genome.fa.s19.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  126  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38472709--38472752	13	3.4	13	75	12	54	31	18	11	38	1.86
38472703--38472752	26	1.9	26	95	0	91	32	18	12	38	1.87
38473438--38473496	20	3.2	18	79	13	66	22	0	3	74	0.96
38473528--38473576	24	2.0	24	92	0	80	36	18	10	34	1.85
38476178--38476225	21	2.3	20	86	10	62	27	0	4	68	1.07
38485058--38485168	40	2.8	39	82	5	116	25	21	28	24	1.99
38492897--38492981	43	2.1	42	86	8	122	24	17	27	30	1.97
38501539--38501716	27	6.6	27	84	3	205	29	28	15	26	1.96
38501560--38501715	82	1.9	81	88	3	233	29	28	15	26	1.96
38505430--38505509	40	2.0	40	97	0	151	20	23	25	31	1.98
38512980--38513970	70	14.2	70	79	2	736	34	24	17	23	1.96
38512982--38513950	140	6.9	139	79	2	854	34	24	17	23	1.96
38512980--38513970	210	4.7	210	79	4	890	34	24	17	23	1.96
38514124--38514194	18	3.9	18	75	1	61	30	5	18	45	1.72
38518100--38518161	25	2.5	25	84	5	63	24	29	12	33	1.92
38518116--38518171	25	2.2	25	83	0	67	21	26	21	30	1.98
38519233--38519262	12	2.5	12	94	0	51	36	26	33	3	1.73
38522320--38522564	122	2.0	123	91	2	404	37	13	19	29	1.90
38532504--38532539	18	2.0	18	88	0	54	11	30	8	50	1.67
38532628--38532698	3	23.7	3	91	0	115	2	1	28	67	1.13
38534335--38534364	10	3.0	10	95	0	51	6	0	3	90	0.56
38545563--38545612	21	2.4	21	75	0	55	22	2	2	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38552048--38552103	23	2.4	23	79	5	60	35	7	1	55	1.38
38556150--38556217	18	3.8	18	78	7	59	54	1	1	42	1.18
38557293--38557321	13	2.1	14	93	6	51	65	0	0	34	0.93
38558276--38558331	14	3.7	15	75	13	53	35	0	5	58	1.21
38560787--38560846	30	2.0	30	100	0	120	50	10	3	36	1.53
38563204--38563249	24	1.9	24	86	8	67	47	10	4	36	1.58
38565629--38565754	30	4.2	30	81	5	157	41	18	9	30	1.82
38565631--38565744	60	1.9	59	90	1	183	40	19	9	30	1.83
38565699--38565765	29	2.2	29	84	5	80	47	17	7	26	1.74
38585211--38585256	19	2.4	19	85	7	58	23	17	2	56	1.52
38586348--38586445	37	2.6	37	80	4	108	30	13	18	37	1.89
38589890--38589941	28	1.9	26	88	7	77	48	0	7	44	1.31
38590510--38590677	85	2.0	85	98	0	327	32	12	24	30	1.92
38590926--38591087	41	3.9	41	83	0	189	22	17	22	37	1.94
38590930--38591087	82	1.9	82	84	0	208	22	17	22	37	1.94
38597926--38597977	28	1.9	26	88	7	77	48	0	7	44	1.31
38598886--38599038	41	3.7	41	85	0	171	18	18	25	36	1.94
38598886--38599039	82	1.9	82	86	0	218	18	18	25	37	1.94
38613361--38613403	19	2.3	18	84	7	59	74	2	0	23	0.93
38616479--38616543	25	2.6	25	83	11	73	49	0	1	49	1.10
38616746--38616806	23	2.7	22	69	18	54	31	9	4	54	1.55
38622899--38622977	30	2.7	29	84	5	88	41	26	20	11	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38623862--38623951	44	2.0	44	97	0	171	30	16	18	34	1.94
38626617--38626676	18	3.7	15	72	24	50	66	1	1	30	1.11
38627739--38627799	32	2.0	30	90	6	95	14	6	40	37	1.72
38627746--38627798	16	3.3	16	74	10	54	16	3	41	37	1.67
38628152--38628354	44	4.7	43	79	8	225	29	20	19	30	1.97
38628454--38628853	45	8.9	45	93	0	649	29	25	17	27	1.98
38628465--38628853	179	2.2	180	92	0	645	29	25	17	27	1.97
38641128--38641157	9	3.4	9	95	4	53	66	10	0	23	1.21
38641601--38641663	3	20.0	3	76	12	56	66	3	1	28	1.16
38641602--38641665	15	4.1	15	80	13	67	68	3	1	26	1.13
38641593--38641663	12	5.9	12	73	20	51	67	2	1	28	1.13
38644204--38644292	7	11.4	7	70	21	54	67	2	0	30	1.03
38644197--38644292	23	4.0	23	70	21	81	64	2	0	33	1.05
38644209--38644294	16	5.3	16	73	17	61	68	2	0	29	1.02
38644291--38644354	28	2.3	28	74	12	69	54	4	1	39	1.31
38644510--38644566	19	3.0	20	75	10	57	54	0	0	45	0.99
