genome.fa.s19.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  153  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46957818--46957874	30	1.9	30	85	3	80	29	24	7	38	1.82
46964517--46964581	20	3.3	19	72	6	51	40	15	24	20	1.91
46964444--46964601	40	4.0	40	82	2	194	35	15	28	20	1.93
46966818--46967047	87	2.6	86	83	6	291	24	24	13	36	1.92
46966813--46967036	58	3.8	58	80	6	256	25	25	12	37	1.91
46966815--46967045	29	7.9	29	81	6	225	25	24	13	36	1.92
46968346--46968415	35	2.0	36	85	2	97	40	20	10	30	1.85
46971486--46971543	26	2.2	26	84	0	71	39	22	13	24	1.90
46974688--46974726	18	2.1	19	85	4	53	53	23	2	20	1.57
46977637--46977694	18	3.4	18	69	9	50	36	1	3	58	1.25
46977642--46977748	19	5.3	19	71	17	74	35	0	4	58	1.25
46977677--46977746	19	3.6	19	82	5	79	32	1	5	60	1.29
46979837--46979894	23	2.5	23	85	0	80	20	13	13	51	1.75
46981787--46981836	19	2.5	20	81	18	59	10	10	10	70	1.36
46996627--46996888	138	1.9	138	88	1	391	40	6	17	35	1.76
46999569--46999620	26	2.0	26	92	0	86	28	34	21	15	1.94
46999581--46999731	72	2.1	71	91	2	241	30	29	16	23	1.96
46999650--46999873	104	2.2	104	93	1	378	31	31	19	17	1.95
47000202--47000265	30	2.2	29	81	10	76	29	28	6	35	1.82
47000209--47000265	30	1.9	30	85	3	80	29	24	7	38	1.82
47007161--47007384	104	2.2	104	89	4	337	31	31	18	17	1.95
47007717--47007777	30	2.0	30	83	0	77	31	24	4	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47016320--47016348	14	2.1	14	100	0	58	37	13	13	34	1.85
47018526--47018572	19	2.5	19	89	0	67	46	21	2	29	1.63
47020463--47020529	26	2.6	26	85	0	89	25	23	23	26	2.00
47024660--47024755	49	2.0	49	81	4	113	23	9	34	32	1.87
47025503--47025552	26	1.9	26	100	0	100	30	28	16	26	1.96
47031268--47031406	50	2.8	49	76	8	136	20	28	23	27	1.99
47035799--47035848	25	2.0	25	100	0	100	48	24	0	28	1.52
47035805--47035851	15	3.5	15	67	27	50	48	25	0	25	1.51
47048158--47048276	23	5.2	23	77	7	125	32	25	18	23	1.97
47048165--47048272	46	2.3	46	85	0	144	32	24	20	23	1.98
47055618--47055695	30	2.6	30	93	0	138	28	20	28	23	1.99
47055775--47055881	26	4.1	26	83	0	142	37	25	18	18	1.94
47055775--47055881	52	2.1	52	92	0	178	37	25	18	18	1.94
47056088--47056243	80	1.9	81	85	1	215	23	14	19	42	1.88
47056074--47056243	27	6.3	27	80	2	191	22	15	18	42	1.88
47057264--47057339	36	2.1	36	83	9	93	17	43	2	36	1.63
47060187--47060220	16	2.2	15	89	5	50	44	0	0	55	0.99
47063945--47064028	27	3.2	26	74	3	80	20	15	20	44	1.87
47064249--47064282	17	1.9	17	88	5	50	11	44	32	11	1.77
47065141--47065222	41	2.0	41	100	0	164	43	9	31	14	1.78
47065582--47065635	25	2.2	25	82	0	63	18	44	11	25	1.83
47074429--47074453	12	2.1	12	100	0	50	16	8	40	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47078094--47078279	40	4.7	40	86	5	234	26	26	21	24	1.99
47085960--47086145	40	4.7	40	87	5	243	26	26	22	24	2.00
47114706--47114734	13	2.2	13	100	0	58	37	6	24	31	1.82
47116819--47116853	6	5.8	6	96	0	61	45	17	0	37	1.48
47118734--47118890	43	3.6	43	80	5	165	29	26	22	22	1.99
47125919--47125966	23	2.1	23	96	0	87	20	31	4	43	1.71
47127070--47127114	20	2.2	20	84	4	54	26	24	6	42	1.79
47130086--47130118	15	2.1	17	88	11	52	66	0	15	18	1.25
47133409--47133445	19	2.0	19	89	5	58	29	2	0	67	1.04
47133438--47133508	10	7.0	10	73	13	56	29	0	7	63	1.21
47133440--47133503	19	3.3	19	76	12	67	28	0	6	65	1.16
47134838--47134874	20	1.9	19	89	10	58	24	32	0	43	1.55
47135526--47135551	5	5.2	5	100	0	52	19	19	19	42	1.90
47139948--47139976	15	1.9	15	100	0	58	55	6	3	34	1.44
47141159--47141239	42	2.0	41	90	2	126	25	24	2	46	1.65
47142813--47142849	4	9.2	4	93	0	65	24	29	0	45	1.53
