genome.fa.s19.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  160  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49311419--49311466	22	2.2	22	96	0	87	20	16	20	41	1.90
49314080--49314136	28	2.0	28	100	0	114	29	21	14	35	1.92
49317454--49317515	29	2.1	29	96	0	115	40	12	0	46	1.42
49319046--49319217	68	2.5	68	85	5	215	25	20	16	36	1.94
49321190--49321335	76	1.9	76	97	0	274	30	17	25	26	1.98
49322438--49322472	17	2.0	17	88	5	52	40	17	0	42	1.49
49322717--49322845	41	3.1	41	88	2	188	32	27	22	17	1.97
49322717--49322872	41	3.8	41	84	5	172	33	26	22	17	1.96
49325414--49325457	5	8.8	5	84	0	61	77	2	4	15	1.04
49326641--49326680	21	1.9	21	89	0	62	40	0	20	40	1.52
49336442--49336493	26	2.0	26	96	0	95	13	23	34	28	1.92
49336363--49336734	104	3.6	105	94	2	642	18	20	30	30	1.97
49338965--49338995	8	3.8	8	91	8	53	74	0	3	22	0.96
49340415--49340522	41	2.5	42	80	8	121	32	17	21	28	1.96
49340411--49340662	44	5.6	45	71	10	140	29	21	19	29	1.98
49340491--49340902	142	2.9	143	83	5	507	29	21	18	30	1.97
49340733--49341001	99	2.7	98	84	3	317	28	21	18	30	1.97
49340626--49341099	241	2.0	242	86	3	670	29	21	17	31	1.96
49340946--49341047	44	2.3	44	79	1	105	28	19	23	28	1.98
49340867--49341367	143	3.5	143	82	3	620	28	21	18	31	1.97
49342225--49342301	6	13.0	6	77	8	68	3	20	1	74	1.06
49342225--49342301	12	6.5	12	79	8	86	3	20	1	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49342227--49342300	35	2.1	35	85	5	96	4	20	1	74	1.06
49342247--49342301	23	2.3	24	90	3	85	5	20	0	74	1.01
49346354--49346500	40	3.7	40	83	8	174	24	22	27	25	2.00
49354264--49354448	40	4.7	40	87	6	243	24	22	27	25	2.00
49354264--49354448	79	2.3	82	84	7	247	24	22	27	25	2.00
49354317--49354481	79	2.1	79	85	6	219	26	20	27	26	1.99
49357724--49357767	23	1.9	23	86	9	63	70	9	4	15	1.30
49357874--49357908	13	2.6	14	82	17	56	68	0	5	25	1.11
49357966--49358002	14	2.5	15	84	16	51	75	0	2	21	0.92
49358773--49358814	16	2.5	17	80	3	50	9	4	9	76	1.15
49380549--49380596	24	2.0	24	100	0	96	37	4	4	54	1.39
49381006--49381043	18	2.1	19	85	14	53	0	21	0	78	0.74
49381005--49381045	13	3.2	13	90	10	66	0	24	0	75	0.80
49381071--49381124	18	3.0	18	78	10	65	29	5	0	64	1.16
49385953--49386006	10	5.6	10	72	14	51	68	0	3	27	1.06
49385953--49386006	20	2.8	20	86	5	76	68	0	3	27	1.06
49386222--49386246	12	2.1	12	100	0	50	32	16	8	44	1.76
49389477--49389508	10	3.2	10	95	0	55	21	9	21	46	1.79
49400272--49400320	25	1.9	25	87	4	71	65	2	4	28	1.22
49400407--49400448	18	2.3	18	84	8	50	30	0	9	59	1.29
49402198--49402246	20	2.3	21	83	13	57	46	0	2	51	1.12
49402982--49403028	17	2.8	16	79	17	51	57	4	2	36	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49417803--49417836	13	2.6	13	100	0	68	58	0	0	41	0.98
49431624--49431673	26	2.0	24	88	7	73	24	20	10	46	1.81
49432026--49432069	17	2.5	18	89	10	65	63	0	0	36	0.95
49432026--49432081	20	2.9	20	85	15	66	62	0	0	37	0.95
49435496--49435528	2	16.5	2	100	0	66	48	0	0	51	1.00
49453019--49453086	7	9.7	7	95	0	118	25	0	0	75	0.81
49453094--49453146	27	2.0	26	85	10	72	22	0	3	73	0.99
49462334--49462365	15	2.1	15	94	0	55	71	0	28	0	0.86
49464785--49464823	21	1.9	21	89	5	62	58	10	2	28	1.44
49466651--49466702	24	2.2	24	85	0	68	53	9	3	32	1.51
49467276--49467336	9	6.6	9	88	7	95	39	29	8	22	1.83
49467274--49467333	29	2.1	29	96	0	111	41	30	8	20	1.81
49471624--49471663	16	2.5	16	87	0	53	30	5	32	32	1.79
49473404--49473455	24	2.2	24	85	0	68	53	9	3	32	1.51
49482566--49482607	11	4.0	11	75	12	52	52	23	7	16	1.68
49482620--49482922	151	2.0	151	99	0	597	26	16	17	39	1.90
