genome.fa.s19.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  19  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5645561--5645616	17	3.2	17	85	10	60	53	5	0	41	1.24
5645575--5645616	17	2.4	17	92	4	66	50	7	0	42	1.30
5664141--5664270	50	2.6	50	84	6	156	23	17	27	31	1.97
5664279--5664366	45	2.0	45	95	0	158	26	18	22	32	1.97
5666688--5666739	27	1.9	27	88	0	77	30	17	5	46	1.71
5668558--5668605	21	2.3	21	81	0	60	45	8	14	31	1.74
5672934--5672978	3	15.0	3	95	0	63	26	0	40	33	1.57
5675730--5675781	18	2.9	17	77	8	59	21	3	0	75	0.97
5689419--5689447	15	1.9	15	100	0	58	55	0	17	27	1.42
5689444--5689471	3	9.3	3	100	0	56	67	0	0	32	0.91
5690527--5690557	16	1.9	16	93	0	53	25	25	38	9	1.86
5691355--5691538	50	3.7	49	80	2	215	25	19	22	33	1.97
5691357--5691537	100	1.8	100	92	2	310	25	19	21	33	1.97
5703081--5703187	43	2.5	44	80	7	121	28	16	22	32	1.96
5704544--5704613	29	2.5	30	84	9	85	22	4	2	70	1.19
5715788--5715842	26	2.1	25	80	12	58	36	9	14	40	1.78
5720019--5720226	100	2.1	100	99	0	407	28	22	13	35	1.92
5722259--5722318	25	2.4	25	77	0	66	15	26	18	40	1.90
5722274--5722511	49	4.8	48	73	12	162	18	23	21	36	1.94
5722268--5722510	25	9.8	24	73	13	133	18	23	20	37	1.94
5722268--5722484	99	2.2	99	80	5	226	18	22	20	38	1.94
5722445--5722559	25	4.6	25	74	9	85	22	22	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5737046--5737099	3	18.0	3	100	0	108	33	0	0	66	0.92
5737293--5737410	42	2.8	42	85	1	155	27	17	20	33	1.95
5742547--5742612	29	2.3	28	79	7	69	59	7	4	28	1.45
5743350--5743379	15	2.1	15	93	6	53	60	26	0	13	1.34
5746471--5746529	30	2.0	30	96	0	109	45	13	11	28	1.79
5755841--5755888	21	2.3	20	79	10	51	25	2	35	37	1.68
5755946--5755996	21	2.4	21	100	0	102	17	0	49	33	1.47
5757418--5757464	22	2.1	22	96	0	85	40	2	12	44	1.54
5758666--5758710	18	2.5	18	88	0	72	51	11	0	37	1.38
5758732--5758765	17	1.9	18	88	5	52	38	5	0	55	1.24
5758906--5759296	9	43.2	9	76	10	370	46	17	0	35	1.53
5764957--5765054	23	4.3	23	90	2	162	31	26	21	20	1.98
5764964--5765052	45	2.0	45	95	0	160	31	26	22	19	1.97
5767405--5767452	21	2.3	21	89	7	71	33	18	43	4	1.69
5767869--5767963	42	2.2	42	84	1	127	29	16	23	30	1.96
5767928--5768093	43	3.9	43	81	4	167	25	21	21	31	1.98
5767928--5768096	86	2.0	86	81	4	198	25	20	21	32	1.98
5770024--5770059	17	2.1	17	94	0	63	25	13	16	44	1.85
5785057--5785092	18	2.0	18	88	0	54	44	0	2	52	1.15
5797793--5797852	30	2.0	31	86	3	86	40	0	40	20	1.52
5798066--5798102	9	4.1	9	86	13	58	32	10	10	45	1.74
5801946--5802011	21	3.1	21	88	0	96	4	46	18	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5806182--5806242	16	3.8	16	72	8	52	24	22	42	9	1.84
5806722--5806776	28	2.0	28	92	0	92	32	5	7	54	1.51
5807857--5807900	23	1.9	23	81	9	54	54	9	2	34	1.44
5808603--5809061	113	4.1	114	85	3	594	31	26	18	23	1.97
5809197--5809446	84	3.0	84	92	3	425	36	27	19	16	1.93
5808892--5809364	198	2.4	191	89	5	693	33	26	18	21	1.96
5809445--5809544	40	2.5	39	80	3	110	14	20	21	45	1.85
5811845--5811880	12	2.9	12	88	8	54	55	0	0	44	0.99
5811845--5811877	13	2.6	13	90	4	50	60	0	0	39	0.97
5811970--5812033	22	3.0	22	73	13	62	48	7	1	42	1.41
5818019--5818058	6	6.7	6	86	11	55	0	45	2	52	1.14
5821083--5821119	2	18.5	2	100	0	74	51	0	48	0	1.00
5828984--5829019	17	2.1	18	89	5	56	55	0	0	44	0.99
5830728--5830863	40	3.4	38	78	7	130	39	22	19	18	1.92
5830903--5831088	41	4.5	42	78	5	220	23	21	23	31	1.98
5830903--5831088	83	2.3	81	83	3	239	23	21	23	31	1.98
