genome.fa.s19.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  194  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58388517--58388563	20	2.2	22	85	11	62	48	0	21	29	1.50
58388868--58388941	30	2.6	27	79	10	85	10	20	9	59	1.58
58391038--58391072	3	11.7	3	100	0	70	31	0	34	34	1.58
58394904--58394942	12	3.2	12	85	0	51	17	20	7	53	1.68
58394903--58394941	20	2.0	20	100	0	78	15	20	7	56	1.63
58395196--58395338	50	2.9	50	81	0	169	23	28	19	27	1.98
58396967--58397047	29	2.8	30	80	16	82	62	1	6	29	1.27
58398091--58398128	18	2.1	18	90	0	58	39	5	39	15	1.70
58408701--58408765	32	2.0	32	100	0	130	38	33	6	21	1.78
58420601--58420671	10	7.5	10	78	13	53	63	5	0	30	1.17
58420600--58420653	19	3.1	17	82	12	56	61	5	0	33	1.19
58420652--58420693	11	4.3	10	79	14	52	69	9	0	21	1.17
58420815--58420853	20	2.0	20	85	10	53	56	0	5	38	1.22
58423196--58423317	41	2.8	45	81	9	146	23	17	29	29	1.97
58428281--58428327	13	3.5	13	80	13	60	17	12	14	55	1.70
58434112--58434147	17	2.1	17	100	0	72	16	25	33	25	1.96
58434129--58434603	188	2.5	187	88	3	684	35	11	34	18	1.87
58435270--58435466	39	5.0	39	84	0	223	35	6	35	22	1.81
58439305--58439674	87	4.3	87	74	11	242	27	21	20	31	1.98
58439345--58439674	44	7.6	43	73	11	234	26	21	21	30	1.98
58458724--58458777	19	2.8	18	81	10	63	59	0	5	35	1.21
58458724--58458766	20	2.2	20	87	8	61	62	0	6	30	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58459390--58459426	19	1.9	19	89	10	58	56	24	10	8	1.60
58463259--58463298	21	2.1	18	86	13	53	47	5	7	40	1.54
58464244--58464318	30	2.6	30	79	14	77	56	1	6	36	1.34
58465525--58465574	26	1.9	26	83	0	64	62	4	0	34	1.14
58479032--58479217	72	2.5	74	77	13	213	41	16	9	32	1.80
58485680--58485728	21	2.3	21	72	27	50	44	0	2	53	1.12
58494404--58494458	23	2.4	23	80	14	60	29	3	1	65	1.20
58498666--58498905	120	2.0	120	100	0	480	45	14	13	27	1.82
58499378--58499465	43	2.0	43	95	0	158	42	10	22	25	1.85
58501254--58501319	18	3.7	18	82	8	80	10	42	9	37	1.71
58503401--58503438	14	2.6	14	84	15	51	68	0	7	23	1.16
58503960--58504029	31	2.4	29	81	13	81	50	7	4	38	1.50
58511413--58511447	17	2.1	17	94	0	61	31	5	14	48	1.67
58511759--58511815	21	2.7	21	73	10	62	10	15	0	73	1.09
58517497--58517554	20	2.9	21	76	7	57	53	5	1	39	1.33
58524232--58524313	34	2.3	34	83	6	92	36	3	4	54	1.39
58528341--58528382	20	2.1	20	86	8	59	30	2	14	52	1.54
58530474--58530526	21	2.5	21	78	6	63	64	24	5	5	1.38
58532442--58532468	13	2.1	13	100	0	54	59	0	14	25	1.36
58533068--58533112	23	1.9	24	81	4	56	37	6	2	53	1.40
58545715--58545815	51	2.0	51	90	0	157	20	12	44	21	1.85
58545747--58545883	72	1.9	72	92	0	229	18	12	47	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58545747--58545918	72	2.4	72	84	1	193	16	11	50	22	1.77
58555830--58555891	31	2.0	31	100	0	124	32	9	16	41	1.80
58562010--58562071	31	2.0	31	100	0	124	32	9	16	41	1.80
58564945--58564974	15	2.1	15	93	6	53	26	0	6	66	1.16
58576685--58576796	61	1.9	58	85	5	152	41	3	3	50	1.37
58581223--58581286	35	2.0	32	82	17	80	20	9	0	70	1.14
58582259--58582351	18	5.2	18	83	5	125	32	21	12	33	1.91
58582255--58582351	36	2.7	36	91	0	149	31	21	13	32	1.92
58593524--58593566	22	2.0	22	85	0	59	58	0	2	39	1.11
58594268--58594306	19	2.1	19	86	13	55	61	15	7	15	1.55
58594719--58594894	88	2.0	88	100	0	352	29	10	28	31	1.90
58603296--58603423	45	3.2	39	83	9	125	20	21	20	38	1.94
58603323--58603467	45	3.2	45	87	0	191	22	17	17	42	1.90
58604436--58604469	4	8.5	4	86	0	50	67	0	5	26	1.13
58609764--58609792	15	1.9	15	100	0	58	27	0	6	65	1.18
