genome.fa.s19.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  158  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48584695--48584740	14	3.3	14	93	0	83	56	2	0	41	1.11
48590645--48590718	21	3.5	22	85	10	100	35	27	22	14	1.94
48590644--48590731	21	4.0	23	82	10	96	34	25	22	18	1.96
48590645--48590731	44	2.0	41	82	6	102	34	25	22	17	1.96
48591722--48591762	3	13.7	3	100	0	82	65	0	0	34	0.93
48592046--48592090	23	2.0	23	90	0	72	40	22	8	28	1.84
48595103--48595441	50	6.8	50	85	2	414	25	22	30	22	1.99
48595055--48595441	100	3.8	100	83	3	427	26	20	29	22	1.99
48596925--48596968	23	1.9	23	95	0	79	43	25	4	27	1.74
48601024--48601116	45	2.1	45	100	0	186	33	9	17	39	1.82
48607975--48608048	24	3.0	24	82	5	87	35	22	24	17	1.95
48612850--48612877	11	2.5	11	100	0	56	92	0	7	0	0.37
48614948--48614998	20	2.5	20	84	12	61	27	7	3	60	1.42
48616106--48616162	6	9.2	6	88	3	51	49	1	0	49	1.11
48619389--48619416	14	2.0	14	100	0	56	7	7	14	71	1.29
48619576--48619619	21	2.0	21	86	4	61	47	4	4	43	1.44
48622993--48623023	11	2.9	11	95	4	55	0	0	12	87	0.55
48622994--48623023	16	1.9	15	93	6	51	0	0	13	86	0.57
48627154--48627199	19	2.4	19	85	10	58	43	2	0	54	1.12
48627160--48627211	19	2.8	18	80	8	59	46	1	1	50	1.23
48627976--48628014	11	3.4	11	83	13	51	71	5	0	23	1.05
48628003--48628037	14	2.4	14	90	9	52	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48628145--48628175	9	3.6	9	91	8	55	58	0	0	41	0.98
48628805--48629011	9	22.4	9	70	11	73	61	2	3	31	1.28
48628875--48628947	37	1.9	38	83	2	94	61	2	4	31	1.29
48628924--48629011	29	3.0	28	74	12	88	65	2	4	27	1.23
48628887--48629036	47	3.2	47	74	17	134	63	2	4	29	1.28
48629241--48629293	18	2.9	19	76	17	60	39	3	0	56	1.17
48629241--48629285	19	2.4	18	85	10	56	44	2	0	53	1.13
48629213--48629275	26	2.4	27	78	10	76	41	1	0	57	1.08
48629745--48629771	10	2.7	10	100	0	54	14	40	0	44	1.46
48632570--48632609	14	2.9	14	84	0	53	42	10	7	40	1.67
48632535--48632601	34	1.9	35	90	3	109	46	10	8	34	1.70
48633777--48633811	17	2.0	18	88	5	54	17	14	5	62	1.49
48634590--48634671	32	2.5	35	86	9	118	42	0	13	43	1.43
48634750--48635646	251	3.6	250	89	1	1309	37	17	17	27	1.92
48634750--48635643	125	7.1	126	87	2	1257	37	17	17	27	1.92
48647667--48647710	22	2.0	21	83	12	54	40	0	0	59	0.98
48649254--48649291	10	3.5	11	86	13	53	34	0	2	63	1.09
48650613--48650640	14	2.0	14	100	0	56	21	21	7	50	1.72
48655196--48655234	11	3.4	11	80	13	51	51	0	2	46	1.14
48655214--48655251	14	2.4	17	87	12	55	47	0	0	52	1.00
48656253--48656316	21	3.0	22	72	9	69	18	18	25	37	1.94
48661484--48661832	124	2.8	125	92	0	592	31	22	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48661804--48661860	28	2.0	28	100	0	114	28	19	14	38	1.90
48661813--48661875	28	2.2	28	82	0	72	31	19	12	36	1.89
48664061--48664097	9	4.1	9	92	0	65	45	13	10	29	1.77
48664624--48664652	9	3.2	9	100	0	58	31	0	0	68	0.89
48665123--48665148	5	5.2	5	100	0	52	19	19	19	42	1.90
48665184--48665224	7	5.7	7	85	2	55	68	0	0	31	0.90
48671003--48671052	15	3.3	15	76	17	50	0	18	6	76	0.99
48671932--48671965	17	1.9	18	88	5	52	38	8	0	52	1.33
48677805--48677853	3	16.3	3	100	0	98	32	0	0	67	0.91
48678876--48678914	20	1.9	21	89	5	62	35	0	5	58	1.20
48682319--48682375	30	1.9	29	85	3	78	33	1	5	59	1.30
48692493--48692537	23	2.0	23	86	0	63	28	0	2	68	1.01
48703383--48703450	16	4.0	16	75	11	55	45	25	7	22	1.77
48704171--48704202	15	2.1	15	94	0	55	15	6	9	68	1.36
48705808--48705883	37	2.1	36	83	11	93	40	1	2	55	1.22
48705808--48705883	11	6.8	11	72	21	52	40	1	2	55	1.22
