genome.fa.s19.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  166  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51280894--51280978	36	2.5	33	88	5	125	22	15	16	45	1.84
51286211--51286317	49	2.2	48	81	5	117	26	21	14	37	1.92
51287518--51287605	44	2.0	44	100	0	176	31	18	22	27	1.97
51288136--51288229	19	4.8	19	89	5	143	36	10	17	36	1.84
51288136--51288229	40	2.4	38	91	3	143	36	10	17	36	1.84
51288187--51288265	22	3.7	22	77	12	58	34	5	16	44	1.70
51289541--51289737	98	2.0	98	93	0	340	28	9	23	38	1.85
51291644--51291668	11	2.3	11	100	0	50	44	0	0	56	0.99
51294440--51294620	54	3.4	54	81	2	213	28	18	16	37	1.92
51294454--51294617	27	6.1	27	78	2	116	29	17	15	38	1.90
51296973--51297057	27	3.1	27	82	0	71	23	30	11	34	1.91
51297177--51297331	54	2.9	53	77	10	145	26	23	17	32	1.97
51297199--51297331	27	5.0	26	83	1	140	28	22	17	31	1.96
51309646--51309985	51	6.7	51	77	7	327	29	27	15	27	1.96
51309643--51309985	102	3.4	102	82	4	401	29	27	16	27	1.97
51309641--51309984	153	2.3	150	78	7	374	29	27	15	27	1.96
51317155--51317497	51	6.8	51	78	6	272	30	26	14	27	1.95
51317156--51317497	102	3.4	101	80	4	363	30	26	14	27	1.95
51317154--51317496	153	2.3	149	78	5	359	30	26	14	28	1.95
51322837--51322876	18	2.2	18	86	0	53	20	20	27	32	1.97
51330609--51330642	17	2.0	17	100	0	68	47	17	0	35	1.48
51337570--51337687	54	2.3	50	82	10	132	27	11	20	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51340973--51341027	27	2.0	27	82	10	67	47	1	9	41	1.46
51341660--51341685	13	2.0	13	100	0	52	46	0	0	53	1.00
51347254--51347296	12	3.5	12	78	6	50	34	25	0	39	1.56
51347459--51347565	23	4.9	23	85	8	152	37	24	21	16	1.94
51347891--51347965	19	4.0	19	72	20	77	37	26	0	36	1.57
51348852--51348893	15	2.7	15	88	3	57	4	19	2	73	1.12
51348902--51348970	5	13.4	5	76	15	61	55	4	0	40	1.20
51348902--51348943	21	2.0	21	95	0	75	54	0	0	45	0.99
51350589--51350652	12	5.3	12	71	0	56	54	21	12	10	1.68
51350580--51350652	24	3.0	24	97	0	137	52	23	12	12	1.72
51350945--51350972	13	2.2	13	100	0	56	46	25	7	21	1.76
51351906--51351973	22	3.1	22	81	8	84	39	20	23	16	1.91
51351968--51352033	22	2.7	23	79	13	71	30	18	31	19	1.96
51351906--51352035	47	2.8	45	79	5	136	36	20	26	16	1.94
51351979--51352021	22	2.0	22	95	0	77	30	20	32	16	1.95
51352987--51353020	17	2.0	17	88	0	50	35	11	17	35	1.87
51360504--51360559	15	3.7	15	87	0	85	19	8	39	32	1.83
51362801--51362848	21	2.3	21	92	0	78	25	25	31	18	1.98
51363962--51363997	18	1.9	19	94	5	65	50	5	0	44	1.25
51377974--51378086	27	4.2	26	76	5	100	17	15	32	33	1.92
51377992--51378153	54	3.0	52	78	7	144	18	16	32	33	1.93
51378077--51378177	27	3.7	27	74	2	87	20	18	31	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51382781--51382822	18	2.3	19	83	4	50	11	11	7	69	1.37
51382787--51382823	19	2.0	18	89	5	56	10	13	5	70	1.32
51383607--51383665	27	2.3	27	81	18	74	66	3	8	22	1.34
51388031--51388064	12	2.8	12	95	0	59	58	0	23	17	1.38
51388030--51388064	18	1.9	18	94	0	61	60	0	22	17	1.37
51396543--51396573	13	2.4	13	100	0	62	22	0	0	77	0.77
51396764--51396828	8	7.9	8	76	6	67	15	4	12	67	1.37
51399921--51400062	10	14.3	10	71	19	84	69	0	28	1	0.97
51399921--51400092	4	44.0	4	70	23	68	68	0	29	1	1.01
51399920--51400056	31	4.3	30	79	12	130	69	0	29	1	0.97
51399921--51400088	10	15.8	10	67	21	76	68	0	29	1	1.01
51399921--51400062	14	9.2	14	73	17	97	69	0	28	1	0.97
51400339--51400369	15	2.1	15	93	0	53	80	3	9	6	0.99
51400611--51400640	16	1.9	15	93	6	51	70	0	3	26	1.03
51400420--51401196	160	4.9	154	76	13	770	50	7	10	31	1.65
51400420--51401196	318	2.4	318	92	1	1299	50	7	10	31	1.65