58610113--58610164	27	2.0	25	82	14	61	32	5	3	57	1.40
58611076--58611100	13	1.9	13	100	0	50	88	0	0	12	0.53
58617842--58617909	34	2.0	34	91	0	109	17	23	27	30	1.97
58617876--58617999	50	2.5	50	95	0	230	20	29	21	27	1.98
58618094--58618123	13	2.3	13	94	0	51	50	13	3	33	1.58
58618337--58618393	30	1.9	29	89	3	87	29	26	0	43	1.55
58625525--58625549	3	8.3	3	100	0	50	68	0	32	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58626893--58627391	250	2.0	248	98	0	971	36	13	6	43	1.68
58627439--58627507	18	3.8	18	75	17	63	59	5	2	31	1.36
58630030--58630060	7	4.4	7	100	0	62	74	0	0	25	0.82
58635581--58635691	40	2.8	41	84	4	154	23	17	27	31	1.97
58636018--58636067	22	2.3	21	79	3	55	26	0	34	40	1.56
58636025--58636056	15	2.1	15	94	0	55	25	0	34	40	1.56
58636083--58636126	21	2.0	22	86	4	63	22	0	45	31	1.53
58638631--58638662	14	2.3	14	94	0	55	40	6	12	40	1.68
58640952--58641118	43	3.9	43	84	0	217	26	12	27	32	1.93
58643840--58643866	2	13.5	2	100	0	54	51	0	0	48	1.00
58644192--58644373	41	4.4	41	96	0	319	25	22	27	24	2.00
58645579--58645620	18	2.3	18	87	0	57	11	7	0	80	0.88
58646399--58646446	19	2.5	20	76	6	55	27	6	0	66	1.15
58646421--58646499	3	25.7	3	74	14	63	31	6	2	59	1.36
58646610--58646659	23	2.1	24	88	3	75	46	2	0	52	1.12
58646617--58646676	29	2.0	29	84	9	77	46	5	0	48	1.24
58646617--58646676	31	2.0	28	84	9	75	46	5	0	48	1.24
58646614--58646697	31	2.7	31	69	12	73	45	5	0	48	1.27
58646716--58646759	22	1.9	22	86	9	61	43	4	2	50	1.35
58652590--58652632	19	2.3	19	80	8	52	37	0	13	48	1.43
58656616--58656653	3	12.7	3	100	0	76	65	0	0	34	0.93
58664765--58664805	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58672088--58672129	12	3.5	12	78	21	52	69	2	0	28	1.01
58672087--58672149	29	2.2	29	85	5	83	68	4	0	26	1.10
58674866--58674913	17	2.8	17	80	3	60	66	0	0	33	0.92
58675806--58675861	21	2.8	19	89	10	94	37	10	16	35	1.83
58675806--58675884	19	3.7	22	80	14	78	36	8	16	37	1.80
58678867--58678892	5	5.2	5	100	0	52	38	19	19	23	1.93
58690266--58690309	3	14.7	3	100	0	88	65	0	0	34	0.93
58690347--58690394	13	3.7	13	78	10	62	31	6	25	37	1.81
58699070--58699213	48	3.0	48	80	10	161	40	6	29	22	1.79
58700708--58700747	17	2.4	17	86	0	53	27	2	2	67	1.16
58701020--58701094	29	2.6	29	89	0	114	52	22	16	9	1.72
58702714--58702753	6	6.7	6	100	0	80	85	0	0	15	0.61
58704186--58704212	14	1.9	14	100	0	54	85	0	7	7	0.75
58704554--58704611	29	2.0	29	96	0	107	31	25	13	29	1.94
58709076--58709110	3	11.7	3	100	0	70	65	0	0	34	0.93
58709201--58709233	12	2.8	12	82	17	50	60	0	0	39	0.97
58710420--58710447	14	2.0	14	100	0	56	14	0	21	64	1.29
58710858--58710903	18	2.5	20	80	20	64	71	0	13	15	1.14
58710844--58710905	25	2.5	22	76	20	61	74	0	11	14	1.08
58712101--58712818	46	15.6	46	90	1	1035	28	16	26	28	1.97
58712803--58713117	88	3.6	88	94	0	540	28	25	22	23	1.99
58712807--58713117	44	7.1	43	67	15	188	28	25	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58713415--58713442	14	2.0	14	100	0	56	64	21	0	14	1.29
58714630--58714662	12	2.8	12	82	17	50	39	0	0	60	0.97
58714755--58714801	3	15.7	3	100	0	94	34	0	0	65	0.93
58716829--58716858	6	4.8	6	95	4	51	86	0	0	13	0.57
58719825--58719855	14	2.2	14	94	0	53	38	16	12	32	1.86
58720196--58720271	32	2.4	32	86	0	98	23	23	5	47	1.72
58722579--58722616	19	2.0	19	89	0	58	36	21	5	36	1.76
58726999--58727084	36	2.3	36	80	6	91	37	15	9	38	1.79
58727094--58727155	32	1.9	32	86	0	88	24	24	4	46	1.71
58727094--58727169	32	2.4	32	78	12	84	26	25	3	44	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207