5832225--5832252	10	2.8	10	100	0	56	57	0	0	42	0.99
5838575--5838908	86	3.9	86	83	4	390	22	18	29	29	1.98
5838595--5838888	42	6.9	43	85	3	371	22	18	29	29	1.97
5838980--5839022	22	2.0	22	95	0	77	46	27	16	9	1.77
5841471--5841514	21	2.1	21	100	0	88	38	9	13	38	1.77
5841470--5841525	21	2.8	19	87	10	85	37	8	16	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5841732--5841770	19	2.0	21	85	10	55	15	10	5	69	1.34
5845111--5845158	24	2.0	24	95	0	87	47	12	18	20	1.81
5846804--5846838	15	2.3	15	100	0	70	48	22	22	5	1.72
5857097--5857139	20	2.2	19	87	4	59	67	0	4	27	1.10
5858500--5858542	7	6.1	7	97	0	68	41	39	0	18	1.51
5866756--5866805	24	2.1	24	88	7	75	22	10	26	42	1.84
5867231--5867471	123	2.0	124	88	2	360	41	22	13	23	1.89
5867835--5867884	24	2.1	24	100	0	100	42	4	22	32	1.72
5878509--5878563	27	2.0	27	100	0	110	36	25	3	34	1.74
5879246--5879642	185	2.2	187	87	4	576	27	21	14	36	1.92
5884291--5884583	94	3.3	89	76	13	246	23	16	25	34	1.96
5884597--5884649	13	4.1	13	80	0	70	28	5	28	37	1.80
5895114--5895317	41	5.0	41	88	0	300	24	25	19	30	1.98
5895108--5895324	82	2.6	82	91	1	355	24	26	18	30	1.98
5897966--5898072	40	2.7	39	82	5	135	32	8	15	42	1.77
5900068--5900115	19	2.5	20	80	10	64	37	0	6	56	1.25
5900000--5900102	46	2.3	43	79	14	104	50	1	2	44	1.28
5909261--5909304	23	1.9	23	85	0	61	54	4	0	40	1.21
5909750--5909774	12	2.1	12	100	0	50	32	0	0	68	0.90
5914989--5915038	21	2.5	20	83	6	66	26	2	4	68	1.18
5917914--5917975	31	2.0	31	96	0	115	17	9	17	54	1.69
5917917--5917967	15	3.3	15	70	24	52	17	7	17	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5917918--5917968	16	3.2	16	68	15	52	17	7	15	58	1.60
5922326--5922366	21	2.0	21	90	9	66	31	9	7	51	1.62
5923483--5923534	18	2.8	19	82	8	54	46	0	3	50	1.20
5928809--5929462	113	5.8	112	86	2	736	30	17	23	28	1.97
5929775--5929823	22	2.3	21	79	10	55	18	0	32	48	1.48
5930456--5930510	11	4.9	11	76	12	58	65	1	1	30	1.13
5930452--5930520	34	2.0	34	100	0	138	62	2	2	31	1.25
5931717--5931920	89	2.3	89	94	0	363	21	13	22	42	1.88
5931904--5931934	13	2.4	13	94	0	53	6	9	25	58	1.54
5932118--5932186	21	3.3	21	87	0	93	39	18	37	4	1.71
5932151--5932219	33	2.1	33	88	0	102	40	17	36	5	1.74
5932183--5932222	21	1.9	21	94	0	71	37	17	40	5	1.72
5932653--5932937	42	6.7	42	86	4	344	26	21	21	30	1.98
5932696--5932943	126	2.0	127	90	2	392	26	20	21	31	1.98
5934892--5934927	12	3.0	12	100	0	72	50	0	8	41	1.33
5936090--5936130	19	2.2	18	86	4	55	53	0	21	24	1.46
5937539--5937632	49	1.9	49	93	4	163	44	7	24	23	1.79
5949980--5950050	21	3.4	21	94	0	115	30	36	8	23	1.85
5950533--5950580	11	4.4	11	78	0	51	64	10	6	18	1.45
5950534--5950576	22	2.0	22	90	0	68	62	11	6	18	1.50
5950541--5950586	11	4.2	11	80	0	56	58	10	10	19	1.61
5962803--5962882	39	2.1	39	97	0	151	22	16	12	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5967111--5967164	26	2.0	26	82	7	63	50	1	1	46	1.23
5969779--5969827	19	2.6	19	77	3	55	61	6	0	32	1.21
5969802--5969851	25	2.0	25	88	0	73	54	8	0	38	1.30
5971864--5972015	43	3.5	43	74	11	116	25	17	26	30	1.97
5974920--5974944	7	3.6	7	100	0	50	56	0	16	28	1.41
5978671--5978815	71	2.0	71	97	2	274	28	13	15	42	1.85
5992601--5992695	37	2.6	37	88	1	147	38	31	12	16	1.86
5995114--5995145	16	2.0	16	93	0	55	68	3	0	28	1.04
6001305--6001368	25	2.5	26	84	2	76	32	17	23	26	1.96
6015820--6015855	17	2.1	18	94	5	65	19	5	0	75	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207