genome.fa.s19.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  104  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31254625--31254678	4	13.5	4	96	0	90	46	24	3	25	1.69
31261577--31261606	15	2.0	15	93	0	51	30	16	13	40	1.87
31268158--31268213	29	1.9	29	88	0	85	39	12	16	32	1.85
31270138--31270205	34	2.0	34	94	0	118	29	26	11	32	1.92
31274009--31274058	14	3.5	15	86	8	77	32	6	20	42	1.76
31274151--31274269	38	3.2	38	65	17	95	31	4	5	58	1.39
31275509--31275577	35	1.9	36	97	2	131	52	18	2	26	1.60
31277354--31277420	33	2.0	33	91	0	107	40	2	43	13	1.59
31284686--31284730	12	3.6	12	82	11	54	53	11	2	33	1.49
31284752--31284782	13	2.4	13	94	0	53	54	12	0	32	1.38
31285873--31285973	27	3.7	26	83	7	121	37	13	23	24	1.92
31288831--31289121	50	5.9	50	83	2	291	23	27	21	27	1.99
31290840--31291063	40	5.6	40	90	1	308	25	20	28	26	1.99
31290840--31291098	80	3.3	80	84	3	238	25	20	28	25	1.99
31298630--31298892	40	6.6	40	87	3	316	24	20	28	26	1.99
31298669--31298927	80	3.3	80	84	3	238	25	20	28	25	1.99
31304134--31304183	24	2.1	24	100	0	100	26	30	4	40	1.74
31307053--31307123	29	2.4	29	80	0	70	36	28	16	18	1.93
31311325--31311506	91	2.0	91	95	0	328	31	20	3	43	1.70
31325103--31325200	28	3.6	26	86	9	133	31	12	26	29	1.92
31326187--31326521	47	7.1	47	88	2	397	25	12	18	43	1.85
31327333--31327372	15	2.7	14	88	11	62	60	2	37	0	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31338019--31338206	50	3.6	50	83	4	214	23	29	20	26	1.99
31341278--31341335	25	2.3	25	76	5	64	24	13	27	34	1.93
31360103--31360197	25	3.8	25	78	0	100	28	22	20	29	1.98
31364635--31364725	45	2.0	45	86	0	128	34	23	15	27	1.94
31364731--31364917	51	3.7	51	78	3	207	32	28	15	23	1.95
31364729--31364913	101	1.8	101	88	3	282	32	28	15	23	1.95
31374493--31374849	27	13.3	27	84	3	344	44	17	18	18	1.87
31374513--31374860	81	4.3	81	83	4	382	43	17	18	20	1.88
31375028--31375095	27	2.6	26	83	4	82	17	23	22	36	1.94
31375218--31375287	30	2.4	30	88	4	99	24	22	24	28	1.99
31377979--31378068	42	2.1	42	82	8	103	26	23	27	22	1.99
31385006--31385036	16	2.0	15	93	6	53	32	0	29	38	1.57
31388492--31388716	40	5.7	40	81	6	224	24	28	21	25	1.99
31388459--31388716	40	6.5	38	78	9	200	24	27	21	26	1.99
31388648--31388725	40	1.9	41	82	10	97	26	28	20	24	1.99
31396007--31396231	40	5.7	40	82	6	233	25	28	21	25	1.99
31396163--31396240	40	1.9	41	82	10	97	26	28	20	24	1.99
31402787--31402970	40	4.6	40	82	6	196	23	20	27	28	1.99
31402787--31402967	80	2.3	81	83	9	221	23	20	27	27	1.99
31416530--31416658	40	3.2	40	84	1	125	31	17	20	29	1.96
31416563--31416680	39	3.0	39	84	2	137	31	20	19	28	1.97
31416588--31417122	155	3.5	151	78	7	493	31	16	21	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31416731--31417193	146	3.1	145	74	12	433	32	14	21	31	1.94
31417320--31417384	29	2.3	28	83	2	76	18	0	26	55	1.43
31417359--31417398	21	1.9	21	84	0	53	20	0	25	55	1.44
31417541--31417734	7	27.4	7	69	8	61	19	2	32	45	1.62
31417551--31417696	28	5.2	28	71	14	95	19	1	32	47	1.58
31417617--31417658	20	2.1	20	82	8	50	14	0	35	50	1.43
31418126--31418181	18	3.1	18	89	0	85	5	42	17	33	1.72
31418503--31418533	14	2.2	14	100	0	62	54	0	12	32	1.38
31419914--31420160	9	26.0	9	71	14	131	44	17	2	35	1.62
31420030--31420160	57	2.3	57	90	4	201	42	19	1	35	1.61
31425866--31425950	42	2.0	42	83	0	107	31	12	24	30	1.93
31425881--31426041	43	3.8	43	82	2	182	29	14	24	31	1.95
31425872--31426050	86	2.1	85	82	6	218	28	15	26	29	1.96
31426082--31426111	15	2.0	15	100	0	60	20	20	26	33	1.97
31428852--31428909	11	5.3	11	74	0	53	37	44	3	13	1.61
31428852--31428914	22	2.9	22	82	0	81	38	41	3	17	1.65
