genome.fa.s19.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  32  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9235016--9235258	131	1.9	131	91	0	396	23	22	22	31	1.98
9235016--9235330	131	2.4	130	83	5	323	24	22	20	32	1.98
9235275--9235974	44	15.8	43	70	9	390	26	24	20	29	1.99
9235416--9235932	90	5.8	89	70	12	328	26	23	20	29	1.99
9235319--9235839	134	3.9	134	96	0	943	27	24	19	28	1.99
9237225--9237260	6	5.7	6	87	12	54	13	13	0	72	1.13
9237223--9237261	7	5.9	7	88	11	64	15	12	0	71	1.14
9237223--9237260	13	2.9	13	100	0	76	15	13	0	71	1.16
9238206--9238262	23	2.5	23	76	21	57	7	5	8	78	1.07
9238246--9238304	31	1.9	31	89	6	93	10	11	8	69	1.37
9242202--9242241	21	1.9	21	85	10	55	57	0	10	32	1.32
9242627--9242659	14	2.3	15	89	5	50	84	6	3	6	0.84
9242638--9242671	17	2.0	17	88	0	50	82	0	8	8	0.85
9244210--9244504	44	6.8	44	76	5	204	24	22	22	30	1.99
9244169--9244503	131	2.6	130	92	0	526	24	22	22	30	1.99
9244166--9244498	87	3.8	86	75	7	287	24	22	22	30	1.99
9244656--9245038	90	4.3	90	71	11	309	26	22	20	29	1.99
9244522--9245079	134	4.2	134	94	0	956	27	24	19	28	1.98
9244514--9245216	44	15.9	41	70	13	334	26	24	19	29	1.99
9246465--9246500	6	5.7	6	87	12	54	13	13	0	72	1.13
9246463--9246501	7	5.9	7	88	11	64	15	12	0	71	1.14
9246463--9246500	13	2.9	13	100	0	76	15	13	0	71	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9247493--9247553	31	1.9	33	90	6	99	9	11	8	70	1.34
9254526--9254558	14	2.3	15	89	5	50	84	6	0	9	0.76
9259983--9260016	17	1.9	17	88	5	50	20	14	8	55	1.65
9272277--9272335	27	2.2	27	81	0	73	33	20	37	8	1.83
9272679--9272717	14	2.5	17	76	23	50	71	0	12	15	1.14
9274926--9274982	30	1.9	30	96	0	105	12	24	36	26	1.91
9278160--9278184	8	3.1	8	100	0	50	76	0	12	12	1.04
9278348--9278392	20	2.2	20	81	11	56	44	0	53	2	1.13
9279092--9279177	30	2.9	31	75	6	88	18	29	30	22	1.97
9283227--9283334	53	2.0	53	89	7	166	46	10	12	30	1.75
9284174--9284461	148	1.9	148	87	1	416	27	22	20	29	1.99
9288662--9288705	21	2.1	21	87	8	63	38	4	4	52	1.42
9294037--9294090	27	2.0	27	96	0	99	33	7	16	42	1.76
9300520--9300577	14	4.1	13	80	14	62	6	10	0	82	0.83
9300520--9300566	10	4.8	10	78	5	51	6	8	0	85	0.75
9305883--9305924	20	2.0	21	90	4	68	57	11	0	30	1.35
9305883--9305924	22	1.9	22	85	9	59	57	11	0	30	1.35
9306316--9306347	16	2.0	16	100	0	64	37	12	12	37	1.81
9306464--9306553	29	3.0	29	78	14	85	30	10	15	44	1.79
9306688--9306756	31	2.3	30	82	9	86	43	15	7	33	1.75
9317929--9317966	18	2.1	18	85	9	51	65	5	0	28	1.14
9321362--9321424	18	3.6	18	81	10	69	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9322175--9322209	11	3.5	10	88	11	54	71	0	0	28	0.86
9328532--9328570	17	2.3	17	90	0	60	12	7	5	74	1.20
9333134--9333173	21	1.9	21	90	10	64	60	7	12	20	1.56
9333865--9333915	22	2.3	22	100	0	102	27	33	0	39	1.57
9333887--9333998	51	2.2	51	96	0	206	28	29	0	41	1.56
9334003--9334041	11	3.6	11	79	6	53	46	0	0	53	1.00
9334001--9334049	21	2.3	21	100	0	98	38	0	0	61	0.96
9335126--9335157	7	4.6	7	100	0	64	28	0	12	59	1.34
9335808--9335842	18	1.9	18	88	0	52	25	34	8	31	1.86
9336245--9336314	25	2.8	25	86	2	104	45	2	11	40	1.55
9336310--9336451	18	8.7	18	69	21	116	48	23	0	28	1.51
9336381--9336572	29	6.8	29	73	20	158	43	26	0	29	1.55
9336317--9336716	47	8.6	47	83	12	520	45	26	0	28	1.54
9336549--9336685	18	8.5	17	67	21	73	46	26	0	27	1.53
9336428--9336572	29	4.8	29	84	11	182	42	26	0	30	1.56
9336598--9336685	18	5.3	18	75	18	93	46	26	0	27	1.53
