genome.fa.s19.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  115  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34547111--34549181	691	3.0	691	96	0	3703	34	18	19	27	1.95
34552454--34552495	23	2.0	22	86	13	61	14	19	2	64	1.39
34563725--34563966	50	4.8	49	77	6	173	23	26	21	28	1.99
34563725--34563919	50	3.9	50	80	2	187	22	27	22	28	1.99
34567228--34567272	11	4.0	11	88	5	72	75	8	0	15	1.03
34567231--34567275	12	3.8	12	94	5	83	77	6	0	15	0.96
34567231--34567274	23	1.9	23	100	0	88	79	6	0	13	0.92
34567313--34567352	16	2.6	16	96	4	73	62	5	12	20	1.48
34576563--34576597	15	2.3	15	95	0	61	25	20	25	28	1.99
34579956--34579984	13	2.1	14	93	6	51	58	13	0	27	1.36
34580033--34580071	20	1.9	21	89	5	62	33	15	28	23	1.95
34583447--34583502	20	2.9	18	80	19	60	17	5	7	69	1.31
34584849--34584877	13	2.1	14	93	6	51	58	13	0	27	1.36
34589969--34590015	21	2.2	22	84	3	60	27	8	12	51	1.69
34590596--34590638	19	2.3	18	84	11	52	72	9	2	16	1.21
34594665--34594717	25	2.1	25	89	0	79	35	16	22	24	1.95
34623399--34623462	30	2.1	30	85	0	83	25	29	25	20	1.99
34637422--34637606	44	4.2	44	67	15	130	31	20	21	26	1.98
34637278--34637677	132	3.0	132	93	0	649	30	20	24	25	1.98
34637690--34637803	45	2.6	45	80	4	115	24	21	27	27	1.99
34637735--34637834	44	2.2	44	84	7	121	25	25	24	26	2.00
34637849--34638010	50	3.2	50	75	0	144	33	22	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34637824--34638010	100	1.9	100	82	0	239	31	23	20	24	1.98
34640891--34641009	25	4.8	25	73	13	93	26	22	23	27	2.00
34640891--34641011	50	2.4	50	81	8	131	26	22	23	27	2.00
34642176--34642208	17	1.9	17	93	0	57	45	6	0	48	1.27
34649935--34649966	16	2.0	16	93	0	55	25	15	0	59	1.36
34650194--34650384	51	3.8	51	78	8	219	29	27	17	25	1.97
34650192--34650376	101	1.8	101	90	3	300	30	26	17	25	1.97
34650380--34650407	6	4.7	6	100	0	56	17	35	0	46	1.49
34653440--34653552	25	4.5	25	75	4	113	23	23	23	30	1.99
34653441--34653552	50	2.2	50	85	3	145	23	23	23	30	1.99
34653595--34653707	50	2.3	50	78	3	111	24	21	22	31	1.98
34653635--34653707	25	2.9	25	77	0	83	26	20	21	31	1.98
34653402--34653711	155	2.0	155	95	0	557	27	23	18	31	1.97
34653638--34653720	25	3.3	24	77	3	76	24	20	25	30	1.99
34655464--34655520	27	2.2	25	84	15	71	15	7	5	71	1.25
34658189--34658220	6	5.3	6	100	0	64	68	0	31	0	0.90
34671386--34671431	18	2.5	18	85	3	56	34	15	15	34	1.89
34671472--34671535	9	7.1	9	92	0	110	46	12	9	31	1.73
34680348--34680418	19	3.6	19	78	12	81	50	4	32	12	1.59
34680348--34680418	20	3.7	20	76	12	85	50	4	32	12	1.59
34680801--34680891	46	2.0	45	95	2	164	30	25	19	24	1.98
34681233--34681430	24	8.6	23	72	9	118	33	7	4	55	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34681462--34681520	24	2.4	23	77	22	59	35	1	3	59	1.24
34684255--34684360	53	2.0	53	100	0	212	30	13	11	45	1.78
34685217--34685271	22	2.5	22	77	14	58	69	10	7	12	1.37
34687492--34688250	44	17.6	44	72	10	405	30	19	21	28	1.97
34687479--34687821	129	2.7	129	82	3	404	30	21	21	26	1.98
34687746--34687990	129	1.9	129	80	6	282	31	20	19	28	1.97
34687578--34688257	173	3.9	172	84	4	816	31	18	21	28	1.97
34687578--34688257	345	2.0	345	85	3	913	31	18	21	28	1.97
34688663--34688703	18	2.2	19	83	16	59	43	4	36	14	1.67
34688671--34688708	18	2.2	17	86	9	51	47	5	31	15	1.68
34689537--34689763	24	9.8	24	70	14	145	33	7	4	54	1.47
34689503--34689709	70	3.0	69	72	12	179	33	6	4	55	1.46
34689504--34689776	69	4.0	69	74	14	199	34	6	4	54	1.46
34690101--34690258	43	3.7	43	89	0	237	32	25	18	24	1.97
34690101--34690278	43	4.2	42	82	6	189	32	26	17	23	1.97
