genome.fa.s19.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  189  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57343957--57344169	106	2.0	106	100	0	426	26	14	11	47	1.77
57345869--57345898	2	15.5	2	93	6	53	46	0	0	53	1.00
57352622--57352652	8	3.8	8	91	8	53	9	51	12	25	1.70
57352867--57352912	15	3.1	14	80	17	56	8	8	2	80	0.99
57352873--57352912	15	2.6	16	85	14	57	5	10	2	82	0.91
57352971--57352995	1	25.0	1	100	0	50	100	0	0	0	0.00
57353553--57353602	3	16.7	3	79	8	57	30	6	2	62	1.31
57353636--57353684	24	2.1	23	82	14	57	38	8	2	51	1.43
57353731--57353810	36	2.2	36	80	8	92	36	8	2	52	1.46
57358676--57358705	8	3.6	8	91	8	51	73	13	0	13	1.10
57359542--57359592	23	2.2	22	82	6	57	80	0	11	7	0.90
57360831--57361435	88	6.9	88	96	0	1097	27	20	24	27	1.99
57361451--57361731	44	6.4	44	71	9	171	29	19	23	27	1.98
57361422--57361692	44	6.2	44	73	10	171	30	21	23	25	1.99
57362089--57362119	8	3.8	8	91	8	53	9	51	12	25	1.70
57362334--57362379	15	3.1	14	80	17	56	8	8	2	80	0.99
57362340--57362379	15	2.6	16	85	14	57	5	10	2	82	0.91
57363016--57363068	3	17.7	3	80	7	63	30	5	1	62	1.29
57363102--57363150	24	2.1	23	82	14	57	38	8	2	51	1.43
57363197--57363274	34	2.2	34	80	8	86	35	8	2	52	1.47
57367970--57368078	34	3.3	33	80	14	134	54	1	0	43	1.17
57367994--57368047	17	3.3	17	70	17	51	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57367997--57368053	15	3.7	15	71	17	53	54	3	0	42	1.17
57368081--57368150	21	3.1	22	74	14	63	48	0	0	51	1.00
57372086--57372156	30	2.4	30	90	0	115	25	16	21	36	1.94
57374311--57374368	30	1.9	30	89	0	89	41	3	24	31	1.71
57374579--57374610	13	2.5	13	94	0	55	31	0	12	56	1.37
57374705--57374946	50	4.7	50	84	4	288	26	23	29	20	1.99
57374705--57374954	100	2.4	103	86	6	355	26	23	29	21	1.99
57380654--57380703	27	1.9	26	88	8	75	72	6	2	20	1.16
57385933--57386152	6	37.0	6	98	1	426	50	16	0	33	1.46
57390058--57390105	6	8.2	6	93	2	80	64	0	35	0	0.94
57396537--57396569	3	11.0	3	93	0	57	30	0	0	69	0.88
57409037--57409065	5	6.0	5	92	8	51	41	0	0	58	0.98
57409810--57409856	24	2.0	24	84	16	62	31	0	17	51	1.46
57411656--57411728	29	2.6	29	86	2	94	31	24	17	26	1.97
57415403--57415447	15	2.9	16	78	15	51	22	20	0	57	1.40
57415389--57415474	43	2.0	43	90	0	136	22	20	2	54	1.56
57427500--57427537	17	2.2	18	86	9	53	42	0	0	57	0.98
57427499--57427537	18	2.2	18	86	4	53	41	0	0	58	0.98
57427519--57427578	18	2.9	20	80	19	70	45	0	5	50	1.23
57427518--57427582	19	3.2	20	81	18	73	41	0	4	53	1.21
57430840--57430884	24	1.9	23	90	4	72	37	2	13	46	1.55
57434070--57434101	11	2.9	11	95	0	55	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57437492--57437559	33	2.1	33	88	0	100	20	20	22	36	1.95
57438374--57438465	18	5.2	18	85	2	132	29	23	15	31	1.95
57438378--57438465	35	2.5	36	90	3	142	29	23	14	31	1.95
57450921--57451199	123	2.3	124	92	1	472	30	15	20	33	1.94
57453220--57453420	29	7.0	29	90	1	314	30	1	23	44	1.63
57453220--57453420	86	2.3	87	91	0	332	30	1	23	44	1.63
57455581--57455636	25	2.3	25	80	14	64	62	5	0	32	1.18
57455727--57455796	30	2.4	30	92	2	115	64	0	0	35	0.94
57455727--57455773	20	2.3	20	77	0	58	63	0	0	36	0.94
57455826--57455876	22	2.3	21	83	9	66	35	0	33	31	1.58
57455848--57455906	30	2.0	30	89	0	91	35	0	33	30	1.58
57455825--57455979	52	3.0	52	97	0	283	35	0	33	30	1.58
57455878--57455928	22	2.3	22	93	0	84	35	0	35	29	1.58
57455900--57455958	30	2.0	30	93	0	100	33	0	35	30	1.58
57455930--57455979	22	2.3	22	96	0	91	38	0	34	28	1.57
57457172--57457227	19	2.9	19	79	10	60	32	1	0	66	1.03
