genome.fa.s19.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  151  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46331985--46332018	17	1.9	17	88	5	50	67	2	0	29	1.05
46332011--46332052	22	1.9	22	85	9	59	50	9	0	40	1.35
46332364--46332411	24	2.0	24	91	0	78	52	10	4	33	1.55
46334330--46334377	24	2.0	24	91	0	78	52	10	4	33	1.55
46336969--46337021	24	2.3	23	83	3	61	56	1	3	37	1.28
46340260--46340331	22	3.2	22	76	3	90	40	13	8	37	1.75
46340277--46340348	23	3.2	23	76	4	92	41	15	6	36	1.74
46340260--46340349	45	2.0	45	100	0	180	40	15	8	35	1.79
46346881--46346909	11	2.5	12	88	11	51	20	0	0	79	0.74
46347714--46347761	18	2.8	17	90	6	78	37	4	6	52	1.46
46353407--46353902	50	9.7	50	79	5	449	28	20	27	24	1.99
46353411--46353853	156	2.9	150	79	6	402	27	20	28	24	1.99
46353407--46353853	206	2.2	206	93	0	750	27	20	27	24	1.99
46356160--46356245	30	2.9	30	83	0	109	32	20	18	27	1.96
46361535--46361560	11	2.4	11	100	0	52	80	0	0	19	0.71
46362483--46362515	16	2.1	16	88	11	50	54	9	12	24	1.66
46369634--46369681	17	2.8	18	81	9	64	18	4	2	75	1.07
46372523--46372710	50	3.6	50	78	4	169	27	20	26	25	1.99
46377402--46377502	35	2.9	35	78	0	112	22	17	15	43	1.87
46378819--46378851	11	3.1	11	91	4	50	66	0	24	9	1.20
46378960--46379144	101	1.8	102	89	3	293	23	16	27	32	1.96
46378960--46379142	51	3.6	50	78	6	172	24	16	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46379153--46379240	46	2.0	44	82	8	106	26	17	23	32	1.96
46383372--46383413	21	2.0	21	90	9	68	52	19	7	21	1.69
46387340--46387390	3	17.0	3	95	0	93	64	0	1	33	1.05
46390329--46390371	22	2.0	22	90	0	68	46	0	0	53	1.00
46395593--46395752	57	2.8	57	88	0	248	25	31	13	28	1.94
46400615--46400819	99	2.0	102	88	2	308	46	9	12	31	1.74
46400860--46400922	31	2.0	31	87	6	92	33	11	11	44	1.75
46406294--46406530	75	3.1	77	91	4	379	54	7	9	28	1.59
46406714--46406777	33	1.9	33	96	0	119	23	15	46	14	1.82
46406714--46406798	33	2.6	33	88	0	107	24	12	47	15	1.81
46407882--46407945	31	2.1	31	100	0	128	35	12	28	23	1.91
46409186--46409242	30	1.9	29	89	3	87	63	8	0	28	1.24
46409264--46409332	23	2.8	23	80	8	75	0	28	0	71	0.87
46410812--46410889	27	2.9	26	80	17	88	30	24	2	42	1.68
46411416--46411499	12	7.8	11	79	14	70	75	0	23	1	0.88
46411416--46411498	10	7.8	10	77	20	64	74	0	24	1	0.89
46411424--46411500	28	2.6	31	84	13	92	74	0	24	1	0.90
46411433--46411515	28	2.9	28	82	12	89	74	0	20	4	0.99
46411635--46411678	24	2.0	22	95	4	63	68	4	27	0	1.09
46412472--46412512	17	2.3	19	79	8	50	36	14	4	43	1.67
46412669--46412716	19	2.6	17	81	12	51	50	8	2	39	1.44
46424404--46424844	123	3.6	123	92	4	737	27	14	21	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46424856--46427196	72	32.6	72	94	1	4001	31	16	18	34	1.93
46427146--46427414	55	5.0	54	93	2	452	30	14	18	36	1.91
46427655--46427691	15	2.4	16	90	4	58	72	2	0	24	0.97
46427687--46427788	30	3.4	30	86	2	134	29	21	3	45	1.70
46428218--46428257	14	2.9	15	82	14	50	55	0	42	2	1.13
46428334--46428392	12	5.2	11	81	18	68	74	0	25	0	0.82
46428334--46428391	10	5.2	11	78	17	57	74	0	25	0	0.82
46428334--46428424	35	2.7	35	86	6	116	73	0	25	1	0.90
46428343--46428424	12	7.3	11	75	19	71	75	0	23	1	0.87
46428355--46428437	23	3.7	23	75	18	70	77	0	19	3	0.92
46428366--46428436	22	3.2	20	78	11	61	77	0	18	4	0.93
46428558--46428613	24	2.3	24	93	0	103	66	8	25	0	1.21
46428751--46428784	12	2.6	13	90	9	52	85	0	14	0	0.60
46429231--46429292	18	3.5	17	77	14	63	24	17	11	46	1.81
46429312--46429637	17	18.8	17	65	15	87	33	13	11	42	1.79
46429303--46429391	33	2.7	33	85	5	108	43	12	10	33	1.76
