genome.fa.s19.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  193  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58229425--58229473	18	2.8	18	85	11	66	63	8	0	28	1.23
58229418--58229485	26	2.5	28	79	9	70	63	5	0	30	1.18
58229451--58229483	16	2.0	17	88	5	50	60	3	0	36	1.12
58229640--58229693	19	2.8	20	81	10	60	61	0	5	33	1.19
58229633--58229691	19	3.2	19	75	17	54	66	0	5	28	1.13
58230509--58230567	19	2.9	21	69	19	52	59	3	3	33	1.31
58230482--58230575	40	2.4	39	80	5	109	59	2	3	35	1.25
58230482--58230580	21	4.9	20	68	19	55	59	2	3	35	1.24
58232610--58232665	26	2.2	26	96	0	103	39	25	12	23	1.89
58235590--58235617	2	14.0	2	100	0	56	50	0	0	50	1.00
58237456--58237524	34	2.0	34	97	0	129	47	5	24	21	1.72
58240679--58240723	19	2.4	19	81	7	56	60	0	4	35	1.17
58240715--58240750	18	2.1	18	89	5	56	58	0	5	36	1.22
58241150--58241187	15	2.4	17	78	13	53	55	2	5	36	1.37
58242378--58242539	88	1.8	89	88	4	247	43	24	1	30	1.62
58242584--58242622	12	3.1	12	85	10	51	30	46	0	23	1.53
58242794--58242818	13	1.9	13	100	0	50	64	0	0	36	0.94
58242914--58242992	41	1.9	41	89	0	122	34	24	20	21	1.97
58242936--58243845	114	8.0	114	88	1	1209	25	25	23	26	2.00
58247594--58247658	23	2.8	23	88	0	94	23	26	4	46	1.71
58252071--58252138	23	3.0	23	88	0	100	23	27	4	44	1.72
58255152--58255185	17	2.0	17	88	11	52	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58261941--58261973	16	2.0	17	88	5	50	42	33	6	18	1.75
58264972--58264998	7	3.9	7	100	0	54	44	0	0	55	0.99
58271897--58271938	16	2.6	17	85	7	52	54	0	0	45	0.99
58271876--58271948	26	2.9	25	72	8	67	43	0	0	56	0.99
58271874--58271994	61	2.0	61	90	0	188	42	0	0	55	1.11
58279169--58279256	10	8.3	11	68	21	55	60	1	5	32	1.28
58279171--58279257	15	5.5	15	75	10	68	60	1	5	32	1.27
58279196--58279256	31	2.0	30	84	12	79	60	1	3	34	1.23
58281182--58281241	23	2.6	23	87	10	79	41	16	15	26	1.88
58281190--58281381	23	8.3	22	69	11	80	43	19	13	23	1.86
58281165--58281534	140	2.6	140	94	0	632	43	20	12	24	1.86
58281165--58281538	70	5.3	70	88	2	545	43	19	12	24	1.86
58281165--58281713	95	5.8	94	75	13	386	43	18	12	24	1.85
58281368--58281713	165	2.1	165	90	2	543	43	17	13	25	1.85
58281508--58281562	25	2.2	25	93	0	92	43	16	9	30	1.79
58281190--58281703	70	7.3	69	83	7	408	44	18	12	24	1.85
58282449--58282518	28	2.5	28	86	4	88	28	28	12	30	1.93
58290637--58290679	20	2.0	21	86	8	61	30	4	20	44	1.72
58292150--58292345	39	5.0	39	82	2	207	22	35	6	35	1.80
58293137--58293480	177	1.9	177	90	2	548	19	34	11	33	1.88
58295387--58295411	13	1.9	13	100	0	50	8	16	20	56	1.65
58302147--58302270	18	6.9	19	75	9	64	20	42	0	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58302182--58302320	30	4.8	30	80	10	155	19	41	0	38	1.57
58302149--58302362	54	4.0	54	81	1	214	18	41	2	37	1.64
58302147--58302329	24	7.1	24	77	9	116	19	42	1	37	1.61
58302147--58302309	12	13.6	12	79	2	139	19	42	1	36	1.59
58302197--58302350	48	3.2	48	78	5	150	18	38	1	40	1.62
58303307--58303349	20	2.2	20	87	8	61	30	4	0	65	1.13
58303404--58303478	17	4.3	17	75	17	73	29	2	1	66	1.13
58303414--58303487	9	8.3	9	73	21	52	27	2	2	67	1.17
58303454--58303490	17	2.2	17	90	0	56	24	2	2	70	1.14
58303438--58303490	9	6.2	8	77	18	54	26	1	3	67	1.17
58303404--58303493	26	3.4	26	77	10	85	28	2	2	66	1.15
58304502--58304539	18	2.1	18	85	9	51	34	0	2	63	1.09
58304912--58304967	26	2.1	25	83	12	67	42	10	5	41	1.62
58305480--58305574	40	2.4	41	82	7	124	33	4	2	60	1.28
58305481--58305555	21	3.7	21	71	16	68	34	4	2	58	1.31
58305628--58305666	18	2.2	18	90	9	62	41	0	0	58	0.98
