genome.fa.s19.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  105  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31589579--31589626	25	1.9	25	100	0	96	37	4	35	22	1.74
31594445--31594549	54	1.9	54	92	0	174	28	27	23	20	1.99
31594449--31594572	54	2.3	54	84	2	160	28	26	23	21	1.99
31595639--31595663	13	1.9	13	100	0	50	60	0	0	40	0.97
31598513--31598576	25	2.6	25	90	5	94	32	20	25	21	1.97
31602161--31602193	13	2.4	14	90	5	50	30	15	3	51	1.58
31603717--31603848	33	3.7	33	74	19	122	31	25	21	21	1.98
31603904--31603981	27	2.7	27	82	11	84	32	30	19	17	1.95
31603800--31603993	104	1.9	104	91	1	309	30	27	20	21	1.98
31610574--31610729	33	4.5	33	72	15	143	33	26	18	21	1.96
31610574--31610908	108	3.1	108	86	5	400	32	27	19	21	1.97
31613178--31613222	14	3.3	14	76	17	58	64	0	20	15	1.29
31613178--31613239	27	2.3	27	94	2	108	64	1	19	14	1.37
31617388--31617449	9	6.9	9	78	7	72	35	0	19	45	1.51
31617470--31617536	35	1.9	35	90	0	107	38	5	8	46	1.60
31617537--31617563	13	2.1	13	100	0	54	37	11	0	51	1.37
31619754--31619809	22	2.5	23	82	2	69	51	1	1	44	1.22
31619785--31619824	16	2.5	16	91	0	62	47	2	7	42	1.45
31619835--31619974	59	2.4	59	96	0	253	38	3	9	48	1.53
31620080--31620123	24	1.9	24	90	9	74	61	2	0	36	1.09
31621098--31621139	21	2.0	21	90	0	66	54	7	2	35	1.41
31622531--31622655	48	2.6	48	79	5	153	44	11	28	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31622736--31622824	41	2.2	41	87	0	124	15	21	14	48	1.81
31634724--31634769	20	2.4	19	85	7	65	32	4	0	63	1.14
31634732--31634769	20	1.9	20	94	0	67	34	2	0	63	1.09
31644610--31644787	27	6.6	27	84	3	205	26	14	28	29	1.95
31644610--31644787	54	3.3	55	84	4	227	26	14	28	29	1.95
31652516--31652693	27	6.6	27	84	3	205	26	14	28	29	1.95
31652516--31652693	54	3.3	55	84	4	227	26	14	28	29	1.95
31655940--31656163	40	5.6	39	84	5	231	25	23	26	24	2.00
31655993--31656163	78	2.2	79	86	4	229	25	22	26	24	2.00
31655947--31656196	79	3.2	77	79	11	240	27	22	26	24	2.00
31659214--31659387	51	3.4	50	79	3	188	24	16	27	31	1.97
31659216--31659347	50	2.6	50	85	1	174	25	18	25	30	1.98
31659404--31659498	45	2.1	45	92	0	163	26	16	24	32	1.96
31659727--31659770	23	2.0	22	82	13	54	43	4	20	31	1.72
31664736--31664763	6	4.7	6	100	0	56	46	0	35	17	1.49
31664767--31664951	51	3.7	50	79	6	169	24	17	26	31	1.97
31664767--31664951	101	1.8	102	88	3	284	24	17	26	31	1.97
31664872--31664953	26	3.2	26	66	27	75	23	13	29	34	1.93
31665377--31665594	51	4.3	51	77	8	192	26	15	27	30	1.96
31665512--31665592	26	3.2	26	65	28	73	22	14	29	33	1.94
31665412--31665614	101	2.0	101	82	5	250	27	16	25	31	1.96
31670788--31670972	51	3.7	50	81	6	187	24	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31670788--31670972	101	1.8	102	91	3	311	24	17	26	30	1.97
31670893--31670974	26	3.2	26	66	27	75	24	14	28	32	1.94
31672627--31672766	50	2.8	49	79	12	142	22	16	28	32	1.95
31672629--31672815	51	3.7	50	78	5	189	22	16	28	32	1.95
31672821--31672912	45	2.0	45	87	0	130	27	18	22	31	1.97
31691615--31691742	41	3.1	41	86	0	157	23	18	28	28	1.98
31691914--31692103	7	26.9	7	71	12	57	21	1	30	46	1.58
31691972--31692104	21	6.3	21	79	8	119	22	0	30	46	1.52
31691914--31692066	14	10.7	14	72	16	82	20	1	30	47	1.59
31692375--31692473	28	3.4	27	73	14	65	25	1	27	46	1.59
31693542--31693584	6	7.2	6	83	0	50	6	30	30	32	1.84
31695460--31695486	3	9.0	3	100	0	54	33	0	0	66	0.92
31697926--31698077	42	3.6	42	90	2	216	24	20	29	25	1.99
31702768--31702856	25	3.6	24	77	6	88	28	23	21	26	1.99
31704469--31704600	27	4.8	27	77	8	124	37	12	18	31	1.88
31704469--31704600	55	2.4	55	84	3	176	37	12	18	31	1.88