57477256--57477317	9	6.9	9	88	0	88	33	25	11	29	1.91
57477256--57477317	18	3.4	18	93	0	97	33	25	11	29	1.91
57477256--57477317	27	2.3	27	94	0	106	33	25	11	29	1.91
57483652--57484047	110	3.6	109	92	1	614	34	18	15	32	1.92
57484656--57484727	16	4.8	16	72	16	55	56	4	2	36	1.33
57484657--57484721	14	4.5	13	80	14	58	58	3	3	35	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57484756--57484822	3	22.3	3	78	6	73	64	5	0	29	1.17
57492278--57492309	16	2.0	17	88	11	50	28	12	6	53	1.62
57494161--57494192	14	2.3	14	100	0	64	31	46	15	6	1.71
57496609--57496651	18	2.4	18	88	7	61	46	0	0	53	1.00
57500024--57500068	23	1.9	24	86	4	65	40	6	2	51	1.41
57500995--57501039	23	2.0	23	86	0	63	33	0	6	60	1.23
57502943--57503037	49	1.9	50	85	10	133	36	20	25	17	1.94
57502942--57503061	25	4.8	25	72	13	95	36	20	25	17	1.94
57505176--57505305	47	2.7	46	81	8	152	20	29	21	29	1.98
57505290--57505319	14	2.1	14	100	0	60	30	23	20	26	1.98
57505240--57505369	64	2.0	64	90	0	206	22	29	19	29	1.98
57505779--57505875	42	2.3	42	85	3	133	19	25	14	40	1.90
57508088--57508163	38	2.0	38	94	0	134	50	3	1	44	1.29
57509869--57509924	28	2.0	28	89	0	85	57	8	0	33	1.30
57512965--57513009	23	2.0	23	86	0	63	40	6	0	53	1.27
57513252--57513282	2	15.5	2	100	0	62	0	48	0	51	1.00
57513351--57513829	160	3.0	164	92	4	798	17	9	13	59	1.60
57514149--57514187	15	2.9	13	88	11	53	5	5	5	84	0.86
57533626--57533664	18	2.2	18	85	0	51	51	5	2	41	1.38
57533816--57533841	11	2.4	11	100	0	52	7	0	7	84	0.77
57541532--57541628	22	3.9	25	74	22	98	35	4	9	51	1.53
57541533--57541640	52	2.1	52	100	0	216	34	3	11	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57542215--57542292	35	2.2	35	95	0	138	55	20	6	17	1.64
57545787--57546201	106	3.9	106	77	10	386	25	21	17	35	1.95
57553362--57553422	31	2.0	31	86	0	86	50	6	18	24	1.70
57553367--57553433	31	2.2	31	83	0	80	50	10	14	23	1.74
57557812--57558707	82	10.9	82	92	0	1432	21	19	25	34	1.96
57572620--57572686	30	2.2	31	83	2	82	41	2	13	41	1.59
57574274--57574306	3	11.0	3	100	0	66	66	0	0	33	0.92
57587722--57587760	15	2.7	14	80	7	51	61	0	5	33	1.18
57588432--57588488	23	2.4	25	75	16	66	70	0	0	29	0.88
57589217--57589272	16	3.8	16	68	18	57	48	7	3	41	1.48
57589862--57589920	26	2.3	26	91	5	93	37	8	20	33	1.83
57592356--57592469	29	3.9	29	80	6	113	37	21	2	37	1.68
57592855--57592906	10	5.2	10	80	11	54	76	0	23	0	0.78
57593129--57593239	10	10.9	10	78	16	97	78	0	21	0	0.75
57593129--57593213	11	7.9	11	80	15	106	78	0	21	0	0.74
57593130--57593236	40	2.6	40	85	5	144	78	0	21	0	0.75
57593129--57593239	50	2.2	52	88	9	167	78	0	21	0	0.75
57593157--57593243	18	5.1	17	76	16	81	75	0	24	0	0.80
57593390--57593432	5	8.0	5	89	5	50	34	0	0	65	0.93
57593381--57593431	23	2.2	24	82	10	70	33	0	0	66	0.92
57593389--57593425	6	6.5	6	93	6	60	32	0	0	67	0.91
57593390--57593432	22	2.0	22	90	9	70	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57593595--57593637	20	2.2	20	88	12	63	32	13	9	44	1.76
57593884--57594405	17	28.7	18	70	17	230	31	13	11	42	1.80
57593960--57594003	22	2.0	22	86	8	63	43	9	6	40	1.63
57593960--57594003	23	2.0	22	86	4	61	43	9	6	40	1.63
57593895--57594132	130	1.8	131	81	7	297	31	13	11	42	1.81
57594089--57594135	21	2.2	21	88	7	69	46	12	6	34	1.67
57594163--57594306	74	1.9	73	83	8	184	31	14	12	41	1.83
57594297--57594402	37	2.9	38	78	9	121	31	9	14	45	1.76
57606115--57606711	78	7.8	73	79	8	418	28	17	20	32	1.96
57606109--57606711	149	3.9	150	80	11	600	28	17	20	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207