genome.fa.s19.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  173  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53433508--53433606	23	4.3	23	88	0	153	31	27	20	21	1.98
53433508--53433606	46	2.2	46	92	0	171	31	27	20	21	1.98
53442203--53442255	6	8.7	6	91	2	79	62	0	20	16	1.33
53445915--53445939	6	4.2	6	100	0	50	20	0	32	48	1.50
53447514--53447569	24	2.3	24	78	9	60	46	0	1	51	1.11
53448498--53448540	22	2.0	22	86	9	61	60	11	9	18	1.57
53451425--53451468	6	7.3	6	84	0	52	20	2	68	9	1.28
53451546--53451575	9	3.3	9	95	0	51	13	0	63	23	1.29
53451907--53451938	6	5.3	6	96	0	55	18	0	68	12	1.20
53451998--53452028	6	5.2	6	92	0	53	19	0	64	16	1.29
53452111--53452154	3	14.7	3	80	0	52	4	2	70	22	1.17
53452102--53452151	6	8.2	6	86	2	55	8	2	70	20	1.23
53452108--53452154	12	3.9	12	85	0	67	6	2	70	21	1.20
53452271--53452306	18	2.0	18	88	0	54	22	2	63	11	1.39
53453793--53453971	89	2.0	89	100	0	358	30	14	20	34	1.92
53473039--53473077	17	2.3	17	95	0	69	46	2	0	51	1.14
53473382--53473413	15	2.2	15	94	5	57	37	3	6	53	1.42
53473317--53473565	126	2.0	126	96	0	462	38	16	6	39	1.74
53480979--53481010	15	2.2	15	94	5	57	37	3	6	53	1.42
53480914--53481162	126	2.0	126	96	0	462	38	16	6	39	1.74
53481227--53481258	8	4.0	8	95	0	55	53	0	0	46	1.00
53481300--53481357	8	6.8	8	77	11	53	58	1	0	39	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53481300--53481341	9	4.8	9	82	2	50	61	2	0	35	1.09
53481301--53481357	17	3.3	17	78	9	62	57	1	0	40	1.09
53481337--53481386	9	5.7	9	76	21	52	52	2	0	46	1.12
53481332--53481403	16	4.2	16	75	16	65	54	2	1	41	1.23
53481293--53481385	35	2.7	34	77	11	100	55	2	0	41	1.11
53486319--53486349	14	2.2	14	94	0	53	51	0	3	45	1.17
53487071--53487119	25	2.0	25	92	8	82	30	2	4	63	1.24
53490080--53490208	6	21.2	6	94	3	60	66	14	0	17	1.29
53490096--53490208	6	18.8	6	98	0	217	65	16	0	16	1.33
53490248--53490304	9	6.4	9	86	11	82	26	10	22	40	1.86
53497578--53497643	28	2.4	27	76	16	71	28	24	24	22	1.99
53497840--53498091	32	7.9	32	79	2	229	38	21	19	21	1.94
53497852--53498091	96	2.5	96	80	2	259	38	22	18	20	1.93
53498094--53498147	26	2.1	26	89	0	81	37	25	20	16	1.93
53498129--53498194	27	2.5	26	85	9	80	33	21	24	21	1.97
53498366--53498778	27	15.4	27	79	6	304	23	20	19	36	1.95
53498528--53498849	27	12.0	27	73	12	153	20	18	21	40	1.92
53498366--53498831	81	5.8	81	72	11	296	22	20	19	36	1.95
53498380--53498850	54	8.8	54	76	5	265	22	19	21	37	1.95
53501917--53501976	9	6.4	9	83	7	75	38	26	8	26	1.85
53501914--53501970	20	3.0	20	87	7	82	42	28	7	22	1.80
53501917--53501976	18	3.2	18	90	4	84	38	26	8	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53501984--53502044	17	3.4	17	70	12	59	52	14	1	31	1.52
53501979--53502049	37	1.9	37	97	0	133	47	16	2	32	1.61
53501982--53502066	37	2.3	37	88	8	120	49	15	3	31	1.61
53503918--53504380	234	2.0	234	96	0	847	31	24	11	32	1.91
53506903--53507084	43	4.3	43	78	4	179	21	30	30	17	1.96
53508365--53508420	25	2.2	25	87	0	76	33	14	28	23	1.94
53515930--53515985	25	2.2	25	87	0	76	32	16	28	23	1.96
53516272--53516297	5	5.2	5	100	0	52	42	19	0	38	1.51
53518164--53518236	29	2.6	28	82	2	83	31	23	19	26	1.98
53518190--53518273	28	3.0	28	87	0	114	34	17	13	34	1.89
53522327--53522391	31	2.0	33	82	5	80	40	9	7	43	1.65
53528852--53529081	90	2.5	90	84	0	298	24	15	26	34	1.94
53542023--53542052	2	15.0	2	100	0	60	50	0	0	50	1.00
53544961--53545093	43	3.1	43	81	3	151	38	26	18	17	1.92
53547768--53547828	29	2.2	29	85	5	81	19	31	26	22	1.98
53554205--53554239	6	5.8	6	93	0	61	51	11	0	37	1.38