48713048--48713136	46	1.9	46	90	0	142	35	19	11	33	1.87
48720711--48720740	13	2.3	13	94	0	51	23	6	13	56	1.60
48721492--48721526	18	2.0	17	88	5	52	45	0	0	54	0.99
48721762--48721829	16	4.2	16	94	0	118	38	33	0	27	1.57
48723426--48723466	20	2.0	20	86	9	57	24	4	21	48	1.69
48727102--48727154	26	2.0	26	81	0	61	33	16	20	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48727231--48727383	64	2.3	66	89	2	229	37	22	21	18	1.95
48727231--48727385	32	4.8	32	79	4	177	37	22	21	18	1.94
48727388--48727427	21	1.9	21	89	0	62	40	20	22	17	1.92
48727439--48727492	26	2.1	26	85	0	72	33	24	24	18	1.97
48729104--48729141	20	1.9	20	94	0	67	57	21	2	18	1.52
48731892--48731949	28	2.1	28	83	6	73	50	1	5	43	1.35
48733016--48733042	12	2.2	12	100	0	54	33	29	22	14	1.94
48734345--48734432	38	2.3	39	82	4	106	14	28	18	38	1.90
48740709--48740765	22	2.6	20	79	17	60	40	10	1	47	1.48
48740745--48740914	47	3.6	47	68	22	122	37	9	0	52	1.38
48749462--48749857	50	7.8	50	84	1	459	27	19	29	23	1.99
48749469--48749908	150	2.9	149	82	6	499	27	19	28	24	1.99
48760643--48760667	7	3.6	7	100	0	50	56	0	0	44	0.99
48760740--48760793	28	1.9	28	85	7	74	50	9	7	33	1.62
48767962--48767995	17	2.0	17	100	0	68	41	17	5	35	1.74
48775163--48775221	23	2.6	22	78	10	57	1	23	3	71	1.11
48775875--48776117	104	2.3	104	85	2	301	24	23	30	21	1.99
48781375--48781415	21	2.0	21	85	0	55	46	24	17	12	1.82
48781404--48781507	21	5.0	21	67	0	73	40	18	25	15	1.90
48781380--48781518	42	3.3	42	82	0	170	43	18	22	15	1.87
48782003--48782076	39	1.9	38	94	5	132	35	13	4	47	1.62
48782013--48782071	17	3.2	17	70	21	55	30	13	3	52	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48788939--48789032	21	4.5	21	72	0	71	44	17	20	18	1.87
48788936--48789062	21	6.1	20	68	9	58	44	15	20	19	1.87
48791266--48791320	24	2.2	26	93	6	96	40	21	16	21	1.91
48798201--48798281	31	2.6	31	86	0	117	41	14	18	24	1.88
48798644--48798677	18	1.9	18	94	5	61	38	0	5	55	1.24
48809317--48809348	12	2.6	13	85	14	50	6	25	0	68	1.12
48810467--48810506	19	2.0	20	90	4	64	30	15	12	42	1.83
48822755--48822796	19	2.2	19	100	0	84	38	16	4	40	1.70
48848869--48848909	20	2.0	20	100	0	82	58	7	0	34	1.26
48854891--48854921	15	2.1	15	93	0	53	38	3	32	25	1.72
48861451--48861636	51	3.7	49	83	3	228	23	17	27	30	1.97
48861840--48861912	37	1.9	38	83	2	94	43	2	20	32	1.66
48864799--48865137	178	1.9	179	95	0	617	38	11	25	24	1.88
48869638--48869756	45	2.6	45	97	0	229	21	17	13	47	1.81
48881823--48881866	22	2.0	22	86	8	63	13	18	29	38	1.89
48883177--48883212	6	6.0	6	93	0	63	63	0	19	16	1.30
48883131--48883285	75	2.0	76	88	4	233	50	3	20	25	1.65
48883252--48883285	6	5.5	6	93	6	59	70	0	14	14	1.17
48889616--48889643	6	4.7	6	100	0	56	0	67	0	32	0.91
48903742--48903833	24	3.8	24	86	4	114	21	23	23	30	1.99
48914228--48914268	21	2.0	21	86	9	59	39	0	4	56	1.21
48914838--48914863	8	3.2	8	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48915717--48915757	3	13.7	3	100	0	82	65	0	34	0	0.93
48918545--48918659	19	5.8	19	84	7	149	35	7	16	40	1.78
48918545--48918659	38	2.9	38	92	5	185	35	7	16	40	1.78
48919048--48919079	15	2.1	16	94	5	57	28	0	0	71	0.86
48924226--48924270	22	2.0	23	86	4	65	71	0	24	4	1.05
48925467--48925851	88	4.4	88	85	1	520	30	27	22	20	1.98
48925869--48925972	44	2.4	44	83	6	131	29	14	26	28	1.95
48926336--48926842	44	11.7	44	71	12	225	31	21	21	26	1.98
48926321--48926854	217	2.5	218	85	4	697	32	20	21	26	1.98
48926464--48926842	44	8.6	45	73	12	229	30	21	21	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207