31435189--31435224	18	2.0	18	100	0	72	38	27	0	33	1.57
31437331--31437384	28	1.9	28	92	0	90	29	25	27	16	1.97
31437502--31437552	26	2.0	26	88	0	75	33	17	27	21	1.96
31437627--31437807	32	5.7	32	71	0	137	37	22	21	18	1.94
31437629--31437804	64	2.7	64	82	3	194	38	22	20	18	1.94
31437791--31437845	26	2.3	23	74	17	56	36	29	20	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31437976--31438048	24	3.1	23	82	5	83	46	26	8	19	1.77
31438079--31438456	54	7.1	55	79	7	361	23	20	19	36	1.95
31438079--31438456	81	4.7	82	79	7	377	23	20	19	36	1.95
31438093--31438413	27	11.9	27	85	4	346	24	19	18	37	1.94
31438078--31438438	27	13.5	27	83	5	301	23	20	18	36	1.95
31439791--31439842	20	2.5	21	90	9	81	40	9	11	38	1.74
31451773--31451880	39	2.7	39	81	4	119	37	20	20	22	1.95
31451934--31452115	41	4.4	41	78	6	179	21	19	24	35	1.96
31451945--31452106	85	1.9	84	89	3	254	22	19	24	33	1.97
31453313--31453423	9	12.4	9	88	4	163	24	10	24	40	1.87
31453453--31453479	9	3.0	9	100	0	54	22	11	22	44	1.84
31455632--31455678	19	2.5	19	80	16	53	70	10	0	19	1.16
31455647--31455685	19	2.0	20	85	5	53	69	10	0	20	1.17
31457481--31457512	5	6.4	5	100	0	64	18	0	0	81	0.70
31458026--31458116	43	2.1	43	88	6	132	35	10	8	45	1.71
31458485--31458668	43	4.3	43	88	1	253	25	18	28	27	1.98
31458791--31458824	16	2.1	16	100	0	68	29	5	5	58	1.45
31465038--31465136	43	2.3	44	87	1	137	28	26	19	26	1.99
31467846--31467879	17	1.9	18	94	5	61	50	5	17	26	1.69
31478571--31478610	14	2.7	15	88	3	55	50	2	30	17	1.59
31478720--31478930	115	1.8	116	86	5	311	35	18	15	31	1.91
31478928--31479005	41	1.9	41	97	0	147	25	24	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31495084--31495111	4	7.0	4	100	0	56	25	0	0	75	0.81
31500940--31500977	6	6.3	6	87	0	58	31	2	2	63	1.22
31501087--31501117	3	10.3	3	92	0	53	32	3	0	64	1.09
31506505--31506566	28	2.2	28	82	2	70	32	1	0	66	1.02
31508116--31508160	18	2.5	18	96	0	81	62	11	8	17	1.53
31508492--31508628	50	2.7	50	81	2	168	35	24	13	26	1.93
31513113--31513390	25	11.2	25	72	9	144	33	17	24	24	1.96
31513104--31513390	50	5.8	50	77	10	257	33	17	25	24	1.96
31513114--31513383	75	3.6	74	74	12	241	33	17	24	24	1.96
31513832--31514037	65	3.2	65	64	15	172	33	19	8	38	1.82
31513839--31514102	130	2.0	130	98	0	510	33	18	7	39	1.80
31513895--31514102	65	3.2	64	63	18	158	34	17	6	41	1.76
31519326--31519377	13	3.7	13	76	18	59	7	34	32	25	1.84
31519319--31519384	30	2.2	30	100	0	132	12	37	28	21	1.89
31520621--31520725	50	2.1	50	89	3	158	33	21	23	20	1.97
31520621--31520726	25	4.2	24	77	13	99	33	21	23	21	1.98
31530077--31530160	33	2.5	33	86	0	114	52	15	16	15	1.75
31537620--31537668	24	2.0	24	96	0	89	32	18	12	36	1.88
31541702--31541740	9	4.2	9	87	6	51	15	46	0	38	1.46
31541703--31541739	19	1.9	19	88	0	56	16	45	0	37	1.47
31545235--31545264	15	2.0	15	93	0	51	40	16	0	43	1.48
31545367--31545399	13	2.5	13	95	0	57	33	21	3	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31558294--31558327	3	11.3	3	100	0	68	64	0	0	35	0.94
31559955--31560109	50	3.1	50	67	3	123	25	20	21	32	1.97
31560427--31560862	132	3.3	131	86	2	565	29	24	18	27	1.98
31560427--31560914	132	3.7	129	81	6	473	28	25	19	27	1.98
31560518--31560903	129	3.0	129	83	3	400	29	25	19	26	1.99
31560878--31561037	86	1.8	88	88	5	245	24	24	26	25	2.00
31570517--31570633	52	2.2	52	96	0	216	21	28	24	25	1.99
31571379--31571614	40	5.9	40	77	5	217	36	19	25	18	1.94
31575033--31575066	17	2.0	17	88	0	50	58	5	11	23	1.55
31589571--31589628	25	2.3	24	85	8	73	34	6	32	25	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207