genome.fa.s19.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  199  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59927546--59927581	15	2.5	14	86	8	54	44	8	0	47	1.33
59928145--59928190	16	2.9	16	81	15	51	21	0	4	73	1.00
59929210--59929269	5	12.2	5	73	16	54	73	0	5	21	1.02
59929203--59929276	4	17.5	4	79	20	64	72	0	4	22	1.01
59929230--59929272	9	4.8	9	88	8	61	72	0	4	23	1.04
59933170--59933205	15	2.5	14	86	8	54	44	8	0	47	1.33
59938976--59939013	11	3.5	11	86	13	53	55	15	21	7	1.66
59939057--59939114	30	1.9	30	85	0	80	20	36	29	13	1.91
59945196--59945426	46	5.0	46	92	0	381	27	25	9	36	1.88
59950791--59950942	46	3.4	46	91	2	247	33	15	25	26	1.95
59953571--59953611	3	14.0	3	94	5	75	65	0	0	34	0.93
59958334--59958482	37	4.0	37	91	0	235	28	21	13	36	1.91
59965729--59965904	46	3.8	46	79	14	209	20	20	29	29	1.98
59965726--59965897	93	1.8	93	95	2	310	20	20	29	28	1.98
59967318--59967350	17	1.9	17	93	0	57	57	0	3	39	1.14
59977422--59977566	43	3.4	42	81	6	150	17	18	27	35	1.94
59977551--59977751	43	4.6	43	78	6	176	26	31	19	22	1.98
59978063--59978197	21	6.4	21	87	0	171	4	42	15	37	1.67
59978145--59978216	21	3.4	21	78	0	72	4	40	18	37	1.70
59978227--59978357	66	2.0	66	84	3	174	16	24	18	41	1.90
59979994--59980026	16	2.0	17	94	5	59	30	12	6	51	1.63
59981725--59981755	16	1.9	16	93	0	53	32	0	16	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59981736--59981791	25	2.2	25	83	0	67	35	5	14	44	1.68
59981793--59981990	9	22.7	9	65	16	69	36	3	15	44	1.64
59981835--59981913	34	2.3	34	80	4	88	36	2	15	45	1.59
59981850--59981925	34	2.2	33	80	11	82	38	2	17	42	1.63
59981913--59982065	34	4.7	34	79	9	174	37	3	11	48	1.55
59981905--59982229	31	10.5	31	77	12	319	38	2	11	47	1.53
59981913--59982217	96	3.2	96	88	5	478	38	2	10	47	1.52
59981913--59982236	152	2.1	151	89	4	483	38	2	11	47	1.52
59982064--59982217	34	4.7	34	83	9	212	40	1	10	47	1.49
59982130--59982236	22	5.1	21	72	20	80	39	0	11	48	1.45
59982816--59982868	24	2.2	24	93	0	88	49	1	5	43	1.37
59983472--59983539	33	2.1	33	94	0	118	35	29	2	32	1.73
59983761--59983800	15	2.8	14	85	7	53	37	2	35	25	1.69
59983775--59983831	23	2.4	22	80	13	60	36	1	42	19	1.62
59983794--59983847	23	2.3	23	84	6	65	38	1	38	20	1.63
59985548--59985579	12	2.7	12	100	0	64	43	12	0	43	1.42
59986365--59986709	41	8.4	40	84	4	188	34	25	24	15	1.95
59986388--59986709	82	3.9	82	86	1	428	33	26	24	15	1.95
59986348--59986709	166	2.2	165	83	1	447	33	25	24	16	1.96
59986775--59986884	40	2.8	40	77	4	116	15	26	21	36	1.93
60003833--60003880	21	2.3	21	81	0	60	12	50	10	27	1.73
60012356--60013451	550	2.0	551	99	0	2185	29	22	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60015102--60015197	42	2.3	42	74	0	102	43	16	22	16	1.87
60017548--60017614	34	1.9	35	87	3	100	31	8	14	44	1.76
60019975--60020145	10	17.4	10	66	12	77	61	4	2	32	1.27
60019962--60020104	19	7.5	19	71	20	86	60	3	2	33	1.25
60019986--60020039	28	2.0	27	85	10	74	66	3	1	27	1.19
60020011--60020095	31	2.8	31	80	8	86	60	4	2	32	1.30
60019964--60020145	9	18.7	9	68	16	71	61	3	2	31	1.28
60019964--60020145	20	9.3	19	69	15	95	61	3	2	31	1.28
60020051--60020152	19	5.1	20	68	15	59	60	5	2	30	1.35
60020660--60020684	10	2.5	10	100	0	50	40	0	0	60	0.97
60020671--60020739	19	3.9	17	74	20	54	30	0	4	65	1.12
60020699--60020796	9	10.6	9	70	15	58	28	1	4	66	1.17
60020707--60020759	19	2.7	19	85	8	63	33	1	3	60	1.26
60020698--60020751	27	2.0	27	85	7	74	31	0	5	62	1.18
60020682--60020796	19	6.2	19	68	17	55	27	0	5	66	1.19
60020685--60020817	10	13.6	10	69	17	50	29	1	5	63	1.25
