genome.fa.s19.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  143  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43884328--43884400	30	2.4	30	82	8	103	24	24	21	28	1.99
43890490--43890537	24	2.0	24	83	0	60	47	2	2	47	1.25
43895591--43895640	21	2.4	20	83	6	55	36	4	2	58	1.29
43895710--43895747	20	1.9	20	84	10	51	34	5	2	57	1.35
43897159--43897184	4	6.5	4	100	0	52	73	0	0	26	0.84
43910266--43910344	27	2.9	27	86	0	104	30	22	15	31	1.95
43924164--43924217	27	2.0	27	96	0	99	20	33	24	22	1.97
43928328--43928366	20	2.0	20	100	0	78	48	10	20	20	1.78
43942937--43942995	30	2.0	30	82	0	73	27	23	11	37	1.90
43942983--43943055	30	2.4	30	93	0	119	19	28	13	38	1.90
43942983--43943204	60	3.7	59	72	12	177	24	26	13	34	1.93
43943011--43943204	30	6.5	30	74	6	135	25	27	13	34	1.93
43943163--43943229	29	2.3	29	84	7	82	23	31	10	34	1.89
43950765--43950922	30	5.3	29	71	13	108	25	25	13	34	1.93
43953671--43953765	48	2.0	48	93	0	163	37	13	10	37	1.80
43956439--43956495	23	2.5	23	83	8	64	70	1	5	22	1.17
43956625--43956671	17	2.6	18	75	18	53	72	0	2	25	0.96
43968305--43968329	3	8.3	3	100	0	50	64	0	0	36	0.94
43976231--43976341	55	2.0	57	83	5	145	43	9	4	43	1.56
43983838--43983880	9	4.7	9	88	11	61	65	2	0	32	1.06
43983838--43983880	19	2.3	19	88	11	63	65	2	0	32	1.06
43984808--43984832	12	2.1	12	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43988936--43988965	15	2.0	15	93	0	51	16	20	36	26	1.93
44008110--44008160	26	2.0	26	92	0	84	49	5	1	43	1.38
44011053--44011124	20	3.7	20	85	7	85	38	0	6	54	1.28
44013788--44013834	18	2.7	18	81	15	62	36	4	0	59	1.17
44013801--44013846	18	2.5	19	83	13	53	39	4	0	56	1.19
44020353--44020897	87	6.3	87	92	1	871	29	23	22	25	1.99
44020353--44020897	260	2.1	258	91	2	849	29	23	22	25	1.99
44024459--44024508	20	2.5	20	87	3	75	12	2	24	62	1.40
44025145--44025214	20	3.4	19	75	12	59	7	18	0	74	1.04
44026467--44026505	19	2.0	20	85	5	53	43	5	7	43	1.55
44027501--44027636	41	3.4	41	82	5	147	26	17	22	33	1.96
44028983--44029053	36	2.0	36	100	0	142	30	11	16	40	1.84
44029853--44029933	20	4.0	20	84	9	92	41	22	24	11	1.86
44037895--44037927	10	3.3	10	91	8	50	15	9	0	75	1.03
44041006--44041992	492	2.0	491	94	0	1724	39	21	12	27	1.88
44061254--44061278	13	1.9	13	100	0	50	44	16	0	40	1.47
44063559--44064104	110	5.0	110	89	0	770	32	21	14	31	1.93
44065766--44065821	21	2.7	21	78	10	62	78	0	16	5	0.92
44066172--44066205	18	1.9	18	88	5	52	8	2	2	85	0.80
44069254--44069293	22	1.9	20	85	10	53	52	0	7	40	1.30
44071040--44071143	41	2.5	41	95	0	181	20	28	29	21	1.98
44071662--44071691	16	1.9	16	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44075831--44075896	30	2.2	30	86	0	87	19	22	33	24	1.97
44090595--44090629	17	2.0	18	88	5	54	17	42	25	14	1.86
44092696--44092753	27	2.1	27	100	0	116	29	18	6	44	1.76
44093904--44094038	46	2.9	46	78	0	153	34	24	18	22	1.96
44098776--44098860	37	2.2	39	83	12	120	43	7	8	41	1.62
44099332--44099385	21	2.6	21	84	0	72	44	18	22	14	1.86
44102743--44102779	17	2.2	17	90	9	58	51	18	0	29	1.47
44104858--44104897	19	2.2	19	86	13	57	12	17	10	60	1.59
44113715--44113748	13	2.6	14	90	9	54	0	8	0	91	0.43
44114875--44114939	22	3.0	22	86	6	71	24	32	0	43	1.55
44114889--44114939	22	2.3	22	96	0	93	27	31	0	41	1.56
44114994--44115060	31	2.2	31	94	2	118	37	0	0	62	0.95
44116811--44116845	18	1.9	18	88	0	52	25	34	8	31	1.86
44117245--44117293	25	1.9	26	87	4	73	44	2	16	36	1.59
44117334--44117397	18	3.7	18	68	19	55	46	26	1	25	1.61
44117364--44117802	29	14.8	29	87	6	603	45	31	0	22	1.55
