genome.fa.s19.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  40  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11571794--11571835	22	1.9	22	85	9	59	35	4	11	47	1.61
11573663--11573700	17	2.2	17	100	0	76	21	26	13	39	1.89
11574215--11574302	35	2.5	35	78	7	97	26	27	22	23	2.00
11577951--11578073	42	2.9	42	86	2	174	31	21	14	31	1.94
11578033--11578216	48	3.8	48	83	2	226	32	21	15	30	1.94
11586528--11586556	9	3.2	9	100	0	58	68	0	0	31	0.89
11587045--11587081	9	4.1	9	85	0	56	29	8	13	48	1.71
11597435--11597459	13	1.9	13	100	0	50	32	4	24	40	1.73
11598533--11598675	42	3.3	42	76	8	128	29	18	21	30	1.97
11603143--11603189	19	2.5	19	100	0	94	40	4	19	36	1.71
11603874--11604002	24	5.2	25	69	16	81	19	25	20	34	1.96
11607493--11607751	58	4.5	58	87	1	367	33	10	20	34	1.88
11607835--11608123	69	4.2	68	80	3	301	19	19	26	34	1.96
11607834--11608123	137	2.1	137	81	2	341	19	19	26	34	1.96
11617586--11617695	54	2.0	54	96	0	202	38	18	18	25	1.93
11622489--11622625	39	3.5	39	81	4	150	21	23	14	40	1.90
11622487--11622657	39	4.4	39	80	2	146	22	21	14	41	1.89
11622487--11622657	78	2.2	78	77	2	182	22	21	14	41	1.89
11622643--11622984	133	2.6	133	82	3	418	31	17	13	37	1.88
11624275--11624651	190	2.0	190	94	1	657	31	18	13	36	1.89
11632128--11632170	23	1.9	23	85	4	61	41	20	4	32	1.73
11633345--11633377	17	1.9	17	93	0	57	72	12	6	9	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11635706--11635758	22	2.3	22	75	15	54	47	1	11	39	1.50
11637444--11637660	44	4.8	45	78	6	190	26	20	19	32	1.97
11637915--11638574	89	7.4	88	83	3	445	27	23	21	28	1.99
11638368--11638503	45	3.0	45	65	6	123	31	22	16	29	1.96
11638240--11638591	177	2.0	177	90	0	551	29	23	18	28	1.98
11638248--11638617	88	4.2	88	86	0	488	29	22	19	28	1.98
11638638--11638745	43	2.5	44	78	4	110	29	25	16	28	1.97
11640043--11640080	16	2.5	15	84	16	51	2	18	0	78	0.86
11643077--11643161	9	9.4	9	92	0	125	43	24	8	23	1.81
11644282--11644310	2	15.0	2	92	7	51	48	0	0	51	1.00
11644394--11644446	22	2.3	22	75	15	54	47	1	11	39	1.50
11653511--11653535	6	4.2	6	100	0	50	16	0	0	84	0.63
11655841--11655887	24	2.0	24	100	0	94	34	19	17	29	1.94
11662264--11662315	24	2.2	24	82	0	59	32	5	9	51	1.58
11664228--11664279	24	2.2	24	85	0	68	36	3	13	46	1.62
11664236--11664287	24	2.2	24	85	0	68	32	3	9	53	1.51
11673470--11673507	19	2.0	19	85	10	51	60	2	5	31	1.33
11679842--11679922	42	1.9	42	82	5	101	37	11	0	51	1.37
11680042--11680078	20	1.9	19	89	10	58	18	5	5	70	1.27
11680821--11680962	71	2.0	71	94	0	248	28	16	19	35	1.93
11683850--11683902	16	3.3	15	77	12	61	84	9	0	5	0.76
11684336--11684368	17	1.9	17	93	0	57	81	3	15	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11685302--11686082	50	15.6	50	72	2	553	32	23	19	24	1.98
11685240--11686082	100	8.4	100	89	0	1220	32	23	20	24	1.98
11686079--11686237	83	1.9	83	90	2	257	28	19	24	27	1.99
11688158--11688182	3	8.3	3	100	0	50	32	0	0	68	0.90
11688791--11688932	71	2.0	71	93	2	241	29	16	17	35	1.93
11708574--11708606	13	2.5	13	90	0	57	33	0	27	39	1.57
11714473--11714529	3	19.0	3	90	0	60	1	22	33	42	1.64
11714469--11714519	18	2.8	18	84	0	75	3	17	33	45	1.67
11714470--11714528	15	3.9	15	88	0	82	1	20	33	44	1.62
11715263--11715300	12	3.2	12	88	0	58	0	21	36	42	1.53
11715254--11715297	15	3.1	15	81	15	58	0	18	36	45	1.49
11718863--11718937	28	2.6	26	76	16	69	45	0	0	54	0.99
11719895--11719945	18	2.9	18	68	8	52	50	3	3	41	1.39
11722005--11722035	16	1.9	16	93	0	53	45	0	29	25	1.54
11722121--11722180	30	2.0	31	86	3	86	43	0	36	20	1.52
