	66	22	10	8	59	1.56
62192204--62192238	7	5.0	7	96	0	61	82	2	0	14	0.77
62195202--62195277	36	2.1	36	97	0	143	46	6	13	34	1.69
62195330--62195368	16	2.4	16	87	8	53	28	2	2	66	1.18
62202836--62202893	30	2.1	26	81	15	64	50	6	1	41	1.39
62206124--62206181	28	2.1	28	87	6	82	24	5	5	65	1.34
62208194--62208232	19	2.1	19	95	0	69	61	0	0	38	0.96
62209188--62209217	14	2.1	14	100	0	60	30	6	43	20	1.77
62215758--62215792	15	2.3	15	85	0	52	31	20	0	48	1.50
62215766--62215825	20	3.3	19	78	17	58	40	18	0	41	1.50
62228133--62228158	12	2.2	12	100	0	52	15	15	19	50	1.79
62228549--62228619	31	2.3	31	85	0	97	45	7	11	36	1.67
62230394--62230433	15	2.6	15	88	4	53	55	0	0	45	0.99
62235960--62236009	15	3.3	15	88	0	73	20	38	0	42	1.52
62238984--62239048	31	2.1	31	97	0	121	52	10	15	21	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62239049--62239197	73	2.0	73	100	0	298	29	18	12	40	1.86
62242356--62242686	145	2.3	143	87	2	461	31	17	10	40	1.84
62243044--62243097	24	2.2	24	93	0	90	46	5	25	22	1.73
62261854--62261936	42	2.0	42	97	0	157	36	16	8	38	1.79
62268898--62268930	17	1.9	17	88	11	50	81	3	12	3	0.91
62274549--62274589	15	2.7	15	92	0	64	43	0	39	17	1.49
62276910--62276961	22	2.4	22	100	0	104	17	19	25	38	1.93
62277905--62277939	18	1.9	18	88	0	52	37	5	25	31	1.80
62286321--62286359	12	3.2	12	92	0	60	41	25	0	33	1.56
62286321--62286359	18	2.2	18	90	0	60	41	25	0	33	1.56
62294456--62294497	22	2.0	21	90	4	66	52	4	0	42	1.22
62294624--62294684	30	2.1	29	84	3	77	39	4	4	50	1.45
62303147--62303206	31	1.9	31	86	6	86	31	16	8	43	1.78
62310913--62310944	6	5.3	6	92	0	55	53	15	0	31	1.43
62319950--62320048	43	2.3	43	92	0	171	46	10	31	12	1.74
62323161--62323185	11	2.3	11	100	0	50	68	16	0	16	1.22
62331825--62331854	15	2.0	15	93	0	51	43	0	0	56	0.99
62333137--62333210	30	2.4	30	77	6	78	25	17	21	35	1.95
62334908--62334939	16	2.0	16	93	0	55	65	0	3	31	1.08
62340900--62340945	23	2.0	23	100	0	92	8	8	21	60	1.53
62345790--62345815	11	2.4	11	100	0	52	38	7	0	53	1.30
62354475--62354508	9	3.7	9	88	7	50	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62354467--62354509	19	2.4	17	88	7	59	30	0	0	69	0.88
62355940--62355995	29	1.9	29	85	7	78	32	10	7	50	1.64
62361511--62361544	14	2.3	15	95	5	61	2	0	14	82	0.79
62371964--62372024	19	3.3	19	76	4	70	42	9	0	47	1.36
62371972--62372024	18	2.9	18	75	11	54	41	9	0	49	1.35
62372512--62372596	27	3.2	27	89	1	127	17	27	30	24	1.97
62372633--62372701	27	2.6	27	83	0	93	49	0	11	39	1.39
62374311--62374346	6	6.0	6	93	0	63	19	0	0	80	0.71
62375780--62375892	60	1.9	60	88	0	172	30	15	15	38	1.89
62378091--62378161	30	2.3	30	80	7	72	40	0	1	57	1.07
62379744--62379860	60	2.0	60	91	0	189	29	15	16	38	1.89
62381250--62381285	12	3.0	12	87	0	54	58	0	0	41	0.98
62381248--62381292	18	2.6	18	82	6	58	55	0	0	44	0.99
62384008--62384042	14	2.5	14	86	13	54	77	0	8	14	0.99
62385722--62385755	16	2.1	17	88	5	52	29	17	11	41	1.85
62386944--62386997	17	3.1	17	80	15	56	37	0	1	61	1.07
62386952--62386995	19	2.3	19	92	7	72	34	0	2	63	1.07
62386962--62387027	30	2.1	31	89	10	100	36	0	1	62	1.05
62386981--62387027	11	4.3	11	75	8	51	36	0	2	61	1.08
62386990--62387043	21	2.5	21	87	6	72	35	0	3	61	1.14
62395593--62396206	313	2.0	312	89	4	943	48	14	8	27	1.74
62398028--62398129	40	2.5	40	92	3	170	41	0	0	57	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62398028--62398115	11	8.6	11	77	22	86	40	1	0	57	1.06
62398098--62398137	21	1.9	21	89	0	62	37	2	0	60	1.11
62420205--62420683	94	5.1	93	77	13	392	42	17	11	28	1.84
62420474--62420683	101	2.1	102	81	5	246	44	16	10	29	1.79
62422492--62422531	9	4.4	9	87	0	62	25	12	22	40	1.89
62424023--62424061	2	19.5	2	94	0	69	0	48	0	51	1.00
62424850--62425026	97	1.8	98	87	3	268	24	7	22	45	1.79
62424850--62425047	97	2.0	98	79	2	211	25	8	21	44	1.80
62424782--62425109	181	1.8	180	87	2	496	25	7	23	43	1.80
62430517--62430574	29	2.0	29	86	0	80	37	10	15	36	1.82
62433485--62433525	18	2.2	20	86	8	59	73	2	2	21	1.07
62435243--62435274	15	2.2	15	94	5	57	56	21	0	21	1.43
62439681--62439719	20	1.9	20	84	5	51	33	7	12	46	1.71
62439816--62440593	192	4.2	185	89	5	1201	29	9	13	47	1.74
62439816--62440587	376	2.1	371	91	5	1234	29	9	13	47	1.74
62440491--62440715	122	1.8	122	97	0	423	33	9	15	40	1.80
62440613--62441020	181	2.2	180	92	4	667	29	9	13	47	1.74
62441671--62441833	85	1.9	84	85	3	220	30	14	19	35	1.91
62443859--62443892	17	2.0	17	100	0	68	11	11	23	52	1.70
62445488--62445520	15	2.1	16	88	5	50	72	0	0	27	0.85
62447163--62447267	41	2.5	41	93	3	174	20	10	12	57	1.64
62451291--62451436	54	2.7	55	80	10	160	32	21	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62454684--62454710	11	2.5	11	100	0	54	40	0	0	59	0.98
62455540--62455568	3	9.7	3	100	0	58	65	0	0	34	0.93
62459362--62459816	174	2.6	174	90	0	712	31	13	19	35	1.91
62470681--62470721	21	2.0	21	85	4	57	56	9	0	34	1.32
62470975--62471016	17	2.4	17	84	11	50	35	2	4	57	1.33
62470947--62471027	26	3.0	29	71	14	73	39	1	2	56	1.20
62479208--62479286	8	9.1	8	70	15	50	53	0	2	44	1.14
62479199--62479252	27	2.0	27	92	3	92	50	0	0	50	1.00
62483751--62484370	81	7.8	79	81	6	597	43	9	16	31	1.79
62483790--62484370	161	3.6	158	81	7	607	43	9	16	31	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207