9336662--9336753	29	3.2	29	90	0	148	43	28	1	27	1.62
9336317--9336756	234	1.9	234	93	1	767	44	26	0	29	1.56
9336317--9336716	93	4.3	93	80	13	419	45	26	0	28	1.54
9336751--9336874	55	2.3	55	95	2	223	40	11	5	42	1.64
9339417--9339641	123	1.8	123	94	1	398	32	21	16	29	1.95
9339776--9339842	29	2.3	29	84	2	82	44	17	13	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9341391--9341415	3	8.3	3	100	0	50	36	0	0	64	0.94
9342791--9342850	31	2.0	31	83	9	79	46	13	3	36	1.60
9344716--9344753	13	3.0	13	88	3	51	36	0	0	63	0.95
9358408--9358465	25	2.3	25	93	0	98	41	0	13	44	1.44
9358353--9358440	45	2.0	45	88	0	131	38	0	10	51	1.36
9361271--9361431	41	3.9	41	94	0	286	20	27	21	30	1.98
9363501--9363635	39	3.5	39	75	3	119	39	18	20	22	1.93
9363802--9363846	21	2.1	22	87	4	65	26	48	2	22	1.62
9366343--9366376	18	1.9	18	94	5	61	38	5	0	55	1.24
9367766--9367970	43	4.8	43	80	9	163	21	20	31	26	1.98
9367766--9367970	86	2.4	86	83	4	236	21	20	31	26	1.98
9368039--9368093	21	2.5	22	94	2	94	45	25	16	12	1.83
9375236--9375365	40	3.3	39	74	6	118	36	22	24	16	1.95
9375464--9375718	41	6.2	41	76	8	189	15	25	23	35	1.94
9375464--9375718	82	3.1	82	87	2	352	15	25	23	35	1.94
9376191--9376229	15	2.6	15	79	0	51	25	0	38	35	1.56
9378102--9378153	27	1.9	27	84	0	68	42	0	9	48	1.36
9379031--9379057	11	2.5	11	100	0	54	25	18	0	55	1.43
9380990--9381042	21	2.5	21	84	9	72	39	1	1	56	1.21
9381090--9381528	16	25.9	16	67	20	152	45	17	2	33	1.62
9381106--9381585	9	55.3	9	69	17	259	45	18	2	33	1.63
9381127--9381167	13	2.8	15	85	14	59	46	19	0	34	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9381219--9381363	25	6.0	24	72	18	92	49	20	0	29	1.54
9381244--9381349	43	2.5	41	83	8	131	50	19	0	30	1.48
9381319--9381526	59	3.6	59	92	2	343	45	17	3	33	1.67
9381494--9381558	25	2.6	25	85	4	78	43	20	4	32	1.72
9381285--9381558	118	2.4	114	80	9	349	44	18	3	32	1.68
9381285--9381534	59	4.3	60	86	7	311	44	19	3	32	1.68
9386833--9386883	21	2.4	21	86	0	66	37	17	41	3	1.68
9387277--9387789	43	11.9	43	85	2	645	23	21	24	30	1.99
9397489--9397599	27	4.1	26	77	17	109	63	1	2	32	1.19
9397590--9397636	21	2.1	23	88	7	71	55	6	0	38	1.26
9397450--9397711	9	27.6	9	68	17	90	60	3	3	32	1.30
9398823--9398870	24	2.0	24	84	8	62	41	4	6	47	1.48
9398958--9399002	20	2.4	19	85	7	56	31	0	2	66	1.04
9398970--9399007	20	1.9	20	94	0	67	28	0	5	65	1.14
9407097--9407201	54	1.9	54	82	0	129	19	30	20	29	1.97
9411041--9411106	11	6.4	11	75	21	54	60	0	3	36	1.12
9411051--9411135	16	4.8	16	69	19	53	64	0	1	34	1.01
9411032--9411123	39	2.3	40	87	5	143	65	0	2	32	1.05
9412881--9412934	26	2.0	27	92	3	92	38	3	5	51	1.43
9415126--9415176	3	17.7	3	88	8	79	35	0	0	64	0.94
9414930--9415121	98	2.0	98	95	4	356	38	12	19	29	1.89
9416860--9416895	17	2.1	17	89	5	54	19	2	11	66	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9423969--9424017	25	2.0	25	91	0	80	34	22	26	16	1.95
9423970--9424027	25	2.3	25	84	0	71	37	17	27	17	1.92
9431424--9431482	25	2.4	25	88	0	82	35	20	27	16	1.94
9439089--9439133	22	2.0	24	91	8	76	24	22	0	53	1.46
9439459--9439489	6	5.2	6	92	0	53	0	19	0	80	0.71
9439541--9439577	19	1.9	19	100	0	74	10	16	2	70	1.27
9442465--9442509	23	1.9	24	95	4	83	15	28	0	55	1.41
9447573--9447618	16	2.9	16	87	6	58	0	13	8	78	0.97
9449537--9449566	16	1.9	16	93	6	53	30	0	20	50	1.49
9457003--9457162	79	2.0	79	87	0	230	44	14	6	35	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207