51403264--51403296	14	2.4	14	100	0	66	36	6	0	57	1.23
51406336--51406461	40	3.1	41	77	10	109	48	12	5	33	1.64
51406616--51406654	10	3.8	10	83	6	51	2	23	0	74	0.94
51406743--51406832	27	3.3	27	92	3	146	18	24	34	22	1.96
51412067--51412113	4	11.5	4	86	4	67	72	4	0	23	1.02
51412998--51413054	22	2.6	22	83	8	71	43	17	3	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51413014--51413108	19	4.7	19	85	10	91	40	17	8	33	1.80
51413027--51413104	19	4.0	21	84	12	105	37	19	8	34	1.83
51413027--51413104	40	2.0	38	90	5	120	37	19	8	34	1.83
51436024--51436288	134	2.0	132	91	2	424	38	14	15	31	1.87
51443673--51443718	14	3.1	14	87	6	56	71	0	15	13	1.14
51444977--51445494	44	11.1	44	65	22	166	33	17	21	28	1.96
51444987--51445589	142	4.2	142	94	0	1026	33	17	20	28	1.95
51445645--51446069	50	8.5	50	72	4	338	34	22	19	24	1.97
51445639--51446017	100	3.8	99	86	1	472	33	22	19	23	1.97
51453335--51453374	17	2.2	19	86	8	57	65	0	15	20	1.28
51455185--51455233	23	2.1	23	88	0	71	26	18	18	36	1.94
51455208--51455798	199	3.0	199	95	0	1083	30	16	18	34	1.93
51456784--51456829	24	2.0	23	83	8	58	52	2	2	43	1.25
51474437--51474466	14	2.1	14	100	0	60	36	13	0	50	1.42
51474560--51474598	20	2.0	20	100	0	78	56	38	5	0	1.22
51488499--51488687	44	4.3	44	70	9	127	31	20	22	25	1.98
51488634--51488753	44	2.7	43	79	6	109	34	19	22	24	1.97
51489224--51489275	20	2.6	20	81	0	77	48	38	9	3	1.54
51496551--51496581	15	2.1	15	93	0	53	25	3	19	51	1.62
51497040--51497081	21	2.0	21	95	0	75	23	26	23	26	2.00
51501463--51501522	30	2.0	30	86	0	84	16	20	40	23	1.91
51501479--51501551	30	2.4	30	83	2	83	16	19	41	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51507743--51507787	19	2.3	19	84	3	54	31	6	0	62	1.21
51507821--51507863	16	2.8	15	79	6	50	34	4	4	55	1.41
51510043--51510084	22	1.9	22	85	9	59	28	14	2	54	1.52
51510402--51510469	30	2.2	31	84	2	84	48	5	19	26	1.71
51516018--51516048	12	2.5	13	94	5	55	16	22	0	61	1.34
51523270--51523339	36	1.9	36	86	11	99	32	4	1	61	1.24
51523805--51523850	7	6.6	7	100	0	92	54	0	0	45	0.99
51524053--51524116	34	1.9	33	81	12	78	60	0	3	35	1.12
51527137--51527192	25	2.2	25	87	0	76	28	19	21	30	1.98
51530518--51530550	2	16.5	2	100	0	66	0	51	0	48	1.00
51533287--51533318	6	5.3	6	96	0	55	50	31	15	3	1.60
51533836--51533887	16	3.2	16	86	0	68	51	3	17	26	1.62
51535771--51535913	48	3.0	48	84	4	189	16	37	12	33	1.87
51545122--51545181	23	2.7	23	89	2	95	31	3	38	26	1.73
51545875--51545914	19	2.0	21	85	9	57	22	0	5	72	1.04
51559484--51559628	53	2.7	53	90	3	229	36	14	22	26	1.93
51559812--51560056	29	8.6	28	72	11	169	33	18	22	25	1.96
51559792--51560056	57	4.7	56	79	7	241	33	18	22	26	1.96
51559791--51560056	114	2.3	113	81	7	306	33	18	22	25	1.96
51564209--51564491	139	2.0	139	97	0	541	28	25	14	31	1.94
51568373--51568407	14	2.5	14	80	0	52	65	0	0	34	0.93
51572928--51572989	4	15.5	4	100	0	124	50	24	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51582024--51582358	50	6.7	48	77	9	303	23	18	26	30	1.98
51582020--51582358	101	3.4	101	92	0	561	23	19	26	30	1.98
51582027--51582412	51	7.7	49	75	7	265	24	18	26	29	1.98
51582476--51582608	33	3.7	34	74	17	126	21	21	26	30	1.99
51582430--51582607	75	2.3	75	87	6	252	22	19	26	31	1.98
51583380--51583478	49	2.0	49	86	0	135	26	14	28	31	1.95
51586203--51586233	15	2.1	15	100	0	62	45	6	12	35	1.68
51589894--51590061	87	1.9	87	85	3	232	38	15	8	37	1.78
51590243--51590329	10	8.8	10	70	9	54	62	1	1	35	1.11
51590234--51590307	29	2.6	29	86	0	112	60	0	2	36	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207