58305673--58305748	10	7.9	10	73	16	54	27	1	3	67	1.17
58305696--58305746	19	2.8	17	77	13	57	29	0	3	66	1.09
58309714--58309821	29	3.8	29	84	7	150	30	21	5	42	1.75
58310210--58310274	4	15.8	4	90	9	96	75	0	24	0	0.81
58310187--58310269	12	6.8	12	82	10	73	73	0	26	0	0.83
58310196--58310283	12	6.8	13	83	14	96	77	0	22	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58310206--58310287	8	9.9	8	77	17	69	79	0	20	0	0.74
58310382--58310422	21	2.0	21	85	0	55	80	7	12	0	0.90
58310439--58310508	24	2.9	24	97	0	131	22	45	31	0	1.53
58310436--58310515	24	3.6	21	85	14	83	23	46	30	0	1.53
58310565--58310598	7	5.1	7	89	10	54	88	0	11	0	0.52
58310554--58310598	20	2.3	20	88	3	65	82	0	17	0	0.68
58310565--58310605	13	3.2	13	89	6	57	85	0	14	0	0.60
58310565--58310606	7	6.7	6	86	13	50	83	0	16	0	0.65
58311141--58311197	15	3.6	15	76	19	62	36	7	8	47	1.62
58311141--58311198	16	3.6	16	76	17	66	37	6	8	46	1.61
58311699--58311728	15	1.9	16	93	6	53	20	0	0	80	0.72
58321129--58322332	81	15.0	77	86	7	1354	27	16	19	35	1.94
58321146--58322355	157	7.6	157	88	6	1406	28	17	19	35	1.94
58322519--58322626	29	3.8	29	81	7	141	31	21	4	42	1.73
58322514--58322622	58	1.9	58	86	5	159	35	21	4	38	1.74
58322988--58323063	3	24.3	3	80	19	61	71	0	28	0	0.87
58322988--58323058	20	3.5	21	80	16	87	70	0	29	0	0.88
58323000--58323064	4	16.8	4	84	15	59	72	0	27	0	0.85
58323218--58323273	24	2.7	19	73	23	58	25	46	28	0	1.53
58323255--58323284	9	3.4	9	95	4	53	30	43	26	0	1.55
58323314--58323360	21	2.3	20	85	7	67	85	0	14	0	0.61
58323326--58323367	8	5.1	8	83	11	50	85	0	14	0	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58323326--58323357	14	2.2	15	94	5	57	87	0	12	0	0.54
58323839--58323924	36	2.4	35	84	5	100	31	11	12	44	1.79
58323899--58323955	15	3.6	15	76	19	62	36	7	8	47	1.62
58323867--58323956	16	5.4	16	71	18	67	35	8	11	44	1.71
58334098--58334138	19	2.1	19	86	9	55	9	4	7	78	1.10
58336876--58336907	6	5.3	6	92	0	55	18	3	62	15	1.45
58336876--58336913	18	2.1	18	85	9	51	21	2	63	13	1.42
58344093--58344126	16	2.1	16	88	0	50	50	14	17	17	1.79
58346923--58346963	21	2.0	21	90	0	64	29	21	29	19	1.98
58348779--58348812	16	2.1	16	88	0	50	50	14	17	17	1.79
58359733--58360552	271	3.0	271	98	0	1577	42	14	15	27	1.86
58362594--58362627	3	11.3	3	100	0	68	67	0	32	0	0.91
58363642--58363674	13	2.5	13	86	13	50	33	0	3	63	1.10
58364970--58365033	21	3.1	20	73	6	65	35	21	21	20	1.96
58366767--58366827	24	2.5	23	80	15	61	49	4	0	45	1.23
58366775--58366847	35	2.1	34	85	7	94	47	5	0	46	1.25
58367246--58367315	35	2.0	35	91	0	113	51	1	8	38	1.41
58370811--58371367	189	2.9	189	88	0	817	34	11	34	19	1.88
58372038--58372234	39	5.0	39	84	0	241	34	7	36	22	1.81
58375704--58375745	19	2.2	19	87	8	59	69	4	0	26	1.08
58375713--58375764	16	3.1	17	81	13	54	61	3	0	34	1.14
58375703--58375836	10	14.4	9	69	20	57	64	2	2	29	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58375893--58375937	21	2.1	21	84	8	56	66	0	4	28	1.11
58378354--58378388	16	2.2	16	90	10	54	20	0	22	57	1.41
58382982--58383080	49	2.0	49	98	0	189	36	28	16	19	1.93
58383772--58383818	16	3.0	16	78	12	53	51	2	0	46	1.13
58383892--58383938	16	3.0	16	78	12	53	51	2	0	46	1.13
58384012--58384058	16	3.0	16	78	12	53	51	2	0	46	1.13
58383669--58384171	120	4.2	120	97	0	936	49	5	1	42	1.37
58385225--58385276	25	2.1	25	96	0	95	44	15	25	15	1.85
58385377--58385647	137	2.0	138	91	2	438	46	14	14	25	1.81
58387842--58387884	12	3.4	12	82	14	52	34	48	13	2	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207