genome.fa.s19.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  98  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29155949--29156079	20	6.6	20	69	11	83	39	6	10	43	1.64
29157489--29157701	75	2.8	76	93	2	365	30	27	19	21	1.98
29157676--29157753	27	2.9	27	94	0	138	29	30	23	16	1.96
29160389--29160462	33	2.2	33	83	4	87	17	17	16	48	1.81
29161907--29162132	30	7.6	30	77	10	230	24	22	13	39	1.90
29161907--29162141	60	3.9	60	82	7	289	25	23	13	37	1.91
29161907--29162133	89	2.5	90	79	8	257	24	22	13	39	1.90
29166058--29166168	51	2.2	52	83	8	147	44	5	20	29	1.74
29168073--29168102	7	4.3	7	91	0	51	70	0	30	0	0.88
29170965--29171011	22	2.1	22	100	0	94	38	21	17	23	1.93
29177282--29177363	42	2.0	42	95	0	146	30	4	13	51	1.62
29183474--29183518	22	2.0	22	83	8	56	40	4	0	55	1.20
29191738--29191798	25	2.4	25	81	5	70	39	1	1	57	1.18
29197347--29197399	26	2.0	26	100	0	106	39	11	18	30	1.86
29198122--29198161	21	1.9	21	84	0	53	22	25	20	32	1.98
29212821--29212914	47	2.0	47	93	0	161	26	19	19	35	1.95
29215557--29215611	25	2.2	25	86	0	74	32	14	12	40	1.84
29220544--29220602	29	2.0	31	83	6	77	32	6	5	55	1.48
29222101--29222286	96	1.9	96	81	4	223	19	15	31	33	1.93
29227954--29228012	20	3.0	20	76	0	64	23	22	15	38	1.92
29233276--29233306	15	2.1	15	93	0	53	51	12	12	22	1.74
29250352--29250498	75	2.0	75	93	2	251	29	13	8	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29262224--29262507	138	2.1	138	91	1	453	44	6	8	40	1.60
29263221--29263352	67	2.0	67	96	0	246	31	19	8	40	1.81
29265161--29265190	15	1.9	16	93	6	53	60	0	0	40	0.97
29266918--29266959	22	1.9	21	85	9	57	59	4	2	33	1.31
29268623--29269828	174	6.9	174	92	1	1889	28	21	18	30	1.97
29269407--29269645	130	1.8	129	80	6	286	29	21	18	30	1.97
29268699--29269998	44	29.8	44	68	14	493	28	21	18	31	1.97
29269615--29269957	128	2.6	129	85	3	456	29	21	18	30	1.97
29270045--29270390	87	4.0	87	85	1	388	27	24	19	29	1.98
29271633--29271685	7	8.0	7	87	8	76	15	16	0	67	1.23
29271636--29271684	6	7.7	6	86	8	62	14	16	0	69	1.19
29271633--29271684	13	4.0	13	85	9	79	15	17	0	67	1.24
29271633--29271685	20	2.7	20	94	2	90	15	16	0	67	1.23
29272567--29272606	6	6.7	6	91	0	53	15	7	10	67	1.41
29276258--29276299	22	1.9	21	85	9	57	59	4	2	33	1.31
29278012--29278096	42	2.0	44	88	4	129	49	12	7	30	1.68
29279865--29279963	41	2.4	41	85	5	130	51	6	22	20	1.69
29287873--29287910	16	2.5	16	87	8	53	31	5	18	44	1.72
29294266--29294635	185	2.0	185	89	0	569	26	21	17	34	1.95
29297231--29297273	19	2.3	19	88	4	61	39	2	4	53	1.34
29298228--29298258	11	2.8	11	95	0	53	70	3	0	25	1.02
29300379--29300408	9	3.2	9	95	4	51	56	3	0	40	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29303199--29303248	21	2.4	21	96	0	91	42	2	50	6	1.38
29305165--29305205	16	2.5	17	76	15	50	48	4	0	46	1.23
29313072--29313170	28	3.5	28	93	4	155	40	11	0	48	1.39
29313212--29313295	27	3.1	27	93	1	143	25	30	27	16	1.97
29313794--29313854	19	3.3	18	76	4	59	42	8	0	49	1.32
29313802--29313854	18	2.9	18	75	11	54	41	9	0	49	1.35
29314345--29314428	27	3.1	27	96	1	152	16	27	30	25	1.97
29314474--29314553	27	2.9	28	84	15	112	51	0	12	36	1.40
29314477--29314575	29	3.5	29	93	5	159	47	0	14	38	1.44
29318218--29318256	14	2.7	14	84	4	51	64	5	7	23	1.40
29318224--29318262	13	3.0	13	88	7	53	61	5	7	25	1.44
29334481--29334509	6	4.8	6	100	0	58	34	0	13	51	1.42
29336125--29336162	19	2.0	19	100	0	76	21	15	21	42	1.89
29342590--29342625	18	2.0	18	89	10	56	13	0	8	77	0.98
29343105--29343652	44	12.0	44	70	12	205	27	20	19	32	1.97
29343239--29343433	52	3.9	51	75	11	163	27	18	19	34	1.96
