genome.fa.s19.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  113  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33951438--33951627	51	3.7	51	75	8	154	30	27	17	24	1.97
33960666--33960718	15	3.5	16	76	16	51	39	0	43	16	1.49
33985033--33985158	64	2.0	64	93	0	216	31	15	15	38	1.88
33992242--33993211	483	2.0	483	96	0	1778	30	15	22	30	1.96
34001384--34001416	14	2.4	14	94	0	57	45	24	6	24	1.75
34016192--34016297	55	1.9	54	84	5	142	22	33	20	22	1.97
34032042--34032173	19	6.8	19	91	3	210	37	10	15	35	1.83
34032112--34032196	19	4.0	23	83	11	78	38	5	16	38	1.73
34032152--34032196	23	2.0	22	91	4	72	37	4	17	40	1.70
34032162--34032206	23	2.0	23	86	4	65	33	4	15	46	1.66
34032808--34032858	25	2.0	25	88	7	75	29	7	3	58	1.44
34033521--34033717	98	2.0	98	91	0	322	27	10	24	38	1.87
34034379--34034411	17	1.9	17	93	0	57	42	6	24	27	1.78
34036856--34036898	17	2.4	19	84	7	54	16	9	6	67	1.40
34040048--34040142	20	4.8	20	67	14	70	40	20	29	10	1.85
34044401--34044445	20	2.2	20	88	7	65	51	8	6	33	1.59
34046556--34046693	18	7.7	18	68	23	53	10	18	1	70	1.23
34046601--34046635	16	2.3	16	90	9	56	8	20	0	71	1.11
34046584--34046635	13	3.6	15	77	15	56	11	21	0	67	1.22
34046590--34046688	6	16.0	6	70	8	65	8	19	1	71	1.16
34047553--34047596	18	2.4	18	84	3	52	15	13	4	65	1.41
34047549--34047598	19	2.6	18	78	9	55	14	14	4	68	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34048808--34048852	20	2.2	20	88	7	65	51	8	6	33	1.59
34051214--34051255	15	2.8	15	92	0	66	26	23	11	38	1.90
34056070--34056130	30	2.0	30	96	0	113	34	0	21	44	1.53
34059708--34059759	17	2.7	19	74	17	54	25	13	21	40	1.89
34060303--34060357	21	2.7	20	80	8	65	5	41	18	34	1.73
34065825--34066134	9	35.3	9	73	13	263	30	1	22	45	1.60
34065831--34065865	19	1.9	17	100	0	52	28	5	25	40	1.78
34065849--34065915	26	2.6	26	90	0	107	29	2	22	44	1.67
34065896--34065960	25	2.6	25	97	0	121	30	0	23	46	1.53
34065829--34066133	43	7.0	43	75	12	257	30	1	22	45	1.60
34069170--34069250	39	2.0	40	88	2	119	38	38	2	20	1.67
34069960--34070040	39	2.0	40	90	2	128	38	38	2	20	1.67
34068508--34070089	789	2.0	789	95	0	2833	37	15	9	37	1.81
34070386--34070419	14	2.3	15	90	5	52	41	32	0	26	1.56
34070631--34071085	113	4.0	111	76	11	383	29	24	20	25	1.99
34071156--34071190	12	2.9	12	100	0	70	34	34	22	8	1.85
34073883--34073921	19	2.1	19	100	0	78	38	20	0	41	1.53
34073970--34074002	15	2.2	15	89	10	50	12	12	6	69	1.35
34094584--34094638	23	2.5	22	75	16	60	76	0	9	14	1.02
34102187--34102238	22	2.4	21	78	15	52	34	21	1	42	1.64
34114260--34114308	5	9.6	5	82	12	64	40	0	0	59	0.98
34114259--34114299	8	4.9	8	85	8	55	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34115087--34115122	16	2.3	16	95	4	65	61	2	5	30	1.33
34115418--34115484	22	3.0	22	80	0	71	16	22	19	41	1.90
34116721--34116795	19	3.8	19	89	6	114	38	8	16	37	1.78
34116722--34116784	21	3.1	21	95	4	112	38	9	14	38	1.78
34116736--34116818	21	3.9	22	78	15	59	38	6	14	40	1.71
34117239--34117276	15	2.6	15	83	4	51	26	0	2	71	1.00
34117241--34117291	12	4.0	12	82	12	50	29	0	1	68	1.00
34117255--34117292	12	2.8	13	88	11	51	34	0	0	65	0.93
34117319--34117381	31	2.1	31	82	5	76	42	6	1	49	1.37
34139546--34139571	10	2.6	10	100	0	52	53	11	0	34	1.37
34140948--34141290	171	2.0	170	94	0	596	44	9	8	37	1.68
34143743--34143900	29	5.4	29	80	3	156	25	25	9	38	1.86
34150249--34150406	29	5.4	29	73	10	110	24	27	12	36	1.91
34154076--34154105	15	1.9	16	93	6	53	56	0	0	43	0.99
34160102--34160309	27	7.7	26	80	9	195	44	20	18	16	1.87
34160112--34160298	54	3.5	54	87	2	259	44	20	18	16	1.86
