genome.fa.s19.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  103  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30995572--30996738	600	1.9	599	92	0	1974	38	13	20	28	1.89
30997339--30997387	2	24.5	2	100	0	98	0	0	51	48	1.00
30999575--31000135	279	2.0	279	86	2	786	31	18	14	34	1.91
31001792--31001825	8	4.2	8	84	0	50	38	0	11	50	1.39
31002096--31002236	75	1.9	75	83	2	185	33	4	18	43	1.72
31002318--31002397	41	2.0	41	84	0	106	26	17	22	33	1.96
31005197--31005221	10	2.5	10	100	0	50	40	0	12	48	1.40
31005332--31005366	6	5.8	6	100	0	70	34	0	14	51	1.42
31005325--31005367	18	2.4	18	88	0	68	34	0	16	48	1.46
31005638--31005778	75	1.9	75	82	5	178	34	4	17	43	1.71
31005872--31005965	41	2.3	41	81	0	98	27	18	23	30	1.97
31006090--31006243	69	2.2	71	82	3	186	30	12	14	42	1.83
31010901--31010943	21	2.0	21	95	0	77	27	25	13	32	1.94
31012733--31012770	14	2.8	14	84	4	51	34	0	0	65	0.93
31013637--31013672	6	5.8	6	87	6	54	63	0	0	36	0.94
31014312--31014389	31	2.5	30	83	4	93	44	8	0	46	1.35
31014552--31014585	5	7.0	5	90	3	52	41	14	0	44	1.45
31027008--31027283	30	9.3	30	72	11	176	39	13	23	23	1.90
31027008--31027315	60	5.2	59	74	7	239	39	13	23	23	1.90
31027153--31027328	29	6.0	29	78	4	140	39	14	22	23	1.90
31027154--31027324	59	2.9	58	72	9	166	39	13	23	23	1.90
31027119--31027310	89	2.2	89	83	6	230	41	13	20	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31033876--31033977	40	2.5	40	82	6	118	33	20	12	33	1.90
31034002--31034088	36	2.4	36	82	3	104	36	16	14	32	1.89
31035257--31035301	17	2.4	18	82	14	56	33	0	20	46	1.51
31038993--31039030	19	2.0	19	85	10	51	21	42	0	36	1.53
31041611--31041749	46	3.0	46	87	2	199	35	8	25	30	1.86
31044610--31044662	27	2.0	26	82	14	63	43	0	1	54	1.11
31045131--31045224	10	10.0	10	75	16	67	61	0	2	36	1.08
31045129--31045303	29	6.0	29	69	17	89	59	0	3	36	1.19
31045177--31045237	30	2.1	29	90	3	95	62	0	4	32	1.17
31045311--31045366	19	2.9	19	77	15	62	62	1	8	26	1.35
31045316--31045369	9	5.9	9	73	26	51	62	1	5	29	1.28
31045405--31045434	16	1.9	15	93	6	51	16	0	3	80	0.85
31045553--31045606	9	5.9	9	76	10	56	33	1	1	62	1.16
31045542--31045602	19	3.3	19	81	6	72	27	3	3	65	1.24
31045552--31045659	27	3.9	27	73	17	96	37	1	0	60	1.14
31045794--31046065	90	3.0	87	85	7	341	33	10	19	36	1.86
31047226--31047291	32	2.1	32	97	0	123	40	3	3	53	1.32
31050998--31051272	62	4.5	62	87	0	327	30	8	14	46	1.74
31050998--31051272	93	3.0	93	86	0	354	30	8	14	46	1.74
31051245--31051294	23	2.2	23	85	0	64	30	12	16	42	1.84
31050998--31051274	31	9.0	31	85	1	297	30	7	15	46	1.74
31051252--31051297	23	2.0	23	95	0	83	26	10	21	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31055348--31055387	20	2.0	20	90	0	62	7	27	22	42	1.80
31057570--31057631	20	3.0	20	81	11	54	37	1	1	59	1.17
31058206--31058247	22	1.9	22	85	9	59	14	0	35	50	1.43
31067542--31067778	33	6.8	33	69	23	155	19	19	27	32	1.96
31067513--31067740	102	2.2	103	91	3	370	18	18	28	33	1.95
31071182--31071235	21	2.8	19	86	10	67	75	3	16	3	1.08
31083709--31083739	4	8.0	4	92	7	55	74	0	25	0	0.82
31093215--31093261	22	2.1	22	88	0	67	19	19	46	14	1.84
31093364--31093410	22	2.1	22	92	0	76	14	17	51	17	1.77
31093469--31093499	8	3.8	8	91	8	53	35	0	54	9	1.33
31093469--31093497	9	3.3	9	95	4	51	31	0	58	10	1.31
31094054--31094093	18	2.2	18	86	8	55	67	0	0	32	0.91
31094487--31094516	16	1.9	16	93	6	53	63	0	3	33	1.11
31097216--31097325	35	3.1	35	93	0	175	25	11	16	46	1.81
31097439--31097538	49	2.0	49	84	3	130	24	21	20	35	1.96
31100801--31100825	10	2.5	10	100	0	50	16	40	0	44	1.47