49486820--49486864	18	2.5	18	82	7	56	40	17	4	37	1.70
49500085--49500116	12	2.7	12	95	0	55	21	18	37	21	1.94
49509407--49509436	12	2.5	12	94	0	51	0	26	0	73	0.84
49507757--49509914	769	2.8	767	86	2	2841	22	14	20	42	1.88
49510838--49510871	12	2.9	12	91	4	52	5	17	0	76	0.98
49509921--49514942	768	6.6	768	83	4	6019	23	14	20	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49515334--49515367	12	2.9	12	91	4	52	0	23	0	76	0.79
49515091--49518814	735	4.9	765	81	7	4030	23	14	21	40	1.90
49519036--49519066	15	2.1	15	93	0	53	70	0	3	25	1.02
49527334--49527367	12	2.8	12	90	0	50	0	23	0	76	0.79
49525507--49527943	756	3.2	757	86	3	3356	24	14	21	40	1.90
49536532--49536686	43	3.7	41	77	13	163	23	18	28	29	1.98
49536532--49536686	84	1.8	84	84	10	210	23	18	28	29	1.98
49536847--49536878	16	1.9	17	93	6	57	40	0	21	37	1.54
49543413--49543463	21	2.4	21	80	0	57	35	9	25	29	1.88
49545160--49545233	38	1.9	38	97	0	139	32	1	20	45	1.59
49556288--49556320	17	1.9	17	100	0	66	45	6	0	48	1.27
49558103--49558153	18	2.8	18	93	0	84	27	25	15	31	1.96
49570449--49570478	6	5.0	6	100	0	60	50	0	16	33	1.46
49571035--49571104	32	2.2	32	89	0	104	41	21	11	25	1.86
49571085--49571198	19	5.9	19	72	3	75	46	21	3	28	1.68
49577284--49577528	89	2.7	89	88	4	325	24	6	12	56	1.58
49577564--49577613	19	2.5	20	75	21	50	56	0	6	38	1.24
49580685--49580843	79	2.0	78	85	3	212	42	17	13	27	1.86
49582795--49582832	17	2.2	17	90	0	58	26	13	0	60	1.33
49582974--49583011	12	3.2	12	88	3	60	31	10	5	52	1.58
49582974--49583028	6	9.5	6	78	11	53	32	14	5	47	1.67
49582974--49583028	23	2.4	23	84	6	58	32	14	5	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49585083--49585143	23	2.7	23	87	10	81	49	3	1	45	1.28
49585117--49585173	16	3.6	16	92	0	96	45	3	5	45	1.43
49585218--49585401	93	2.0	93	96	0	341	39	4	7	48	1.52
49585450--49585496	22	2.1	22	84	7	60	57	4	2	36	1.30
49586947--49587073	52	2.5	51	82	8	152	32	22	19	25	1.97
49586986--49587087	52	2.0	51	94	1	177	29	20	17	32	1.96
49588584--49588631	4	12.0	4	84	0	60	16	2	31	50	1.57
49588585--49588632	16	3.0	16	90	0	69	14	2	33	50	1.55
49588777--49588837	30	2.0	30	93	6	106	21	42	0	36	1.53
49592223--49592269	19	2.5	19	92	0	76	53	4	10	31	1.55
49593579--49593773	80	2.5	77	85	4	257	57	9	7	25	1.56
49594028--49594105	33	2.4	34	84	4	97	23	15	48	12	1.79
49595964--49596405	103	4.3	102	82	12	505	53	14	0	30	1.48
49595962--49596405	205	2.2	205	83	9	550	53	14	0	30	1.48
49596483--49596605	60	2.1	59	92	1	201	52	11	0	35	1.43
49596698--49596722	13	1.9	13	100	0	50	40	16	4	40	1.67
49596730--49596801	3	24.3	3	94	2	128	1	30	0	68	0.99
49597003--49597058	27	2.1	27	86	0	76	17	35	28	17	1.93
49598773--49598837	19	3.3	19	70	16	60	30	3	0	66	1.07
49598769--49598875	40	2.6	41	85	5	126	35	2	0	61	1.10
49606901--49606952	11	4.7	11	79	9	52	25	30	1	42	1.66
49606897--49606952	22	2.6	22	78	15	64	25	28	1	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49606914--49607011	51	1.9	51	87	4	144	27	25	2	44	1.65
49607919--49607962	21	2.1	21	88	12	65	45	0	4	50	1.22
49608640--49608706	29	2.3	31	79	10	77	29	40	17	11	1.86
49608790--49608832	18	2.4	18	84	7	52	18	23	9	48	1.76
49609076--49609116	21	1.9	21	85	5	55	29	43	21	4	1.73
49609381--49610144	21	35.9	21	84	4	1003	44	30	0	24	1.59
49609381--49610144	64	12.0	64	86	2	995	44	30	0	24	1.59
49609381--49610144	85	9.0	83	85	5	976	44	30	0	24	1.59
49614679--49614731	22	2.6	21	85	11	67	41	1	9	47	1.47
49614701--49614739	19	2.0	20	85	5	53	38	0	10	51	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207