genome.fa.s19.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  186  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56659083--56659134	26	2.1	25	82	7	61	38	0	0	61	0.96
56672634--56672682	18	2.7	18	87	0	80	24	6	22	46	1.74
56672634--56672682	9	5.4	9	90	0	71	24	6	22	46	1.74
56672843--56672867	12	2.1	12	100	0	50	16	24	36	24	1.94
56678359--56678406	23	2.1	23	100	0	96	41	20	10	27	1.85
56685577--56685611	6	6.0	6	86	6	54	17	2	45	34	1.63
56695451--56695630	17	10.4	17	80	8	150	45	11	13	29	1.79
56695451--56695630	34	5.2	34	77	10	186	45	11	13	29	1.79
56695451--56695630	18	10.4	17	77	11	125	45	11	13	29	1.79
56695427--56695630	17	11.9	16	73	16	83	43	10	12	33	1.77
56695660--56695750	18	4.8	18	67	22	53	46	10	14	28	1.78
56695699--56695750	18	3.1	17	84	13	56	48	9	15	26	1.76
56695726--56695888	44	4.0	41	74	20	117	44	12	14	27	1.82
56695719--56695928	79	2.7	78	85	5	237	42	12	13	30	1.82
56695789--56695849	17	3.4	18	77	6	70	42	13	14	29	1.84
56695770--56695853	35	2.4	36	87	2	125	46	13	14	26	1.81
56695824--56695873	26	1.9	27	92	8	86	50	16	10	24	1.75
56695771--56695939	18	10.2	17	67	19	90	43	11	11	32	1.78
56695805--56695894	44	2.1	44	89	6	139	47	12	12	27	1.76
56695990--56696038	17	2.8	17	82	11	64	44	10	16	28	1.80
56696831--56696914	6	13.2	6	81	7	78	0	22	1	76	0.86
56696831--56696873	19	2.3	19	92	4	70	0	16	2	81	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56696838--56696911	7	10.9	7	80	9	57	0	22	0	77	0.78
56696838--56696915	13	6.0	13	83	4	95	0	24	0	75	0.80
56697049--56697087	17	2.2	17	86	9	51	0	15	17	66	1.25
56697462--56697623	30	5.5	29	77	10	116	40	3	20	35	1.71
56697499--56697615	29	3.9	29	81	7	119	42	2	21	33	1.66
56712304--56712339	6	6.0	6	100	0	72	16	0	50	33	1.46
56718336--56718443	42	2.6	42	87	0	162	28	29	17	24	1.97
56721046--56721102	26	2.2	26	81	6	62	21	19	24	35	1.96
56721065--56721119	26	2.2	26	93	3	94	14	21	21	41	1.89
56721203--56721259	24	2.4	24	77	16	64	19	22	19	38	1.93
56727332--56727364	15	2.2	15	94	0	57	75	0	24	0	0.80
56734640--56734683	17	2.5	17	88	3	61	54	4	2	38	1.33
56734691--56734748	19	3.0	19	73	9	55	63	0	1	34	1.04
56734940--56734996	20	2.6	22	83	10	64	40	0	0	59	0.97
56734964--56735007	15	2.9	15	79	3	52	34	0	0	65	0.93
56734992--56735025	17	2.0	17	88	0	50	35	0	0	64	0.94
56735573--56735613	20	2.1	19	86	4	55	51	2	2	43	1.28
56736803--56736834	5	6.6	5	96	3	57	37	0	0	62	0.95
56738708--56738734	10	2.7	10	100	0	54	59	0	0	40	0.98
56739037--56739242	43	4.8	43	89	2	297	28	32	18	20	1.96
56739430--56739489	18	3.4	18	64	13	52	40	10	6	43	1.64
56743804--56744075	41	6.7	41	88	1	361	30	31	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56743807--56744044	122	2.0	122	89	3	372	30	32	18	18	1.95
56743815--56744075	122	2.1	123	86	3	368	31	31	16	20	1.95
56743804--56744075	81	3.3	81	84	4	368	30	31	17	20	1.95
56752360--56752389	15	2.0	15	93	0	51	63	0	3	33	1.11
56754053--56754369	88	3.6	88	76	12	303	24	25	22	27	2.00
56754128--56754432	87	3.5	87	80	6	373	26	24	21	27	1.99
56754094--56754424	175	1.9	175	91	1	538	24	25	21	28	1.99
56754406--56754615	44	4.8	44	85	1	260	29	24	16	30	1.96
56756917--56756950	3	11.3	3	87	12	52	67	0	0	32	0.91
56756915--56756944	15	2.0	15	100	0	60	66	0	0	33	0.92
56764119--56764178	27	2.2	28	82	8	79	46	8	0	45	1.33
56764904--56764966	19	3.4	19	82	4	92	49	0	11	39	1.38
56765420--56765455	16	2.2	16	90	0	54	36	8	27	27	1.86
56765619--56765755	58	2.4	58	82	4	179	54	2	1	42	1.21
56767704--56767787	31	2.7	30	88	3	114	30	2	14	52	1.54
56767730--56767803	31	2.4	31	86	0	103	25	5	20	48	1.70