31103138--31103169	3	10.7	3	100	0	64	65	0	0	34	0.93
31103171--31103282	4	28.0	4	96	0	206	48	0	26	25	1.52
31103843--31103877	18	1.9	18	88	0	52	25	20	22	31	1.98
31108329--31108394	25	2.6	25	75	17	82	43	3	18	34	1.65
31114465--31114500	18	2.0	18	94	0	63	47	2	11	38	1.54
31117014--31117050	18	2.1	18	100	0	74	56	16	10	16	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31119282--31119530	50	4.8	50	84	4	275	20	29	24	25	1.99
31119281--31119530	100	2.4	104	87	6	348	21	29	24	25	1.99
31119625--31119656	13	2.5	13	94	0	55	56	12	0	31	1.37
31119868--31119925	30	1.9	30	89	0	89	31	24	3	41	1.71
31121060--31121348	43	6.7	43	78	6	257	29	29	16	24	1.97
31121060--31121287	43	5.3	43	83	2	260	27	29	17	25	1.97
31123898--31123927	15	2.1	15	93	6	53	36	16	0	46	1.47
31125200--31125338	40	3.5	40	77	1	145	22	18	17	41	1.91
31127811--31127841	14	2.2	14	94	0	53	74	0	9	16	1.07
31139012--31139065	27	2.0	28	85	10	76	12	14	11	61	1.58
31173568--31173616	20	2.5	20	79	0	62	28	32	12	26	1.92
31174308--31174355	21	2.3	21	82	7	53	33	4	16	45	1.67
31183041--31183319	125	2.2	125	89	0	434	29	16	23	30	1.96
31183596--31183637	15	2.6	16	77	7	50	14	0	28	57	1.38
31183599--31183637	16	2.4	17	79	12	55	12	0	30	56	1.37
31183609--31183645	9	4.3	9	83	10	51	13	0	29	56	1.37
31183683--31183962	126	2.2	125	91	1	445	28	16	23	31	1.96
31182865--31184100	643	1.9	639	94	1	2159	25	16	26	31	1.96
31185188--31185248	25	2.3	26	80	8	79	55	0	1	42	1.09
31193133--31193188	29	1.9	29	85	7	78	25	16	19	39	1.91
31194332--31194365	17	2.0	17	88	0	50	44	2	0	52	1.16
31196766--31196803	19	2.0	19	94	0	67	47	2	0	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31200129--31200171	22	2.0	21	82	13	52	34	4	20	39	1.74
31201599--31201647	20	2.5	20	89	0	71	53	0	24	22	1.47
31201600--31201655	20	2.8	19	86	5	67	51	0	26	21	1.48
31206899--31206958	28	2.2	27	78	3	66	46	0	8	45	1.33
31215188--31215313	39	3.2	39	93	0	207	18	31	13	36	1.89
31216880--31216921	21	2.0	21	85	0	57	47	0	26	26	1.52
31216940--31217012	31	2.4	31	78	0	83	34	9	26	30	1.88
31218733--31218762	16	1.9	15	93	6	51	46	13	13	26	1.80
31222725--31222782	24	2.4	24	81	16	66	72	8	5	13	1.26
31224991--31225058	27	2.5	28	78	9	77	27	30	19	22	1.97
31225032--31225152	57	2.1	57	84	3	154	24	23	16	35	1.95
31224991--31225122	28	4.7	27	70	14	72	27	27	15	29	1.96
31226530--31226620	39	2.3	39	81	12	114	38	21	16	23	1.93
31227165--31227324	7	22.4	7	68	8	54	21	1	31	45	1.62
31227214--31227296	36	2.3	36	83	4	96	21	1	32	44	1.60
31227229--31227324	29	3.4	27	77	9	75	20	0	33	45	1.52
31227233--31227324	7	13.0	7	73	6	60	20	0	34	44	1.52
31227250--31227324	21	3.5	21	78	3	78	20	0	33	46	1.51
31227255--31227302	15	3.3	15	85	5	62	16	0	41	41	1.48
31231026--31231069	23	1.9	22	82	17	54	36	25	0	38	1.56
31231117--31231207	45	2.0	45	93	0	155	31	24	17	26	1.97
31231204--31231398	51	3.9	50	81	5	232	30	28	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31231211--31231394	100	1.8	101	88	4	282	31	28	17	22	1.97
31235030--31235157	43	3.0	43	84	2	159	22	17	27	32	1.96
31235737--31235881	39	3.7	39	96	0	263	29	2	22	45	1.66
31235737--31235902	39	4.2	40	90	6	243	28	3	22	45	1.67
31237035--31237163	53	2.4	53	88	0	186	29	24	12	33	1.92
31237035--31237189	53	2.9	53	83	1	150	29	23	13	32	1.93
31238223--31238284	30	2.1	30	100	0	124	29	27	19	24	1.98
31243363--31243409	19	2.4	20	92	3	78	38	12	10	38	1.78
31252714--31252798	17	4.8	18	71	17	63	55	1	2	41	1.20
31252684--31252750	27	2.5	26	79	15	66	56	1	2	38	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207