34160102--34160296	81	2.4	81	83	3	232	44	20	18	16	1.87
34160112--34160326	54	4.0	54	83	2	245	44	20	18	17	1.87
34160102--34160326	81	2.8	79	78	8	222	44	20	18	17	1.88
34160658--34160718	30	2.0	31	93	3	106	27	27	19	24	1.99
34162433--34162493	30	2.0	31	83	3	79	29	24	16	29	1.96
34170888--34171204	40	7.9	40	86	0	384	37	18	26	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34170925--34170985	20	3.0	20	65	9	52	34	14	32	18	1.91
34171027--34171204	20	8.9	20	66	11	105	37	19	26	16	1.93
34177461--34177543	35	2.4	35	97	0	157	39	3	0	56	1.17
34177455--34177547	35	2.4	38	82	15	129	37	3	0	59	1.14
34183604--34183682	27	2.9	28	72	10	83	24	24	12	39	1.90
34183835--34184038	45	4.5	45	86	0	282	22	21	12	43	1.86
34188016--34188068	16	3.3	16	81	0	61	58	1	22	16	1.48
34192046--34192077	13	2.5	13	94	0	55	28	6	37	28	1.81
34193600--34193666	34	2.0	34	84	0	89	31	4	20	43	1.72
34198090--34198161	27	2.7	27	86	0	99	37	12	26	23	1.90
34198151--34198218	27	2.5	27	78	0	73	38	14	23	23	1.92
34198171--34198231	27	2.3	27	82	5	70	36	21	19	22	1.95
34203599--34203625	13	2.1	13	100	0	54	29	0	7	62	1.22
34203727--34203945	50	4.4	50	88	0	285	27	21	28	21	1.99
34204477--34204517	22	1.9	21	90	5	64	17	19	21	41	1.90
34204605--34204711	42	2.6	42	88	7	164	25	22	18	33	1.97
34205039--34205109	21	3.4	20	84	7	88	4	45	18	32	1.69
34208076--34208197	22	5.3	22	62	21	61	25	29	11	33	1.91
34208048--34208260	47	4.6	47	89	4	333	27	30	8	34	1.86
34208048--34208260	92	2.3	93	87	4	331	27	30	8	34	1.86
34209871--34209990	56	2.1	56	98	0	231	22	23	9	45	1.81
34212510--34213202	47	14.6	47	93	2	1143	32	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34212510--34213202	239	2.9	239	96	1	1234	32	8	29	29	1.87
34215669--34215788	9	13.7	9	64	26	53	35	0	19	44	1.57
34215677--34215722	14	3.6	14	72	27	57	39	0	17	43	1.49
34215669--34215739	23	3.0	23	95	2	124	40	0	16	42	1.49
34215715--34215776	31	2.0	32	87	3	90	37	1	17	43	1.59
34215705--34216007	96	3.2	95	92	2	500	34	1	15	48	1.54
34215783--34215945	24	6.9	23	68	14	89	36	1	12	49	1.52
34217601--34217652	14	3.4	14	76	23	59	36	19	13	30	1.90
34218101--34218383	148	1.9	148	86	2	399	36	21	17	24	1.95
34218848--34218916	8	9.2	8	76	14	60	42	34	2	20	1.67
34218848--34218923	14	5.1	15	74	12	59	42	32	2	22	1.67
34218848--34218916	15	4.7	15	77	13	72	42	34	2	20	1.67
34218964--34219032	7	9.9	7	78	6	50	43	33	1	21	1.62
34219334--34219386	14	3.7	14	76	14	54	47	37	0	15	1.45
34219530--34219587	21	2.8	22	75	19	61	48	29	5	17	1.68
34219746--34220612	115	7.6	114	76	10	760	27	22	18	31	1.97
34219746--34220609	229	3.8	229	78	7	814	27	22	18	31	1.97
34225365--34225428	26	2.4	27	92	5	105	43	4	0	51	1.22
34225474--34225525	27	1.9	27	88	7	79	28	21	36	13	1.91
34226025--34226120	19	5.2	19	74	5	106	39	12	0	47	1.41
34226033--34226120	18	4.8	18	74	4	86	38	12	0	48	1.41
34226025--34226124	37	2.7	37	93	1	175	42	12	0	46	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34226197--34226292	19	5.2	19	79	5	124	38	12	0	48	1.41
34226197--34226292	37	2.6	37	100	0	192	38	12	0	48	1.41
34226010--34226382	172	2.2	172	97	0	703	42	8	4	44	1.54
34226683--34226743	27	2.3	27	94	0	104	50	0	6	42	1.28
34230752--34230791	16	2.5	16	91	0	62	22	5	10	62	1.46
34230877--34230966	47	1.9	47	95	0	162	38	5	7	47	1.56
34231361--34231406	18	2.6	18	86	3	58	43	0	2	54	1.12
34231905--34231980	39	2.0	39	87	7	111	40	6	5	47	1.52
34231905--34232015	40	2.8	39	82	8	118	41	6	5	46	1.52
34233245--34233285	21	2.0	21	85	0	55	56	2	2	39	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207