47142813--47142856	8	5.5	8	94	0	52	22	29	2	45	1.65
47151895--47152190	146	2.0	146	88	3	436	37	4	11	45	1.61
47153477--47153961	27	18.1	27	78	8	175	37	21	19	21	1.95
47153574--47153961	27	14.5	27	83	2	424	36	20	20	23	1.95
47154128--47154188	27	2.3	27	83	11	72	21	24	21	32	1.98
47154232--47154416	32	5.7	33	75	5	162	20	19	22	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47154232--47154408	66	2.7	63	85	5	203	19	18	22	38	1.93
47159521--47159710	93	2.0	93	95	0	344	34	8	24	32	1.86
47162209--47162278	35	2.0	35	86	8	97	37	22	8	31	1.85
47162500--47162612	41	2.8	41	85	5	122	28	27	19	24	1.99
47162540--47162624	41	2.0	42	90	2	136	29	25	17	27	1.98
47164289--47164313	13	1.9	13	100	0	50	68	24	0	8	1.16
47170162--47170274	41	2.8	41	85	5	122	28	27	19	24	1.99
47170202--47170286	41	2.0	42	90	2	136	29	25	17	27	1.98
47171955--47171979	13	1.9	13	100	0	50	68	24	0	8	1.16
47201580--47202005	70	6.1	70	76	4	311	32	21	20	25	1.97
47202058--47202112	20	2.7	20	88	2	83	41	16	1	40	1.59
47206843--47207245	27	14.9	27	78	5	359	42	20	17	19	1.90
47207288--47207331	23	1.9	23	90	9	72	22	4	22	50	1.67
47207302--47207368	24	2.8	23	77	6	71	17	5	25	50	1.69
47207448--47207499	27	1.9	27	85	14	72	25	30	15	28	1.96
47207500--47207555	26	2.2	26	83	0	67	17	23	26	32	1.97
47207546--47207814	32	8.4	32	79	7	269	21	19	21	37	1.94
47207546--47207794	130	1.9	130	83	8	319	21	19	21	37	1.95
47207871--47207935	26	2.5	26	87	0	103	24	24	16	33	1.96
47208051--47208116	28	2.4	28	80	7	73	24	25	19	30	1.98
47212352--47212788	70	6.3	70	76	6	343	30	21	20	27	1.98
47212384--47212771	207	1.9	206	83	4	512	29	20	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47212822--47212864	20	2.2	20	91	0	68	41	18	0	39	1.51
47212822--47212873	20	2.6	20	84	0	59	40	17	1	40	1.60
47216166--47216463	40	7.5	40	71	10	207	35	18	26	19	1.94
47216194--47216463	80	3.4	80	79	4	269	36	18	25	19	1.94
47224361--47224510	40	3.8	40	80	3	167	40	16	25	18	1.91
47227802--47227848	24	1.9	25	82	4	60	40	2	34	23	1.67
47228498--47228667	27	6.3	27	80	2	153	42	20	17	19	1.89
47228508--47228669	54	3.0	54	81	7	177	40	19	18	20	1.91
47228508--47228666	81	2.0	81	83	2	203	41	19	18	20	1.90
47228841--47228917	26	3.0	26	88	0	109	20	20	16	41	1.90
47229027--47229116	28	3.2	28	84	6	103	20	22	24	33	1.97
47231293--47231461	27	6.3	27	85	4	180	40	18	20	20	1.92
47231293--47231464	80	2.1	82	81	2	213	39	18	20	20	1.93
47231625--47231682	26	2.2	26	87	3	80	22	24	15	37	1.93
47231793--47231886	28	3.4	28	81	7	111	20	22	23	34	1.97
47231849--47231919	33	2.1	34	86	2	99	22	22	25	29	1.99
47243640--47243723	28	3.0	27	77	10	87	27	17	7	47	1.74
47243652--47243761	57	1.9	57	81	3	132	24	15	10	50	1.75
47244645--47244717	36	2.0	36	97	0	137	35	13	15	35	1.87
47251045--47251286	50	4.7	51	75	7	179	28	21	26	23	1.99
47257107--47257358	56	4.7	56	83	5	294	27	19	28	24	1.99
47257112--47257358	100	2.3	107	82	8	283	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47257224--47257409	50	3.8	47	78	9	167	27	20	27	24	1.99
47262410--47262446	15	2.4	15	90	4	56	21	2	5	70	1.20
47269787--47269858	27	2.7	27	82	2	92	30	18	18	33	1.94
47272123--47272201	36	2.2	36	93	0	131	7	24	13	54	1.65
47272166--47272191	13	2.0	13	100	0	52	0	30	7	61	1.24
47277948--47279070	120	9.4	120	98	0	2149	44	2	5	47	1.39
47278299--47278333	18	2.0	17	88	5	52	45	0	0	54	0.99
47278899--47278933	18	2.0	17	88	5	52	45	0	0	54	0.99
47279019--47279053	18	2.0	17	88	5	52	45	0	0	54	0.99
47279218--47279308	45	2.0	45	85	2	121	37	28	6	27	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207