genome.fa.s19.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  141  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43206602--43206725	40	3.1	40	78	2	124	25	32	14	27	1.95
43208319--43208435	35	3.3	35	82	1	135	41	29	10	17	1.83
43215749--43215910	35	4.6	35	83	5	184	41	30	9	17	1.81
43235888--43236164	44	6.1	44	73	12	191	33	21	19	24	1.97
43235890--43236159	142	1.9	142	85	3	373	34	21	18	25	1.96
43237902--43237943	15	2.7	15	88	7	57	40	4	0	54	1.21
43239283--43239312	14	2.2	14	94	5	53	50	0	6	43	1.28
43240831--43241209	40	9.6	40	88	3	484	27	28	19	24	1.99
43248886--43249186	40	7.6	40	83	11	302	26	27	20	24	1.99
43248886--43249186	80	3.8	78	86	5	349	26	27	20	24	1.99
43248923--43249186	120	2.2	117	86	5	361	26	28	20	24	1.99
43251395--43251570	40	4.4	40	86	0	210	23	31	16	28	1.96
43251449--43251513	20	3.2	20	68	8	60	20	35	12	32	1.89
43253302--43253326	12	2.1	12	100	0	50	0	24	0	76	0.80
43253358--43253398	20	2.0	20	90	0	64	21	24	26	26	2.00
43254702--43254736	4	9.0	4	87	6	54	74	0	0	25	0.82
43256625--43256814	94	2.0	94	94	0	335	32	10	20	37	1.86
43258693--43258952	129	2.0	126	83	7	321	26	18	28	25	1.98
43261052--43261121	20	3.5	20	66	19	56	47	5	4	42	1.47
43264583--43264680	43	2.3	43	90	0	160	30	32	16	20	1.94
43270471--43270782	50	5.9	50	76	13	273	20	31	20	26	1.98
43270605--43270644	19	2.1	19	100	0	80	17	42	15	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43270555--43270694	69	2.0	69	98	0	271	20	36	19	24	1.95
43270508--43270743	119	2.0	119	91	0	382	19	33	21	26	1.97
43270471--43270782	169	1.8	169	88	0	480	20	31	20	26	1.98
43270837--43270915	42	1.9	41	84	2	104	27	22	20	29	1.98
43292101--43292363	40	6.6	40	85	3	298	26	28	20	24	1.99
43294699--43294858	53	3.0	53	87	0	221	35	13	25	26	1.93
43295103--43295178	32	2.4	32	86	2	100	26	5	31	36	1.79
43303558--43303585	12	2.3	12	100	0	56	39	21	0	39	1.54
43304403--43304463	25	2.4	25	81	5	70	40	0	1	57	1.08
43312160--43312205	21	2.3	20	78	14	51	30	6	17	45	1.73
43316409--43316492	39	2.2	39	93	0	141	30	23	16	28	1.96
43334787--43334857	32	2.2	33	85	7	92	21	35	25	18	1.95
43336814--43337007	50	3.9	50	88	0	271	22	29	22	25	1.99
43338893--43338949	29	2.0	29	82	0	69	40	5	15	38	1.70
43342730--43342758	7	4.3	7	95	4	51	27	0	10	62	1.28
43342730--43342764	14	2.5	13	86	13	52	31	0	8	60	1.27
43344420--43344461	19	2.2	20	82	4	50	28	7	14	50	1.69
43350442--43351016	44	13.1	44	75	8	422	28	16	26	29	1.97
43350442--43350973	265	2.0	260	90	3	825	27	15	26	29	1.96
43350996--43351277	88	3.2	88	89	0	429	28	27	24	19	1.98
43351288--43351453	44	3.8	44	83	1	217	27	17	26	28	1.98
43351424--43351586	88	1.9	88	82	2	211	30	22	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43352106--43352392	44	6.6	43	73	14	232	29	21	21	27	1.99
43352099--43352567	217	2.2	215	89	2	697	29	20	23	26	1.99
43352236--43352431	89	2.2	88	81	6	218	30	21	21	26	1.98
43352106--43352430	44	7.5	44	75	11	181	30	21	21	27	1.98
43364066--43364103	19	2.0	19	89	0	58	39	15	7	36	1.77
43365031--43365370	50	6.8	50	84	2	380	22	30	20	27	1.98
43365709--43365765	30	1.9	30	82	10	73	31	22	7	38	1.81
43367508--43367746	122	2.0	122	100	0	478	33	10	10	44	1.75
43367924--43367965	13	2.9	14	80	13	50	54	0	0	45	0.99
43367928--43367964	16	2.3	16	86	13	58	59	0	0	40	0.97
43369853--43369975	43	2.9	43	87	0	165	29	30	19	21	1.97
43369852--43370005	43	3.6	43	81	6	152	29	27	18	24	1.98
43372093--43372169	40	1.9	40	84	5	102	49	11	6	32	1.65
43372245--43372432	86	2.2	85	86	2	268	42	16	7	34	1.76
43372535--43372697	86	1.9	87	83	1	211	47	16	5	30	1.69