44117418--44117496	6	13.7	6	75	10	51	41	39	0	18	1.51
44117804--44118128	56	5.9	55	85	6	469	36	11	5	46	1.65
44117808--44118137	110	3.0	110	95	1	597	35	11	5	46	1.64
44118120--44118144	10	2.5	10	100	0	50	44	8	0	48	1.32
44121252--44121605	125	2.8	126	92	3	606	32	22	15	29	1.95
44123598--44123678	21	4.1	19	69	15	58	65	0	1	33	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44123684--44123738	18	2.8	20	71	20	53	70	1	3	23	1.12
44123911--44123991	19	4.3	18	72	21	60	24	3	4	66	1.28
44123922--44123991	19	3.7	19	72	9	63	25	4	4	65	1.29
44123922--44124003	38	2.1	39	84	2	103	25	4	3	65	1.29
44123952--44124024	19	3.7	19	77	12	76	24	4	2	68	1.20
44123977--44124064	10	8.9	10	74	10	65	31	1	0	67	0.99
44128648--44128700	21	2.5	21	84	6	63	32	3	5	58	1.39
44131493--44131616	43	2.9	43	79	5	144	24	26	22	26	2.00
44131555--44131681	65	2.0	65	88	0	191	25	30	18	25	1.98
44131618--44131739	43	2.8	42	82	7	131	28	27	15	27	1.96
44131517--44131724	108	1.9	108	81	3	249	26	27	19	26	1.99
44136612--44136653	6	6.8	6	82	15	50	19	2	0	78	0.86
44137456--44137487	3	10.7	3	100	0	64	34	0	0	65	0.93
44139886--44139925	19	2.0	20	85	4	55	27	2	45	25	1.66
44141995--44142066	23	3.2	23	88	4	119	30	25	20	23	1.99
44141999--44142065	22	3.0	23	88	4	109	31	26	20	20	1.98
44142153--44142181	8	3.6	8	100	0	58	34	27	13	24	1.93
44143950--44144145	50	3.9	50	88	0	275	20	31	22	25	1.98
44146257--44146284	13	2.2	13	100	0	56	42	50	0	7	1.30
44146313--44146351	20	1.9	20	89	5	60	38	51	0	10	1.36
44146323--44146361	20	2.0	20	85	5	53	38	43	0	17	1.50
44146635--44146682	21	2.3	21	85	10	71	39	39	0	20	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44146632--44146686	28	2.0	28	85	0	74	40	40	0	20	1.52
44147084--44147402	41	7.8	41	79	3	284	28	26	22	22	1.99
44147185--44147382	83	2.4	83	82	0	227	28	23	22	25	1.99
44148688--44148712	3	8.3	3	100	0	50	36	0	32	32	1.58
44149857--44149948	45	2.0	45	100	0	184	27	19	13	40	1.88
44150178--44150431	86	3.0	86	98	0	490	31	22	14	32	1.94
44152341--44152390	18	2.8	18	78	0	64	10	38	4	48	1.56
44161230--44161265	18	2.0	18	100	0	72	27	27	5	38	1.79
44161611--44161649	18	2.2	18	100	0	78	25	5	15	53	1.62
44161855--44161901	21	2.3	20	82	7	60	40	4	2	53	1.32
44161869--44161909	21	2.0	22	90	9	68	34	4	7	53	1.50
44162189--44162230	16	2.6	17	81	7	52	28	21	0	50	1.49
44162181--44162231	16	3.2	16	72	10	50	29	19	1	49	1.60
44162458--44162491	17	1.9	18	88	5	52	47	2	11	38	1.55
44166186--44166224	20	2.0	20	89	0	60	30	12	12	43	1.81
44180943--44181122	51	3.6	50	81	6	177	25	16	28	30	1.96
44181131--44181218	46	2.0	44	82	8	106	25	17	22	35	1.95
44181325--44181397	37	1.9	38	86	2	103	43	2	20	32	1.66
44186392--44186542	50	3.0	51	77	1	169	28	16	25	29	1.97
44193756--44193815	29	2.1	29	96	0	111	23	35	6	35	1.81
44196221--44196372	27	5.6	27	93	3	241	26	13	28	30	1.94
44196221--44196372	55	2.8	55	94	0	259	26	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44200531--44200650	28	4.2	28	74	5	98	36	20	19	24	1.95
44200575--44200646	29	2.5	27	78	10	72	43	18	19	19	1.89
44207568--44207594	13	2.1	13	100	0	54	33	14	7	44	1.73
44228201--44228255	17	3.0	18	80	20	69	45	1	3	49	1.30
44240804--44240835	13	2.3	15	89	10	50	37	15	6	40	1.73
44265522--44265546	8	3.1	8	100	0	50	64	0	0	36	0.94
44268097--44268139	19	2.1	20	83	12	52	25	0	2	72	0.97
44280017--44280068	24	2.2	24	89	0	77	34	3	7	53	1.48
44283126--44283192	3	22.3	3	100	0	134	0	32	0	67	0.91
44294764--44294931	46	3.7	45	78	7	142	27	19	20	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207