29343214--29343433	95	2.3	96	84	0	289	27	19	20	33	1.96
29343486--29343698	44	4.8	43	78	8	189	29	21	18	30	1.97
29343495--29343701	87	2.3	87	85	5	265	29	21	19	29	1.98
29343628--29344062	181	2.4	182	83	1	505	31	20	17	30	1.95
29343755--29344061	45	6.8	45	70	12	175	29	22	17	30	1.97
29344977--29345027	23	2.3	22	79	3	57	0	17	3	78	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29344989--29345035	16	2.8	16	87	6	67	0	10	6	82	0.82
29344988--29345033	23	2.0	23	87	8	67	0	13	6	80	0.89
29345684--29345723	20	2.0	20	100	0	80	20	5	30	45	1.72
29349413--29349446	16	2.1	17	88	5	52	8	17	11	61	1.54
29355420--29355457	14	2.6	15	84	16	53	57	2	39	0	1.12
29356676--29356714	20	1.9	21	89	5	62	43	0	12	43	1.42
29376928--29376975	20	2.4	20	96	0	87	37	0	41	20	1.53
29379512--29379538	10	2.7	10	100	0	54	29	18	22	29	1.97
29382783--29382836	22	2.5	22	76	8	58	64	1	29	3	1.21
29386165--29386211	6	7.8	6	97	0	85	0	31	31	36	1.58
29387833--29387874	16	2.7	15	85	7	57	57	2	2	38	1.25
29387911--29387993	38	2.2	39	95	2	150	38	2	3	55	1.30
29388164--29388324	8	19.4	8	63	18	53	51	14	1	32	1.51
29388211--29388567	19	19.5	19	69	21	212	54	13	1	31	1.47
29388190--29388414	27	9.1	26	78	19	259	53	13	0	31	1.46
29388137--29388414	49	5.7	49	88	3	413	53	14	1	30	1.48
29388363--29388582	120	1.8	121	89	6	347	53	14	0	31	1.47
29388401--29388565	21	8.1	21	73	17	134	55	13	1	30	1.46
29388634--29388659	12	2.2	12	100	0	52	46	15	0	38	1.46
29388902--29388966	27	2.4	27	97	0	121	13	35	21	29	1.92
29391257--29391319	31	2.1	30	93	3	108	34	17	9	38	1.82
29393781--29393887	50	2.1	50	84	3	144	20	31	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29401079--29401116	20	1.9	20	88	0	58	34	5	5	55	1.45
29406426--29406465	20	2.0	20	100	0	80	25	20	25	30	1.99
29416139--29416245	50	2.1	50	81	6	128	27	22	29	20	1.98
29418736--29418778	18	2.3	18	84	8	50	39	6	30	23	1.81
29421365--29421435	33	2.2	33	84	0	88	49	16	18	15	1.80
29424600--29424656	20	2.8	20	86	0	78	12	29	21	36	1.90
29429691--29429741	23	2.3	22	83	10	68	35	5	17	41	1.74
29438424--29438647	33	6.4	33	67	23	127	17	19	29	34	1.94
29438423--29438596	76	2.3	75	92	1	285	18	19	28	33	1.95
29443813--29443848	17	2.1	17	100	0	72	11	36	30	22	1.89
29443824--29443887	30	2.1	30	85	5	85	26	34	23	15	1.95
29444012--29444128	54	2.2	54	81	9	150	26	27	19	26	1.99
29451099--29451256	33	4.7	33	69	9	86	30	17	25	25	1.97
29451098--29451293	101	1.9	102	96	1	367	30	16	25	27	1.97
29451265--29451363	43	2.3	44	91	1	164	28	17	24	30	1.97
29456838--29456909	18	3.9	18	75	8	74	11	2	11	75	1.16
29458804--29458849	22	2.0	23	83	4	58	26	4	8	60	1.44
29460577--29460621	20	2.3	20	80	3	56	28	2	8	60	1.39
29463914--29463953	19	2.2	19	86	4	55	32	7	0	60	1.25
29468284--29468507	69	3.2	69	81	0	205	20	21	20	36	1.96
29472756--29472793	19	2.0	19	94	0	67	28	15	13	42	1.85
29476927--29476980	6	9.5	6	97	2	87	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29477739--29477791	21	2.5	21	72	6	54	66	3	5	24	1.31
29478057--29478108	6	8.7	6	91	0	68	38	48	9	3	1.54
29478112--29478142	14	2.2	14	94	0	53	38	38	6	16	1.74
29484676--29484722	16	2.9	16	78	15	51	46	2	4	46	1.34
29484947--29484983	19	2.0	18	89	5	56	51	2	0	45	1.15
29485037--29485075	5	7.8	5	100	0	78	61	0	38	0	0.96
29486079--29486121	20	2.2	20	91	0	68	39	4	11	44	1.62
29486383--29486454	27	2.7	26	82	6	90	40	6	16	36	1.76
29489045--29489069	6	4.2	6	100	0	50	16	16	0	68	1.22
29490616--29490655	11	3.5	12	83	10	57	55	0	2	42	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207