43374630--43374675	21	2.2	21	84	7	58	23	2	47	26	1.63
43375420--43375449	7	4.3	7	91	0	51	36	50	0	13	1.42
43376505--43376731	41	5.5	41	86	6	316	29	26	22	21	1.99
43389239--43389335	25	3.8	25	82	8	79	23	25	22	27	2.00
43389264--43389335	25	2.9	25	95	0	126	23	25	23	27	2.00
43400552--43400603	4	12.5	4	81	6	59	25	7	1	65	1.30
43400554--43400613	12	4.8	12	80	12	59	25	10	1	63	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43400532--43400620	37	2.4	35	80	12	90	23	11	2	62	1.39
43407187--43407490	88	3.5	88	93	1	513	26	22	26	25	2.00
43409493--43409544	4	12.5	4	81	6	59	25	7	1	65	1.30
43409495--43409554	12	4.8	12	80	12	59	25	10	1	63	1.35
43409473--43409561	37	2.4	35	80	12	90	23	11	2	62	1.39
43416130--43416592	69	6.7	69	77	3	252	36	19	19	24	1.94
43416131--43416592	138	3.4	137	79	1	361	37	19	19	24	1.94
43416607--43416812	70	3.0	70	73	12	208	37	23	19	18	1.94
43424983--43425070	25	3.5	25	78	3	88	31	18	22	27	1.97
43425120--43425189	25	2.8	25	80	4	79	32	20	25	21	1.97
43434236--43434266	5	6.2	5	100	0	62	0	19	0	80	0.71
43436896--43437071	59	3.0	58	69	20	150	41	2	5	51	1.36
43436971--43437022	14	3.6	14	75	14	52	44	1	0	53	1.11
43436905--43437121	117	1.8	120	91	5	361	41	1	5	51	1.34
43437085--43437129	16	2.8	16	83	16	65	44	0	0	55	0.99
43437281--43437329	16	3.1	16	93	0	80	34	36	0	28	1.58
43440624--43440665	18	2.3	18	84	12	50	42	4	0	52	1.22
43444735--43444896	41	3.9	41	90	0	234	35	16	28	20	1.94
43450863--43450906	23	1.9	23	85	0	61	54	9	9	27	1.62
43452114--43452164	25	2.0	25	85	7	68	39	1	13	45	1.55
43453576--43453707	28	4.7	28	82	3	149	40	9	23	25	1.85
43453576--43453704	56	2.3	56	86	2	170	41	10	22	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43455472--43455531	25	2.4	25	80	5	68	26	13	21	38	1.90
43463456--43463487	16	2.0	16	93	0	55	18	34	25	21	1.96
43470472--43470527	18	3.2	18	75	12	53	48	5	10	35	1.61
43473202--43473280	37	2.1	37	90	0	122	25	31	18	24	1.98
43473399--43473715	47	6.7	47	93	0	501	28	30	9	31	1.88
43475679--43475703	13	1.9	13	100	0	50	36	16	16	32	1.90
43476782--43477567	39	20.5	39	75	5	353	39	15	23	21	1.92
43476807--43477567	78	9.9	78	77	5	510	39	15	23	21	1.91
43476806--43477022	109	2.0	109	84	1	283	41	15	23	19	1.90
43483612--43483640	13	2.1	14	93	6	51	75	0	10	13	1.04
43483629--43483663	17	2.1	17	94	0	61	77	5	14	2	1.07
43484698--43484852	23	7.0	23	83	5	178	18	21	20	39	1.93
43487558--43487600	21	2.0	21	81	4	50	39	6	16	37	1.75
43492432--43492507	23	3.4	23	85	10	113	21	23	21	34	1.97
43496792--43496986	57	3.4	57	88	2	275	36	11	24	28	1.90
43496792--43496986	86	2.3	86	90	1	302	36	11	24	28	1.90
43496792--43496986	29	6.8	29	89	2	286	36	11	24	28	1.90
43502085--43502109	10	2.5	10	100	0	50	28	8	0	64	1.22
43502411--43502454	23	1.9	22	82	17	54	36	25	0	38	1.56
43502598--43502733	50	2.7	52	86	5	206	31	27	15	25	1.96
43504466--43504493	13	2.2	13	100	0	56	14	35	17	32	1.90
43508898--43508937	9	4.4	9	87	0	62	42	20	10	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43509040--43509093	18	2.9	18	77	2	63	14	1	42	40	1.57
43515283--43515342	30	2.0	31	83	3	77	41	0	38	20	1.52
43515531--43515567	9	4.1	9	92	0	65	29	10	13	45	1.77
43517085--43517122	19	2.0	19	100	0	76	31	0	5	63	1.17
43517234--43517279	14	3.2	15	75	9	51	65	8	0	26	1.21
43521565--43521755	50	3.8	50	78	7	181	28	27	16	26	1.97
43525039--43525084	24	1.9	24	86	0	65	47	0	2	50	1.13
43530850--43530891	21	2.1	20	82	8	50	40	7	0	52	1.29
43531446--43531643	20	10.6	19	68	21	98	58	1	8	32	1.34
43531445--43531500	10	5.4	10	79	14	53	60	0	5	33	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207