genome.fa.s19.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  135  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41363756--41363809	24	2.2	24	93	0	90	7	25	16	50	1.71
41364700--41364752	25	2.1	26	86	10	74	60	1	3	33	1.26
41372153--41372190	20	2.0	20	84	5	51	47	7	2	42	1.46
41385062--41385110	24	2.0	24	88	0	71	24	20	24	30	1.98
41385086--41385172	40	2.2	40	87	4	122	24	20	27	27	1.99
41388634--41388800	54	3.1	54	61	13	126	29	11	11	46	1.76
41388593--41388808	108	2.0	108	99	0	423	29	11	11	48	1.74
41390419--41390468	21	2.4	21	75	0	55	30	34	14	22	1.93
41392475--41392516	14	3.0	14	85	0	57	19	2	0	78	0.86
41392671--41392710	20	2.0	20	95	0	71	5	32	50	12	1.62
41393461--41393544	3	28.0	3	77	0	87	29	5	3	60	1.37
41395335--41395368	16	2.1	16	88	0	50	20	14	20	44	1.87
41407089--41407146	24	2.4	24	97	0	107	34	12	24	29	1.91
41407429--41407711	51	5.7	51	81	8	334	28	16	26	28	1.97
41407429--41407711	97	2.9	97	88	2	395	28	16	26	28	1.97
41407428--41407775	51	7.1	51	80	9	323	28	17	25	28	1.98
41407441--41407764	148	2.2	148	84	3	399	29	17	24	29	1.97
41410061--41410720	47	14.1	47	96	1	1191	32	8	29	28	1.88
41410839--41410916	36	2.1	37	90	2	122	24	19	30	25	1.98
41418309--41418366	24	2.4	24	94	0	107	36	12	22	29	1.90
41418663--41419387	97	7.5	97	88	0	1038	28	17	23	30	1.97
41418652--41419383	195	3.8	194	90	1	1135	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41418652--41419387	292	2.5	292	87	0	1080	28	17	23	30	1.97
41422051--41422106	21	2.8	20	72	20	53	48	1	1	48	1.22
41436144--41436211	31	2.2	31	97	0	127	26	13	38	22	1.91
41436175--41436419	47	5.2	47	91	0	364	34	8	30	26	1.86
41440340--41440395	28	2.0	28	100	0	112	50	14	10	25	1.75
41446055--41446104	8	5.3	9	78	21	50	48	0	8	44	1.32
41448187--41448223	6	6.2	6	100	0	74	16	0	0	83	0.64
41450239--41450619	191	2.0	190	97	0	717	26	19	28	25	1.98
41459614--41459648	16	2.2	16	94	0	61	42	5	11	40	1.65
41460881--41460933	21	2.4	22	84	12	65	35	3	9	50	1.53
41468030--41468090	25	2.4	25	91	0	95	27	21	21	29	1.98
41470958--41471111	35	4.3	36	82	4	152	40	31	12	15	1.84
41478843--41478967	62	2.0	63	95	1	225	45	12	19	22	1.84
41479153--41479197	6	7.5	6	92	0	54	0	46	0	53	1.00
41479154--41479188	3	11.7	3	87	0	52	0	40	0	60	0.97
41480309--41480341	14	2.4	14	100	0	66	45	15	9	30	1.77
41480316--41480350	14	2.5	14	90	0	52	42	17	8	31	1.79
41485511--41485554	18	2.5	17	82	7	52	61	0	0	38	0.96
41488618--41488680	18	3.5	18	70	8	65	49	1	38	11	1.48
41490625--41490670	23	2.0	24	83	12	60	47	4	23	23	1.69
41492857--41492908	23	2.3	23	93	0	86	50	11	0	38	1.39
41498426--41498467	22	2.0	20	86	13	57	54	7	4	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41502917--41502958	21	2.0	21	86	9	59	9	7	2	80	0.97
41503529--41504035	87	5.8	87	88	3	734	23	22	22	30	1.99
41503790--41504010	44	5.1	44	63	16	118	22	23	23	30	1.99
41517882--41517911	15	1.9	16	93	6	53	40	6	6	46	1.56
41518414--41518497	29	2.8	29	77	10	89	57	3	2	36	1.29
41518414--41518478	31	2.1	30	86	8	87	55	4	3	36	1.36
41518516--41518702	86	2.2	87	85	3	245	39	21	9	30	1.84
41524715--41524805	49	2.0	42	89	10	119	30	8	30	29	1.87
41524461--41524825	47	7.7	47	97	1	651	30	8	30	30	1.87
41524943--41525021	37	2.1	37	88	0	113	24	17	31	26	1.97
41533983--41534116	41	3.3	41	87	2	171	31	26	17	24	1.97
41534734--41534825	46	2.0	46	100	0	184	43	21	8	26	1.81
41539929--41540142	25	8.6	24	71	12	121	16	25	20	37	1.93
41539952--41540154	50	4.1	51	82	8	222	16	25	20	37	1.93
41545012--41545056	24	1.9	24	86	4	65	42	4	44	8	1.56
41545235--41545331	48	2.0	48	100	0	194	36	18	14	30	1.91