46429335--46429393	16	3.6	16	80	8	73	44	10	8	37	1.69
46429336--46429392	18	3.4	17	76	11	55	45	10	8	35	1.70
46429388--46429637	18	14.3	17	70	13	134	32	13	11	43	1.79
46429343--46429553	35	6.0	35	69	9	117	31	11	10	45	1.75
46429386--46429489	52	2.0	53	86	1	147	31	14	9	44	1.77
46429687--46429722	17	2.2	17	90	5	56	36	8	8	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46429795--46429848	17	3.2	16	81	5	63	31	7	9	51	1.61
46429795--46429848	16	3.3	15	80	15	54	31	7	9	51	1.61
46431481--46431658	29	6.0	29	74	9	128	24	22	25	27	2.00
46431661--46431737	36	2.1	36	85	0	100	37	19	12	29	1.89
46433035--46433112	31	2.6	30	76	10	79	43	19	8	28	1.81
46433080--46433594	184	2.8	184	90	1	766	43	21	8	27	1.81
46433193--46433509	91	3.5	91	68	9	257	42	20	9	27	1.83
46448101--46448131	16	1.9	16	93	0	53	41	12	12	32	1.81
46452036--46452240	102	2.0	101	95	0	365	22	18	14	45	1.85
46456046--46456142	42	2.3	43	80	1	115	27	19	25	26	1.99
46455989--46456160	43	4.0	43	72	10	127	25	18	26	30	1.98
46460149--46460188	16	2.5	15	84	11	53	47	2	0	50	1.14
46460117--46460188	32	2.2	31	83	11	83	45	4	1	48	1.30
46460477--46460596	63	1.9	61	86	8	170	32	11	13	42	1.80
46460719--46460802	33	2.6	31	77	15	89	64	4	7	23	1.38
46461351--46461398	20	2.5	20	86	3	71	31	0	8	60	1.26
46466762--46466787	3	8.7	3	100	0	52	0	30	0	69	0.89
46469594--46469701	27	4.0	26	76	5	90	30	24	13	31	1.94
46471299--46471368	27	2.6	27	95	2	113	31	28	12	27	1.93
46471299--46471396	28	3.5	28	90	2	135	31	28	13	26	1.94
46475868--46476161	143	2.0	144	94	0	518	31	15	20	32	1.93
46484225--46484303	39	2.0	39	97	0	149	22	10	18	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46495310--46495365	25	2.2	25	83	0	67	33	21	14	30	1.93
46496216--46496251	16	2.2	17	90	5	56	11	52	0	36	1.37
46502583--46502612	7	4.3	7	100	0	60	13	56	0	30	1.37
46508393--46508591	81	2.5	81	82	0	218	32	17	24	26	1.97
46510945--46510992	10	4.6	10	80	10	51	60	0	4	35	1.16
46512880--46512940	30	2.1	30	81	3	70	52	9	6	31	1.60
46523723--46523770	20	2.4	20	100	0	96	33	29	10	27	1.90
46540348--46540385	14	2.7	14	91	0	58	36	10	5	47	1.61
46541188--46541215	9	3.1	9	100	0	56	57	10	0	32	1.33
46541158--46541358	59	3.1	68	84	13	307	45	8	4	40	1.57
46541347--46541388	16	2.6	16	92	0	66	42	7	2	47	1.43
46541362--46541417	23	2.5	23	82	2	69	44	1	1	51	1.22
46541605--46541635	6	5.2	6	100	0	62	48	0	35	16	1.46
46544073--46544128	29	2.0	28	86	10	78	39	19	7	33	1.79
46544303--46544346	14	3.1	14	86	3	61	59	4	0	36	1.18
46544307--46544390	25	3.2	25	75	11	78	54	2	0	42	1.13
46545558--46545640	38	2.2	38	82	4	96	65	2	1	31	1.13
46545614--46545680	30	2.3	30	82	12	77	59	4	0	35	1.18
46545620--46545689	29	2.2	33	75	14	76	62	4	0	32	1.14
46545852--46545905	24	2.2	24	76	0	63	42	14	5	37	1.69
46547183--46547221	17	2.2	18	86	13	55	74	2	17	5	1.12
46552910--46552936	3	9.0	3	100	0	54	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46562599--46562629	5	6.2	5	100	0	62	41	19	0	38	1.51
46571068--46571205	43	3.3	42	77	8	145	26	25	16	31	1.97
46573390--46573427	14	2.7	15	88	8	53	23	23	21	31	1.98
46579557--46579587	12	2.6	12	100	0	62	35	22	0	41	1.54
46579558--46579597	14	3.1	13	89	10	64	37	22	0	40	1.54
46584497--46584555	15	3.8	16	86	10	86	32	16	11	38	1.86
46585531--46585581	21	2.4	21	83	9	59	43	27	7	21	1.80
46596466--46596606	67	2.1	67	95	0	255	38	6	19	36	1.77
46605719--46605791	34	2.1	34	94	0	128	31	23	20	24	1.98
46611029--46611076	17	2.9	17	75	3	53	45	10	16	27	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207