53554203--53554277	2	37.0	2	72	2	51	46	8	5	40	1.56
53554203--53554243	12	3.4	12	93	0	73	51	9	0	39	1.35
53554403--53554436	10	3.3	10	87	4	50	50	0	2	47	1.16
53558344--53558803	206	2.3	198	86	6	595	28	10	14	46	1.78
53558344--53558803	199	2.3	201	85	7	601	28	10	14	46	1.78
53578881--53578980	49	2.0	49	98	0	191	53	7	12	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53580374--53580411	16	2.3	17	86	9	60	71	13	0	15	1.16
53583606--53583651	24	1.9	24	86	8	67	63	0	2	34	1.07
53584951--53585011	30	2.0	30	90	6	97	34	0	45	19	1.51
53585017--53585041	8	3.1	8	100	0	50	0	0	64	36	0.94
53585354--53585391	20	1.9	20	84	10	51	31	0	0	68	0.90
53585918--53585972	26	2.0	28	83	13	71	52	1	1	43	1.22
53589035--53589069	15	2.3	15	90	0	52	28	2	8	60	1.41
53590415--53590473	25	2.4	25	82	2	66	33	11	23	30	1.91
53596319--53596365	22	2.1	22	88	0	67	72	0	12	14	1.13
53596324--53596365	14	3.0	14	89	0	57	73	0	11	14	1.09
53597711--53598617	132	6.9	132	89	1	1318	29	18	23	28	1.98
53598612--53599101	100	4.9	100	92	1	777	28	20	24	25	1.99
53598631--53599103	50	9.5	50	71	3	342	29	20	24	25	1.99
53616121--53616334	76	2.8	77	91	3	331	30	26	20	21	1.98
53616281--53616358	26	2.6	32	84	13	96	33	29	21	15	1.94
53616311--53616362	26	2.0	26	100	0	104	26	30	23	19	1.98
53616235--53616466	102	2.3	103	96	1	421	31	27	21	20	1.98
53616414--53616467	27	2.0	28	96	3	101	25	29	24	20	1.99
53622369--53622393	11	2.3	11	100	0	50	32	0	0	68	0.90
53622696--53622739	23	1.9	22	82	17	54	36	25	0	38	1.56
53622879--53622959	26	3.2	25	64	22	60	33	29	14	22	1.94
53622874--53623069	51	3.9	50	79	4	223	30	29	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53622881--53623065	101	1.8	101	89	3	291	30	28	17	23	1.97
53625260--53625295	18	1.9	19	88	5	56	36	19	0	44	1.51
53628159--53628211	14	3.8	14	77	7	54	35	20	11	32	1.88
53628171--53628219	14	3.5	14	77	0	53	32	24	10	32	1.89
53639449--53639570	44	2.8	44	81	12	144	27	16	18	38	1.91
53649793--53649822	15	2.0	15	100	0	60	46	20	6	26	1.75
53652396--53653251	175	4.9	175	95	0	1525	28	21	19	31	1.97
53652474--53653339	44	19.8	44	68	12	343	28	21	19	30	1.97
53653388--53653680	87	3.4	87	88	0	397	27	25	19	27	1.99
53654823--53654869	21	2.2	21	84	0	58	23	36	12	27	1.91
53654952--53654986	7	5.0	7	86	13	54	14	14	0	71	1.15
53655795--53655847	7	8.0	7	76	16	51	13	0	3	83	0.79
53655781--53655850	25	2.7	25	86	10	97	12	1	5	80	0.96
53655798--53655852	18	3.0	18	84	7	67	12	0	5	81	0.84
53657084--53657135	19	2.7	20	82	5	63	46	11	17	25	1.81
53660509--53660548	16	2.5	17	84	11	50	5	5	35	55	1.44
53662471--53662520	21	2.4	21	96	3	93	62	4	0	34	1.14
53663378--53663412	10	3.6	10	88	7	54	22	0	2	74	0.95
53668566--53668705	42	3.4	41	80	3	147	35	15	20	29	1.93
53670551--53670588	20	1.9	19	89	5	58	23	7	0	68	1.16
53670550--53670619	24	2.9	24	72	18	65	24	8	0	67	1.19
53672716--53672761	23	2.1	22	92	8	76	30	6	4	58	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53673197--53673238	19	2.2	20	86	4	59	33	7	11	47	1.68
53684928--53685877	44	21.8	44	71	13	461	28	20	24	26	1.99
53685012--53685302	133	2.2	133	91	0	456	29	20	24	25	1.99
53684914--53685884	349	2.8	350	90	1	1498	28	20	24	26	1.99
53686744--53686785	19	2.2	20	82	4	50	30	7	11	50	1.66
53688134--53688197	18	3.7	18	70	8	60	59	3	1	35	1.23
53689730--53690203	50	9.5	50	69	4	319	24	23	21	30	1.99
53689646--53690252	100	6.1	100	87	0	788	25	23	20	29	1.99
53690342--53690448	50	2.1	48	77	9	106	24	23	24	28	2.00
53690480--53690615	44	3.1	44	69	4	130	26	29	19	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207