34693528--34693609	38	2.2	38	88	0	119	54	8	14	21	1.66
34694648--34694713	7	9.4	7	85	6	62	33	45	0	21	1.52
34694640--34694713	21	3.5	21	83	7	71	32	44	0	22	1.53
34694661--34694713	14	3.8	14	92	0	79	32	49	0	18	1.48
34694823--34694855	15	2.3	15	94	5	59	33	33	0	33	1.58
34695173--34695309	40	3.4	41	73	8	106	20	23	21	35	1.96
34695173--34695261	39	2.2	41	82	4	101	17	25	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34697038--34697067	12	2.4	13	94	5	53	66	6	6	20	1.38
34703289--34703327	20	2.0	20	90	10	62	15	23	5	56	1.59
34703584--34703719	50	2.8	49	83	1	164	20	27	22	28	1.99
34703618--34703719	49	2.1	50	88	1	152	17	32	23	26	1.97
34711006--34711128	50	2.4	50	77	6	113	37	14	13	34	1.86
34712654--34712692	20	2.0	20	90	10	62	15	23	5	56	1.59
34712951--34713136	50	3.6	50	77	4	147	24	27	20	27	1.99
34722557--34722798	50	4.8	50	76	3	243	30	27	16	26	1.96
34722556--34722795	101	2.4	101	85	1	311	30	27	16	26	1.97
34730244--34730350	37	2.9	37	66	13	94	35	23	17	23	1.95
34736153--34736182	16	1.9	15	93	6	51	36	13	23	26	1.92
34737531--34737682	42	3.7	42	84	1	200	30	18	19	31	1.95
34745184--34745301	48	2.4	49	91	5	195	41	8	0	49	1.39
34745265--34745339	38	2.0	38	97	0	141	45	6	0	48	1.29
34745303--34745469	94	1.8	88	88	6	226	38	10	4	46	1.60
34747488--34747517	16	1.9	16	93	6	53	30	0	20	50	1.49
34748134--34748229	30	3.2	30	98	0	183	17	26	33	22	1.96
34748154--34748207	17	3.4	17	70	19	62	16	24	35	24	1.95
34764077--34764145	36	1.9	36	82	5	86	43	1	13	42	1.52
34764106--34764154	23	2.1	23	100	0	98	40	0	16	42	1.48
34766401--34766430	16	1.9	16	93	6	53	30	0	20	50	1.49
34768961--34768992	16	2.0	16	100	0	64	18	25	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34779211--34779273	31	2.0	31	100	0	126	55	6	9	28	1.56
34779658--34779695	19	2.0	19	89	0	58	47	21	26	5	1.71
34784689--34784865	54	3.3	55	81	7	218	45	22	15	16	1.84
34784689--34784859	27	6.3	27	79	2	173	45	22	14	16	1.84
34784689--34784845	81	1.9	81	83	5	201	47	21	14	15	1.82
34785185--34785274	28	3.2	28	87	0	135	27	24	18	28	1.98
34785185--34785286	28	3.6	28	85	2	107	26	22	19	31	1.98
34791679--34791763	27	3.2	26	79	3	80	44	20	16	18	1.87
34805982--34806082	48	2.1	47	88	1	148	36	23	12	26	1.91
34806127--34806161	17	2.0	18	94	5	63	40	20	0	40	1.52
34812997--34813132	39	3.5	39	91	0	182	48	21	1	28	1.59
34825300--34825358	27	2.3	27	83	13	72	40	3	3	52	1.35
34829780--34829813	9	3.8	9	96	0	59	91	2	0	5	0.51
34829777--34829812	17	2.1	17	90	10	56	88	2	0	8	0.59
34829780--34829834	9	5.8	9	83	10	56	85	5	5	3	0.83
34830789--34830836	7	7.0	7	95	4	89	70	0	14	14	1.16
34830793--34830836	13	3.3	13	93	6	79	72	0	13	13	1.12
34830789--34830836	20	2.3	21	96	3	89	70	0	14	14	1.16
34832076--34833027	131	7.3	130	89	2	1166	32	19	22	25	1.98
34833015--34833196	44	4.2	43	71	5	125	29	19	23	27	1.98
34833033--34833267	129	1.8	129	88	3	366	28	20	21	28	1.98
34833715--34833749	16	2.1	16	89	5	52	68	22	0	8	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34839829--34839853	7	3.6	7	100	0	50	0	28	0	72	0.86
34840642--34840826	50	3.7	49	77	9	176	32	16	20	31	1.94
34841382--34841428	24	2.0	24	83	8	60	57	4	6	31	1.43
34841553--34842083	286	1.9	287	87	3	793	33	19	15	31	1.93
34842462--34842510	16	3.2	16	66	16	50	48	8	12	30	1.69
34842451--34842510	29	2.1	29	100	0	120	45	6	16	31	1.74
34843344--34843394	17	2.8	18	70	21	52	37	33	9	19	1.85
34847080--34847140	29	2.1	29	82	14	74	39	1	1	57	1.18
34853945--34853982	19	2.1	19	85	5	51	47	13	0	39	1.42
34853949--34854370	138	3.1	138	91	0	684	40	9	5	44	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207