56768043--56768881	436	2.0	417	82	9	1035	43	11	12	32	1.79
56769671--56769761	45	2.0	44	91	6	148	54	4	7	32	1.49
56770412--56770642	91	2.6	92	93	3	398	25	3	11	58	1.50
56770919--56770965	20	2.3	20	75	13	51	65	8	2	23	1.31
56772290--56772606	89	3.6	89	74	10	238	56	13	4	24	1.56
56775651--56775708	30	2.0	29	82	3	71	44	8	20	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56788906--56788976	35	2.0	35	100	0	142	53	5	19	21	1.65
56789945--56789976	2	16.0	2	100	0	64	50	0	0	50	1.00
56791182--56791210	14	2.0	15	93	6	51	62	0	6	31	1.22
56791604--56791646	20	2.2	20	91	0	68	11	27	20	39	1.88
56791730--56791762	3	11.3	3	87	6	50	69	0	30	0	0.88
56791737--56791774	9	4.3	9	83	6	51	73	0	26	0	0.83
56792059--56792100	22	2.0	22	90	4	68	33	0	2	64	1.07
56794019--56794136	40	2.8	41	83	6	148	36	1	0	61	1.12
56794043--56794109	11	6.4	11	75	20	63	40	2	0	56	1.14
56794502--56794615	33	3.4	34	84	7	128	16	45	12	25	1.82
56794530--56794627	33	3.0	33	86	0	124	13	46	14	25	1.80
56796021--56796105	36	2.4	35	88	9	120	37	3	7	51	1.46
56796169--56796214	19	2.5	18	82	3	56	36	0	4	58	1.18
56796327--56796378	21	2.5	21	84	9	79	28	36	7	26	1.84
56803438--56803497	30	1.9	32	86	6	88	28	15	6	50	1.69
56804913--56805005	18	5.2	18	82	0	114	27	20	16	35	1.94
56811263--56811295	10	3.3	10	91	8	50	81	0	6	12	0.85
56821364--56821431	31	2.2	31	89	0	109	36	16	5	41	1.72
56822437--56822504	31	2.2	31	91	0	118	36	14	5	42	1.70
56824714--56824771	26	2.2	27	85	11	77	67	1	3	27	1.17
56825875--56825899	1	25.0	1	100	0	50	100	0	0	0	0.00
56834631--56834659	3	9.7	3	100	0	58	34	31	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56835486--56835545	31	1.9	31	86	6	86	56	6	11	25	1.59
56841023--56841058	2	18.0	2	100	0	72	50	0	50	0	1.00
56845214--56845282	32	2.1	33	91	8	113	36	5	10	47	1.61
56853706--56854051	27	12.9	27	81	2	401	41	21	17	19	1.91
56854109--56854183	26	2.8	26	82	9	73	38	16	20	25	1.92
56854002--56854184	98	1.9	99	94	1	323	37	15	19	26	1.92
56858000--56858195	107	1.8	107	85	0	275	29	14	27	29	1.95
56858767--56858795	12	2.4	12	100	0	58	24	0	13	62	1.32
56865719--56865970	123	2.1	122	87	4	357	38	26	19	15	1.91
56866490--56866540	3	17.0	3	100	0	102	33	33	0	33	1.58
56867210--56867244	16	2.2	16	100	0	70	71	0	5	22	1.07
56869633--56869707	26	2.9	26	89	0	123	40	24	17	18	1.91
56871744--56871878	50	2.7	50	94	0	234	24	23	32	19	1.97
56875176--56875211	3	12.0	3	93	0	54	33	38	0	27	1.57
56875173--56875210	18	2.1	18	95	0	67	34	42	0	23	1.55
56877621--56877668	18	2.7	18	81	9	62	37	16	4	41	1.68
56881461--56881494	6	5.7	6	100	0	68	85	0	0	14	0.60
56883615--56883882	27	10.0	27	82	1	270	43	18	16	22	1.88
56884075--56884148	26	2.8	26	81	0	94	18	17	22	40	1.91
56884257--56884342	28	3.0	28	86	1	109	27	19	20	31	1.97
56884266--56884344	28	2.8	28	88	0	113	26	22	21	29	1.99
56884376--56884455	40	2.0	40	92	0	133	23	12	31	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56886790--56886823	16	2.0	16	88	11	50	23	11	0	64	1.26
56886895--56887013	3	39.0	3	85	3	85	30	1	11	56	1.45
56887318--56887388	4	17.8	4	100	0	142	50	23	0	25	1.49
56887438--56887516	19	4.2	18	72	16	54	32	6	1	59	1.31
56887438--56887516	29	2.8	28	84	5	104	32	6	1	59	1.31
56893875--56894021	71	2.1	71	97	0	276	35	23	14	25	1.94
56894145--56894360	27	8.0	27	85	5	278	41	16	18	23	1.90
56894522--56894592	26	2.7	26	88	0	97	15	19	23	40	1.90
56894553--56894603	26	2.0	26	84	0	66	21	17	19	41	1.91
56894694--56894778	28	3.1	28	82	1	109	24	17	24	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207