31704450--31704634	27	6.7	27	71	15	112	35	14	21	29	1.92
31704615--31704691	27	2.8	28	77	11	81	32	16	25	24	1.96
31704796--31704907	27	4.1	27	85	0	143	40	8	25	25	1.84
31704788--31704864	27	3.0	24	89	10	61	38	6	28	25	1.81
31704734--31704907	54	3.2	55	77	6	133	37	9	27	25	1.87
31707067--31707197	50	2.6	50	85	0	181	21	29	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31714429--31714467	20	2.0	20	94	0	69	15	23	2	58	1.49
31714721--31714909	50	3.7	50	79	4	180	23	29	20	26	1.99
31714669--31714909	50	4.7	50	76	4	162	24	28	20	26	1.99
31715332--31715384	25	2.1	26	82	3	63	73	5	1	18	1.12
31715433--31715471	20	2.0	20	100	0	78	28	5	0	66	1.12
31715435--31715471	10	3.7	10	92	0	65	29	5	0	64	1.15
31717703--31717732	15	2.0	15	93	0	51	50	0	33	16	1.46
31718042--31718292	43	5.9	43	85	0	342	24	18	30	26	1.98
31739432--31739497	25	2.7	25	88	2	98	22	28	18	30	1.97
31742763--31742873	54	2.1	54	92	0	186	25	12	23	38	1.90
31745617--31745767	28	5.4	28	92	1	232	33	27	11	26	1.92
31753838--31753988	28	5.4	28	92	1	232	33	27	11	26	1.92
31757259--31757338	42	1.9	42	94	0	142	46	13	12	27	1.80
31758741--31758847	25	4.3	24	77	8	99	26	27	19	27	1.99
31762358--31762433	29	2.7	29	81	2	82	30	18	19	31	1.96
31763461--31763527	33	2.0	33	97	0	125	16	23	34	25	1.95
31764583--31764704	41	3.0	41	81	2	138	33	17	27	22	1.96
31772675--31772768	47	2.0	47	97	0	179	36	26	4	32	1.76
31786043--31786087	19	2.3	19	88	3	63	75	2	17	4	1.07
31797679--31797705	14	1.9	14	100	0	54	33	7	29	29	1.85
31814203--31814570	102	3.6	102	91	0	583	31	29	20	19	1.97
31814412--31814566	33	4.6	33	67	21	106	33	28	21	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31821859--31822089	33	6.6	33	69	22	150	34	27	19	18	1.95
31821818--31821989	76	2.3	76	91	1	274	34	29	16	19	1.94
31821966--31822019	27	2.0	28	88	3	83	29	31	24	14	1.95
31821890--31822093	102	2.0	103	94	0	356	32	28	20	19	1.96
31821753--31822091	178	1.9	178	93	0	588	32	29	19	18	1.96
31826176--31826469	50	5.9	50	79	2	268	22	27	21	28	1.99
31832675--31832860	51	3.6	51	86	4	230	23	30	20	26	1.98
31839518--31839542	13	1.9	13	100	0	50	40	24	28	8	1.83
31839638--31841067	719	2.0	714	94	1	2488	40	23	9	26	1.85
31843384--31843448	35	1.9	35	90	6	107	40	7	0	52	1.30
31845062--31845147	25	3.5	24	85	6	109	32	17	22	27	1.96
31845058--31845172	50	2.3	50	82	5	117	33	20	19	26	1.97
31847788--31847843	12	4.7	12	74	14	53	64	0	23	12	1.27
31862290--31862678	22	17.7	22	83	0	465	43	17	9	29	1.81
31862290--31862678	44	8.9	44	88	0	555	43	17	9	29	1.81
31863506--31863656	43	3.5	43	89	3	198	30	26	17	25	1.98
31869023--31869064	22	2.0	21	85	4	57	9	21	4	64	1.42
31869982--31870123	27	5.3	26	79	6	133	43	19	17	19	1.88
31870020--31870150	54	2.4	54	83	9	169	42	19	18	19	1.89
31869969--31870151	27	6.8	27	73	8	124	42	19	18	19	1.89
31869969--31870149	81	2.3	79	84	4	211	43	18	18	19	1.89
31870320--31870391	26	2.8	26	91	0	117	13	22	25	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31870497--31870587	28	3.1	28	83	7	119	27	24	20	27	1.99
31870791--31870857	26	2.6	26	92	4	109	25	1	19	53	1.53
31873638--31873876	50	4.7	50	76	4	149	24	27	20	28	1.99
31875910--31875952	22	2.0	22	85	0	59	44	13	6	34	1.72
31875918--31876301	22	17.7	22	78	6	390	45	15	9	29	1.78
31875918--31876301	44	8.9	44	85	5	496	45	15	9	29	1.78
31876146--31876295	11	13.7	11	68	15	62	43	18	8	29	1.80
31875946--31876287	170	2.0	171	86	2	483	45	15	9	29	1.78
31878549--31878725	27	6.6	27	81	5	187	27	15	27	29	1.96
31878550--31878704	82	1.9	80	85	5	213	27	16	27	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207