60025133--60025191	31	1.9	30	82	6	73	45	10	10	33	1.72
60028354--60028416	20	3.2	19	73	13	56	26	3	1	68	1.14
60028393--60028427	18	1.9	18	88	0	52	42	0	0	57	0.99
60028459--60028503	20	2.2	21	88	11	67	28	0	6	64	1.19
60030168--60030203	15	2.5	14	86	8	54	44	8	0	47	1.33
60033790--60033847	29	2.0	29	89	0	89	39	20	18	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60035425--60035460	15	2.5	14	86	8	54	44	8	0	47	1.33
60036896--60036937	19	2.2	19	83	8	50	38	4	0	57	1.20
60044530--60044646	57	2.0	58	83	4	148	42	5	22	29	1.77
60046579--60046605	4	6.8	4	100	0	54	74	0	0	25	0.83
60052950--60053182	41	5.7	41	91	2	360	31	20	24	23	1.98
60053156--60053208	26	2.0	26	92	7	90	20	22	32	24	1.98
60053115--60053245	67	1.9	68	86	7	187	25	19	27	28	1.98
60053185--60053327	42	3.4	42	78	8	148	23	16	25	34	1.95
60053033--60053327	151	2.0	148	81	6	344	27	18	25	28	1.98
60057976--60058024	24	2.1	23	81	7	55	59	0	0	40	0.98
60058446--60058496	23	2.3	23	87	9	72	58	15	3	21	1.53
60058809--60058851	18	2.4	18	80	7	52	51	0	2	46	1.13
60070093--60070144	19	2.7	20	76	5	63	34	0	3	61	1.14
60070956--60070989	16	2.1	16	89	10	52	26	2	0	70	1.01
60075696--60075767	21	3.0	24	73	19	62	41	1	1	55	1.17
60077241--60077286	23	2.0	23	86	4	65	52	8	2	36	1.45
60083356--60083406	27	2.0	25	84	7	66	35	15	23	25	1.94
60083523--60083584	24	2.7	23	82	2	61	27	19	29	24	1.98
60083546--60083591	23	2.0	23	86	0	65	19	19	32	28	1.96
60090026--60090258	41	5.7	41	92	2	369	31	20	24	23	1.98
60090232--60090284	26	2.0	26	92	7	90	20	22	32	24	1.98
60090191--60090321	67	1.9	68	86	7	187	25	19	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60090261--60090403	42	3.4	42	78	8	148	23	16	25	34	1.95
60090109--60090403	151	2.0	148	82	6	353	27	18	25	28	1.98
60094010--60094061	19	2.7	20	76	5	63	34	0	3	61	1.14
60094876--60094909	16	2.1	16	89	10	52	26	2	0	70	1.01
60099631--60099702	21	3.0	24	73	19	62	41	1	1	55	1.17
60101177--60101222	23	2.0	23	86	4	65	52	8	2	36	1.45
60107288--60107338	27	2.0	25	84	7	66	35	15	23	25	1.94
60107455--60107516	24	2.7	23	82	2	61	27	17	29	25	1.98
60109380--60109420	19	2.2	19	100	0	82	53	9	14	21	1.70
60118702--60118736	18	1.9	18	88	0	52	68	0	0	31	0.90
60120942--60120987	20	2.3	20	92	0	74	36	15	0	47	1.45
60120950--60120992	20	2.2	20	91	0	68	34	18	2	44	1.63
60120958--60121001	20	2.2	20	87	0	61	36	13	4	45	1.64
60126786--60126829	14	2.8	16	80	16	56	54	0	0	45	0.99
60127725--60127769	23	2.0	23	95	0	81	42	20	8	28	1.82
60136740--60136804	31	2.1	31	88	2	96	38	12	13	35	1.83
60138883--60138941	32	1.9	32	89	6	95	35	3	5	55	1.38
60145614--60146413	44	17.6	44	70	12	374	31	18	21	28	1.97
60145696--60146001	96	3.3	94	75	12	317	30	16	22	30	1.96
60145641--60146098	181	2.5	181	88	1	648	31	17	22	29	1.96
60146013--60146373	139	2.6	138	82	4	390	35	18	18	26	1.95
60146711--60146742	16	1.9	17	93	6	57	75	9	0	15	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60146735--60146765	15	2.1	15	93	0	53	64	12	6	16	1.47
60148125--60148203	12	6.5	12	73	7	70	29	10	3	56	1.49
60154256--60154497	121	2.0	120	94	2	425	33	8	13	44	1.75
60156964--60157009	23	2.0	22	88	12	67	60	4	0	34	1.16
60156964--60157009	22	2.0	23	88	12	69	60	4	0	34	1.16
60157419--60157453	13	2.5	15	86	13	56	11	0	0	88	0.51
60157420--60157452	7	4.9	7	92	7	59	12	0	0	87	0.53
60158187--60158235	18	2.8	18	87	3	64	12	30	40	16	1.85
60164760--60164794	13	2.8	12	87	8	52	80	0	17	2	0.84
60165769--60165952	99	1.9	99	93	2	316	34	10	17	36	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207