genome.fa.s19.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  182  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55656854--55656990	25	5.6	25	77	10	120	45	16	2	36	1.59
55662443--55662573	66	2.0	66	87	3	192	40	16	28	14	1.88
55662558--55662616	21	2.8	21	86	0	73	37	16	37	8	1.80
55662584--55662671	21	4.2	21	86	0	122	32	17	45	4	1.68
55663045--55663231	43	4.4	42	79	8	191	23	19	31	25	1.98
55663045--55663231	86	2.2	85	86	2	250	23	19	31	25	1.98
55663220--55663334	43	2.7	43	87	0	149	27	33	20	19	1.96
55663220--55663352	43	3.1	43	84	8	146	27	34	19	18	1.95
55677300--55677527	109	2.1	109	97	0	429	47	14	10	28	1.76
55684604--55684659	26	2.2	26	83	6	69	48	7	8	35	1.62
55684611--55684660	26	1.9	26	88	8	75	50	6	6	38	1.52
55687006--55687048	6	7.0	6	89	5	68	18	16	13	51	1.77
55688818--55688855	20	1.9	20	100	0	76	47	0	2	50	1.15
55688967--55689003	13	2.7	14	91	4	58	40	10	5	43	1.63
55695065--55695171	40	2.7	40	86	0	151	29	19	24	26	1.98
55694971--55695291	156	2.1	153	87	2	462	31	17	23	27	1.97
55695105--55695402	116	2.6	117	81	4	325	31	15	24	28	1.96
55695337--55695434	40	2.4	40	77	9	101	27	16	26	29	1.97
55695525--55695592	22	3.1	22	75	8	68	23	0	23	52	1.47
55695605--55695648	14	3.1	14	83	6	54	20	0	27	52	1.47
55695616--55695656	21	2.0	21	85	0	55	19	0	31	48	1.49
55695617--55695657	14	2.9	14	81	0	55	17	0	31	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55695814--55695876	19	3.2	19	82	13	74	14	0	34	50	1.43
55695886--55695972	36	2.4	36	82	0	102	24	1	31	43	1.61
55695814--55695962	7	21.6	7	73	9	74	19	1	32	46	1.58
55695921--55695962	22	1.9	22	90	0	66	19	0	33	47	1.49
55697100--55697188	43	2.1	43	82	4	108	33	14	22	29	1.94
55697123--55697392	43	6.3	43	80	5	269	26	16	24	32	1.96
55701295--55701359	23	2.7	23	81	15	78	38	6	3	52	1.42
55701342--55701384	16	2.8	15	89	3	59	32	0	0	67	0.91
55701379--55701413	12	2.9	12	86	0	52	40	14	0	45	1.45
55701897--55702272	188	2.0	186	82	5	463	28	14	16	39	1.89
55703259--55703698	221	2.0	221	93	0	745	41	21	6	30	1.77
55705380--55705432	25	2.1	25	100	0	106	15	11	30	43	1.81
55708307--55708397	23	4.0	23	94	0	146	18	21	27	31	1.97
55716148--55716194	18	2.4	19	82	10	51	27	4	10	57	1.51
55721405--55721524	38	3.2	38	76	5	113	22	25	28	23	1.99
55723567--55723605	16	2.4	16	91	4	60	58	0	2	38	1.12
55723580--55723618	14	2.9	13	85	14	53	58	0	0	41	0.98
55730150--55730206	15	3.8	15	72	9	62	47	7	21	24	1.75
55736566--55736606	18	2.3	19	87	8	59	43	0	2	53	1.13
55737390--55737432	17	2.5	18	82	17	56	13	18	34	32	1.90
55737423--55737471	17	2.9	17	75	0	53	22	18	32	26	1.97
55744876--55744913	20	1.9	20	100	0	76	26	7	18	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55754227--55755052	277	3.0	277	89	2	1216	45	7	20	25	1.78
55755182--55755210	14	2.0	15	93	6	51	68	0	24	6	1.13
55757881--55757905	6	4.2	6	100	0	50	16	0	0	84	0.63
55762823--55763166	171	2.0	172	86	1	474	27	14	20	37	1.92
55763700--55763733	14	2.4	14	90	5	50	44	5	8	41	1.60
55766246--55766276	13	2.4	13	94	0	53	74	0	9	16	1.07
55769011--55769055	12	3.6	13	82	8	58	24	0	8	66	1.20
55771750--55771806	30	1.9	30	96	0	105	61	8	7	22	1.50
55776433--55776523	25	3.6	25	83	4	112	31	18	29	19	1.96
55776845--55776904	30	2.0	30	96	0	111	38	23	5	33	1.76
55779823--55779892	33	2.1	34	81	2	79	28	21	27	22	1.99
55779855--55779921	28	2.4	29	85	9	95	31	20	25	22	1.98
55780236--55780303	27	2.5	27	83	4	75	23	17	20	38	1.93
55780268--55780497	27	8.5	27	85	3	268	19	20	18	42	1.90
55780270--55780497	54	4.2	54	84	3	298	18	19	18	42	1.89
55780268--55780500	81	2.9	81	84	7	303	19	19	18	42	1.89