41547832--41547869	20	1.9	20	88	0	58	44	7	7	39	1.63
41557499--41557564	29	2.2	30	86	2	89	34	10	12	42	1.77
41557701--41557786	31	2.9	30	78	3	93	34	15	13	36	1.87
41559345--41559405	7	8.6	7	72	16	54	39	1	0	59	1.08
41559501--41559537	17	2.1	18	90	5	58	32	43	0	24	1.55
41560796--41560849	28	1.9	28	85	7	74	61	3	7	27	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41565499--41565523	9	2.8	9	100	0	50	36	36	20	8	1.82
41570150--41570711	50	11.2	50	72	3	378	23	19	23	33	1.97
41570150--41570735	100	5.9	100	87	1	807	24	19	23	32	1.98
41570244--41570730	50	9.7	50	74	2	404	23	20	24	32	1.98
41572226--41572274	15	3.5	13	86	8	62	14	16	0	69	1.19
41572226--41572282	7	8.0	7	81	18	73	14	15	0	70	1.18
41572235--41572283	8	6.6	8	86	9	61	12	14	0	73	1.10
41578884--41578938	15	3.5	15	73	22	58	23	10	7	58	1.57
41579122--41579322	100	2.0	100	99	0	393	41	16	12	28	1.85
41582660--41582703	19	2.3	19	84	7	54	22	25	11	40	1.87
41590759--41590862	44	2.4	44	81	3	120	30	17	23	28	1.97
41590939--41591265	44	7.3	43	74	12	178	30	18	22	28	1.97
41591113--41591265	44	3.5	44	82	0	189	29	20	22	26	1.99
41591113--41591275	88	1.9	88	82	0	209	30	19	22	26	1.98
41592503--41592561	30	1.9	31	83	10	77	18	10	6	64	1.46
41592887--41592932	9	4.9	9	79	10	56	10	4	2	82	0.89
41592890--41592927	20	1.9	20	88	0	58	10	5	2	81	0.94
41594428--41594603	31	5.7	31	78	6	187	45	14	5	34	1.68
41594436--41594686	92	2.7	92	92	3	409	45	14	6	33	1.72
41595519--41595543	11	2.3	11	100	0	50	64	0	0	36	0.94
41601177--41601329	46	3.3	45	76	8	137	36	11	22	28	1.90
41603612--41603660	5	9.8	5	100	0	98	40	18	0	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41611122--41611173	26	1.9	26	84	7	68	48	5	15	30	1.68
41618292--41618350	24	2.5	24	82	0	73	61	18	0	20	1.35
41623990--41624129	37	3.8	37	76	3	147	18	12	32	37	1.88
41623964--41624126	74	2.2	74	91	0	254	16	11	32	39	1.85
41625268--41625309	21	2.0	20	86	4	57	23	21	23	30	1.99
41627234--41627449	37	5.8	37	92	0	351	25	31	17	25	1.97
41627659--41627900	47	5.1	47	86	4	331	25	30	11	32	1.92
41627659--41627900	98	2.5	96	89	2	353	25	30	11	32	1.92
41637794--41638267	47	10.1	47	95	0	804	32	9	29	28	1.88
41638386--41638464	37	2.1	37	88	4	115	25	18	30	25	1.98
41640200--41640265	33	2.0	33	100	0	132	30	15	15	39	1.88
41641681--41642288	186	3.3	186	89	2	924	23	25	8	42	1.82
41642603--41642631	14	2.0	15	93	6	51	55	0	44	0	0.99
41646241--41646406	40	4.2	40	88	0	226	25	19	28	26	1.99
41648950--41649082	61	2.2	58	84	6	169	44	2	3	50	1.29
41649193--41649225	13	2.4	14	85	5	50	57	3	3	36	1.29
41651692--41651840	51	2.9	50	78	10	147	36	12	20	30	1.90
41651967--41652303	60	5.6	59	81	2	334	32	13	25	28	1.94
41651967--41652303	120	2.8	120	83	0	395	32	13	25	28	1.94
41651971--41652303	180	1.9	180	82	3	420	33	13	25	27	1.94
41654038--41654356	148	2.2	148	83	2	381	31	14	28	25	1.95
41657831--41657864	17	2.0	17	100	0	68	41	23	0	35	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41657832--41657874	17	2.5	17	88	3	59	37	27	0	34	1.57
41658636--41658675	3	13.3	3	100	0	80	32	0	0	67	0.91
41660670--41660705	18	1.9	19	88	5	56	25	2	38	33	1.70
41670754--41670790	17	2.3	17	86	9	51	67	8	0	24	1.17
41681374--41681828	47	9.6	47	93	0	703	32	8	30	29	1.87
41694764--41694806	18	2.4	18	84	7	61	23	4	9	62	1.44
41696142--41696320	85	2.1	85	98	0	349	37	8	27	26	1.85
41697590--41698222	47	13.6	47	90	6	871	33	8	29	29	1.87
41697924--41697981	16	3.4	16	75	25	64	34	1	29	34	1.68
41697916--41697987	36	2.0	36	100	0	144	33	2	30	33	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207