38645813--38646176	124	2.9	124	90	1	550	29	14	21	33	1.94
38651997--38652045	20	2.4	20	79	3	53	24	20	4	51	1.65
38654859--38654915	29	1.9	30	82	10	73	0	26	7	66	1.17
38660718--38660858	65	2.2	65	81	2	158	25	17	20	36	1.95
38660915--38660970	26	2.2	26	86	0	76	25	17	17	39	1.92
38673068--38673117	17	2.9	17	96	3	91	10	48	30	12	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38675954--38676011	26	2.2	26	87	0	80	27	17	15	39	1.90
38676060--38676116	26	2.2	26	84	6	71	15	17	24	42	1.88
38680949--38681098	44	3.4	44	69	9	117	36	10	18	36	1.84
38687566--38687603	13	3.0	13	84	3	51	39	21	0	39	1.53
38690713--38690804	47	2.0	46	89	2	139	35	21	10	31	1.88
38690850--38690890	20	2.0	21	90	4	66	36	12	0	51	1.40
38699575--38699642	10	6.6	10	74	15	50	33	4	2	58	1.33
38699596--38699634	10	3.8	10	86	6	51	30	2	2	64	1.21
38706758--38706796	19	2.1	19	90	0	60	38	0	17	43	1.50
38706837--38706875	18	2.2	18	90	0	60	41	2	7	48	1.45
38708450--38708495	16	2.9	16	81	12	58	19	4	4	71	1.20
38713832--38713879	24	2.0	24	100	0	96	37	0	12	50	1.41
38713841--38713892	24	2.2	24	82	0	59	42	3	9	44	1.55
38720333--38720392	19	3.1	19	82	2	66	31	3	3	61	1.28
38723218--38723262	14	3.2	15	78	15	51	64	0	11	24	1.26
38723288--38723329	22	2.0	22	85	4	59	69	0	14	16	1.20
38723753--38723792	6	6.5	6	88	5	62	17	2	0	80	0.83
38724343--38724387	19	2.3	20	81	14	58	28	2	0	68	1.01
38724941--38724973	16	2.1	16	94	0	57	12	0	9	78	0.95
38724914--38724971	24	2.5	23	88	5	82	13	3	8	74	1.19
38727310--38727334	7	3.6	7	100	0	50	28	0	0	72	0.86
38730431--38730524	47	2.0	48	85	6	129	32	28	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38751781--38751819	20	2.0	20	90	10	62	51	30	5	12	1.62
38754502--38754548	24	2.0	24	86	0	67	36	23	4	36	1.75
38754904--38754957	26	2.1	26	100	0	108	46	11	14	27	1.79
38756232--38756269	19	2.0	19	100	0	76	52	10	0	36	1.36
38758368--38758400	16	2.1	16	100	0	66	36	6	36	21	1.78
38758614--38758655	15	2.7	16	82	14	52	52	2	0	45	1.13
38758623--38758664	15	2.9	15	82	10	52	52	0	0	47	1.00
38758612--38759148	120	4.5	120	95	0	916	49	5	2	42	1.40
38758874--38758908	18	2.0	17	88	5	52	54	0	0	45	0.99
38758994--38759028	18	2.0	17	88	5	52	54	0	0	45	0.99
38761390--38761523	46	3.3	38	81	16	171	54	10	29	5	1.56
38773659--38773725	25	2.7	25	83	0	80	32	16	25	25	1.96
38773808--38773854	22	2.1	23	84	4	60	31	21	27	19	1.97
38773847--38773906	26	2.3	26	82	0	75	38	21	21	18	1.94
38774362--38774395	15	2.2	15	89	5	50	26	20	8	44	1.81
38788085--38788332	44	5.7	43	70	7	153	31	21	20	26	1.98
38800257--38800384	25	5.0	25	88	2	166	42	9	16	31	1.80
38800299--38800403	25	4.2	24	90	4	104	40	4	19	35	1.72
38806958--38806999	13	3.2	13	74	12	50	52	0	2	45	1.13
38813537--38813606	30	2.3	30	92	0	113	40	14	10	35	1.79
38819313--38819360	16	2.9	17	78	15	55	41	2	2	54	1.24
38819320--38819364	22	2.0	22	87	8	65	40	2	0	57	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38820830--38820888	29	2.0	29	100	0	118	30	13	20	35	1.91
38831100--38831169	27	2.4	29	76	9	72	31	14	8	45	1.75
38844422--38844475	28	1.9	28	82	14	67	59	0	0	40	0.98
38844409--38844475	21	3.1	21	80	4	71	55	0	1	43	1.09
38874230--38874441	76	2.8	75	87	3	291	22	20	25	32	1.98
38881659--38881990	33	9.6	33	70	22	193	19	18	28	32	1.96
38881657--38881918	102	2.5	102	89	3	380	19	19	28	33	1.96
38881787--38881990	75	2.7	76	93	0	338	21	18	27	31	1.97
38881787--38881996	76	2.8	75	92	0	339	21	19	27	31	1.98
38892953--38892991	17	2.3	17	86	8	53	41	0	17	41	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207