55786497--55786597	25	4.0	25	76	0	94	37	16	25	19	1.93
55787221--55787301	24	3.4	24	83	6	101	41	24	8	24	1.83
55787723--55787748	13	2.0	13	100	0	52	30	15	15	38	1.88
55794733--55794762	9	3.3	9	95	0	51	53	10	0	36	1.35
55798823--55798861	20	1.9	21	84	5	53	12	2	15	69	1.30
55806585--55806619	12	3.2	11	88	11	54	8	25	2	62	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55814624--55814691	34	2.0	35	88	2	102	22	25	22	30	1.99
55820701--55820941	50	4.7	50	88	4	322	21	31	22	24	1.98
55820700--55820947	99	2.4	102	85	6	322	21	31	22	25	1.98
55821272--55821329	30	1.9	30	89	0	89	29	24	5	41	1.76
55827371--55827619	50	4.8	50	86	3	318	21	29	21	26	1.99
55827957--55828014	30	1.9	31	82	6	75	27	22	6	43	1.79
55830717--55830755	19	2.1	19	85	4	53	33	38	2	25	1.70
55832069--55832105	18	2.0	19	85	15	51	32	0	51	16	1.45
55838417--55838514	25	3.9	25	93	0	169	21	25	19	33	1.97
55838514--55838569	22	2.5	22	85	5	78	16	23	16	44	1.86
55839829--55839948	49	2.5	48	86	5	163	25	14	28	31	1.94
55846741--55846777	9	4.1	9	85	0	56	72	0	2	24	0.97
55846737--55846776	18	2.2	19	90	4	64	72	0	2	25	0.97
55855252--55855397	60	2.5	56	75	16	143	21	23	15	40	1.90
55855287--55855497	30	7.1	30	74	13	136	23	22	14	39	1.91
55855369--55855440	29	2.4	30	86	2	101	19	26	11	43	1.84
55855428--55855497	29	2.4	29	85	0	95	24	24	12	38	1.90
55859738--55859854	42	2.8	42	80	5	112	24	24	20	29	1.99
55861290--55861383	27	3.5	27	85	2	82	24	18	18	39	1.92
55861294--55861410	54	2.2	53	83	9	139	21	18	19	40	1.92
55861312--55861414	27	3.8	27	92	2	154	21	17	21	39	1.92
55861642--55861677	17	2.1	18	89	5	56	27	38	19	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55870779--55870820	21	2.0	20	82	13	50	23	11	33	30	1.91
55872882--55873229	170	2.0	170	99	0	687	38	12	22	26	1.90
55876553--55876587	12	3.2	11	88	11	54	62	2	25	8	1.38
55884007--55884240	37	5.6	43	77	17	226	35	14	21	28	1.92
55884007--55884240	83	2.9	83	90	1	366	35	14	21	28	1.92
55887479--55887508	9	3.3	9	95	0	51	40	0	0	60	0.97
55891072--55891232	42	3.8	42	73	11	116	31	25	18	25	1.97
55892135--55892190	27	2.1	26	80	9	60	53	7	0	39	1.28
55893057--55893114	30	1.9	30	85	3	80	50	5	20	24	1.69
55894427--55894490	27	2.3	28	91	2	103	28	0	0	71	0.86
55897681--55897715	18	1.9	18	88	0	52	25	5	14	54	1.62
55901467--55901513	24	2.0	24	87	8	69	38	4	27	29	1.76
55903399--55903475	33	2.3	33	84	4	102	38	20	12	27	1.89
55908452--55908550	23	4.3	23	94	0	180	20	21	26	32	1.97
55908680--55908752	38	1.9	37	86	8	103	45	1	21	31	1.61
55914555--55914682	27	4.7	27	82	6	161	42	19	16	21	1.89
55914555--55914695	54	2.6	54	89	2	203	43	18	15	21	1.87
55914872--55914926	26	2.1	26	89	0	83	21	20	23	34	1.97
55921977--55922053	27	2.9	27	84	0	100	38	18	15	27	1.91
55922365--55922435	33	2.1	34	81	2	81	23	22	25	28	2.00
55929201--55929225	13	1.9	13	100	0	50	16	4	0	80	0.87
55931925--55931963	21	2.0	20	85	10	53	28	15	2	53	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55942500--55942544	17	2.6	17	86	13	74	35	8	0	55	1.31
55942478--55942544	34	1.9	36	85	11	95	35	8	0	55	1.32
55942675--55942731	30	1.9	29	89	3	87	31	14	3	50	1.59
55946917--55946997	10	7.9	10	82	12	76	82	9	4	2	0.90
55946923--55946998	9	8.7	9	81	12	63	82	10	5	1	0.87
55947811--55948007	108	1.8	108	87	4	299	24	17	10	47	1.78
55948901--55949679	46	16.9	46	87	4	1052	25	15	25	33	1.95
55948898--55949686	138	5.7	138	91	1	1179	25	15	25	33	1.95
55949900--55950586	128	5.4	128	92	0	1088	32	22	20	25	1.98
55949902--55950532	44	14.8	41	65	16	194	31	22	20	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207