11722316--11722356	21	2.0	21	85	9	57	46	0	31	21	1.52
11722394--11722430	9	4.1	9	89	0	56	29	8	13	48	1.71
11725291--11725346	20	2.8	20	79	12	62	37	3	3	55	1.35
11730073--11730098	5	5.2	5	100	0	52	80	0	0	19	0.71
11732772--11732818	19	2.6	18	82	3	58	21	4	6	68	1.30
11733357--11733387	5	6.0	5	96	3	53	22	0	0	77	0.77
11734238--11734285	24	2.0	25	83	4	62	35	4	2	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11736238--11736263	11	2.4	11	100	0	52	15	15	0	69	1.20
11737231--11737273	17	2.5	17	96	3	77	53	4	4	37	1.43
11740155--11740259	43	2.5	43	87	3	142	20	17	31	31	1.95
11742128--11742167	16	2.5	16	91	0	62	40	7	25	27	1.82
11745360--11745400	15	2.7	15	96	0	73	53	4	24	17	1.63
11749001--11749031	9	3.4	9	90	0	53	25	12	22	38	1.90
11749151--11749211	30	2.0	31	83	3	79	21	44	0	34	1.53
11749469--11749508	20	1.9	21	85	10	55	22	22	0	55	1.44
11751256--11751387	69	1.9	67	87	6	194	41	10	12	35	1.77
11765310--11765340	10	3.2	10	90	9	55	64	0	0	35	0.94
11765452--11765504	21	2.5	21	93	0	88	30	37	9	22	1.86
11766176--11766209	14	2.3	15	90	5	52	32	5	17	44	1.73
11766678--11766719	22	2.0	22	90	4	68	35	4	14	45	1.66
11768195--11768235	21	2.0	21	90	0	64	41	19	12	26	1.87
11769642--11769711	22	3.2	22	80	8	88	31	27	0	41	1.56
11769661--11769763	52	2.0	50	83	9	127	33	32	0	34	1.58
11769713--11769754	22	1.9	22	90	0	66	33	33	0	33	1.58
11769796--11769851	28	2.0	29	89	3	87	35	0	1	62	1.06
11769796--11769859	28	2.2	29	86	2	85	35	0	1	62	1.05
11773514--11773755	125	1.9	124	89	4	371	31	24	14	29	1.94
11773514--11773794	125	2.3	124	84	5	370	32	23	14	28	1.94
11775649--11775688	15	2.7	15	100	0	80	42	50	0	7	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11789146--11789260	46	2.5	46	83	5	137	33	21	19	26	1.97
11789272--11789472	41	4.8	41	70	8	134	28	22	22	26	1.99
11789189--11789583	129	3.1	127	86	4	496	30	21	21	27	1.98
11789359--11789586	44	5.3	41	72	9	152	30	19	21	28	1.98
11789766--11789820	15	3.7	15	90	9	94	43	47	0	9	1.35
11792243--11792284	21	2.0	22	85	4	59	40	9	16	33	1.81
11803998--11804036	20	2.0	20	84	0	51	0	10	35	53	1.35
11804444--11804535	22	4.1	22	72	13	80	18	14	6	60	1.54
11824928--11825075	57	2.5	59	85	9	194	29	21	26	22	1.99
11825954--11826000	23	2.0	23	100	0	94	44	12	21	21	1.85
11833544--11833593	9	5.4	9	77	13	57	22	10	26	42	1.84
11836220--11836418	86	2.3	85	81	7	224	23	18	28	29	1.98
11836216--11836418	44	4.7	44	83	7	238	23	18	28	29	1.98
11839383--11839450	26	2.6	26	81	6	75	50	14	1	33	1.53
11841382--11841431	4	12.8	4	79	10	50	76	4	2	18	1.04
11841382--11841423	18	2.4	18	88	4	59	78	2	2	16	0.96
11841867--11842059	96	2.0	96	98	0	377	47	11	19	22	1.81
11859499--11859534	13	2.8	12	88	12	54	11	0	2	86	0.68
11859706--11859739	15	2.4	14	86	13	52	38	5	0	55	1.24
11863251--11863308	28	2.1	28	80	6	64	25	6	0	67	1.16
11863261--11863316	28	2.0	29	89	3	87	25	7	0	67	1.15
11866595--11866641	24	2.0	24	83	8	60	61	4	0	34	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11867575--11867679	31	3.4	31	70	12	90	49	5	4	40	1.48
11867568--11867683	61	1.9	61	89	0	178	47	6	4	42	1.48
11868931--11868959	3	9.7	3	100	0	58	34	0	31	34	1.58
11869363--11869406	23	1.9	23	85	0	61	29	2	6	61	1.34
11877139--11877182	20	2.1	22	84	16	58	68	9	9	13	1.40
11879990--11880096	32	3.2	32	82	7	151	39	15	25	19	1.91
11880103--11880239	35	4.0	35	86	6	174	40	17	22	18	1.91
11893257--11893321	19	3.6	18	73	8	60	66	0	0	33	0.92
11895188--11895272	41	2.1	41	95	0	152	36	23	20	20	1.95
11898149--11898203	24	2.3	24	84	6	67	30	20	30	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207