genome.fa.s19.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  14  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4537606--4537654	1	49.0	1	79	0	53	89	8	2	0	0.55
4538732--4538763	16	2.1	16	88	11	50	59	15	3	21	1.50
4538903--4539557	132	5.0	132	92	0	1051	30	19	23	25	1.98
4539014--4539463	44	10.2	44	64	13	156	29	20	24	25	1.99
4539632--4540272	89	7.4	85	70	14	377	28	20	23	28	1.99
4539546--4540390	44	19.5	43	72	11	425	28	20	22	28	1.98
4539670--4540221	89	6.3	88	71	13	390	28	20	23	27	1.99
4539546--4540409	217	4.0	217	92	0	1368	28	20	23	27	1.99
4539714--4540043	173	1.9	173	79	8	368	27	21	23	26	1.99
4539933--4540260	173	1.9	173	82	6	414	28	19	22	29	1.98
4540575--4540687	19	5.8	19	88	4	172	37	9	15	38	1.80
4540576--4540713	40	3.5	40	89	7	192	36	8	14	39	1.77
4540575--4540710	19	6.7	22	77	18	95	36	8	15	38	1.79
4541837--4541870	15	2.3	15	89	0	50	26	8	8	55	1.59
4542149--4542345	98	2.0	98	94	0	349	28	10	24	36	1.88
4542935--4542968	17	2.0	17	88	11	52	70	0	17	11	1.16
4547253--4547367	45	2.6	45	82	12	130	29	18	24	27	1.98
4547167--4547892	44	16.7	44	72	12	387	30	19	21	27	1.98
4547297--4547622	173	1.9	173	81	7	403	30	20	21	26	1.98
4547167--4547887	217	3.3	217	92	0	1156	30	20	21	27	1.98
4547525--4547966	173	2.5	172	79	8	398	30	20	21	26	1.98
4549337--4549372	16	2.4	16	90	9	58	25	0	5	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4549420--4549472	18	2.9	18	83	8	54	32	1	3	62	1.24
4554782--4555046	46	5.7	46	75	15	267	29	29	20	21	1.98
4554789--4555053	93	2.8	93	96	0	485	28	28	20	22	1.99
4554836--4555004	47	3.6	47	80	13	231	28	28	20	22	1.98
4563539--4563747	42	5.0	41	86	4	283	33	21	21	24	1.97
4563540--4563809	42	6.3	44	77	10	143	32	22	19	25	1.97
4564195--4564262	21	3.2	20	85	8	91	5	39	19	35	1.76
4569750--4570166	9	46.7	9	68	17	221	35	1	17	45	1.58
4569766--4569817	25	2.1	25	85	0	68	40	0	15	44	1.46
4569778--4570165	16	23.9	16	71	18	218	34	1	17	46	1.58
4569782--4570165	25	14.4	25	65	20	90	34	1	17	46	1.58
4570042--4570110	12	6.0	12	71	21	58	31	0	15	52	1.44
4570428--4570470	21	2.0	23	90	9	72	32	4	2	60	1.30
4570473--4570528	13	4.3	13	73	24	55	41	0	3	55	1.17
4570908--4570950	22	1.9	22	85	4	59	25	23	4	46	1.71
4572293--4572531	115	2.1	114	92	1	388	33	21	17	27	1.96
4573197--4573248	20	2.6	21	81	6	63	48	36	0	15	1.45
4573808--4574102	115	2.6	115	87	1	423	28	22	21	27	1.99
4574130--4574301	73	2.4	73	79	5	170	31	25	20	23	1.98
4577123--4577195	23	3.2	23	84	3	85	12	19	16	52	1.75
4581113--4581156	3	14.7	3	100	0	88	65	0	0	34	0.93
4582973--4583017	23	2.0	23	100	0	90	31	17	4	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4583826--4583861	17	2.1	18	89	5	56	16	2	2	77	1.00
4592591--4592641	26	2.0	26	100	0	102	15	23	33	27	1.95
4592620--4592775	33	4.6	33	69	24	110	17	20	27	33	1.96
4592515--4592869	102	3.5	103	90	2	536	18	18	29	32	1.95
4594959--4595646	44	15.8	42	73	12	394	30	20	21	27	1.98
4594959--4595592	88	7.3	88	73	10	453	29	20	21	28	1.98
4595270--4595592	133	2.4	132	82	6	341	32	19	20	27	1.97
4595926--4595960	18	1.9	18	88	0	52	28	28	22	20	1.98
4598453--4598477	12	2.1	12	100	0	50	32	28	32	8	1.86
4599654--4599725	37	1.9	37	88	5	110	36	8	29	26	1.86
4602379--4602405	6	4.5	6	100	0	54	70	29	0	0	0.88
4607322--4607472	70	2.2	71	93	2	254	29	25	15	29	1.96
4609327--4609614	42	6.9	41	88	2	317	32	20	21	25	1.97
4609329--4609649	126	2.6	126	82	4	355	31	19	20	28	1.97
4620600--4620627	12	2.3	12	100	0	56	57	7	0	35	1.26
4620981--4621170	45	4.1	47	76	8	160	57	3	5	33	1.39
4620904--4621172	24	11.7	23	69	12	153	55	4	5	34	1.43
4620958--4621126	69	2.5	68	78	10	164	54	4	6	34	1.47
4620904--4621114	114	1.9	114	82	7	268	54	4	6	35	1.45
4630453--4630531	6	12.7	6	81	7	59	43	0	53	3	1.19
4630492--4630531	18	2.2	18	95	0	71	37	0	62	0	0.95
4630487--4630549	18	3.3	18	77	12	63	44	0	53	1	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4646796--4646903	57	1.9	57	92	0	180	25	5	25	43	1.76
4652836--4652903	33	2.1	33	91	0	109	27	5	44	22	1.76
4652846--4652900	16	3.4	16	75	5	56	27	5	41	25	1.77
4659172--4659235	29	2.2	29	94	2	112	31	14	20	34	1.92
4659181--4659242	29	2.1	29	87	0	88	32	14	19	33	1.92
4667445--4667495	21	2.4	21	80	0	57	47	19	21	11	1.81
4667445--4667683	42	5.7	42	84	1	282	48	17	19	13	1.80
4667611--4667678	21	3.2	20	75	8	64	48	17	17	16	1.81
4676625--4676670	23	2.0	23	100	0	92	39	30	8	21	1.84
4676937--4677250	41	7.7	41	81	5	357	27	19	23	29	1.98
4676937--4677250	123	2.6	123	83	5	402	27	19	23	29	1.98
4677578--4677614	14	2.6	14	95	0	65	21	0	29	48	1.50
4677837--4677874	13	2.9	13	84	11	51	26	0	34	39	1.57
4677780--4677955	81	2.1	83	84	4	232	32	1	24	42	1.62
4679890--4679915	13	2.0	13	100	0	52	30	15	0	53	1.42
4680932--4681033	41	2.5	40	87	6	141	27	25	19	27	1.99
4680932--4681048	41	2.9	41	82	5	112	28	25	20	25	1.99
4688463--4688564	41	2.5	41	88	3	143	27	24	19	28	1.99
4688463--4688579	41	2.9	41	80	5	103	28	24	20	26	1.99
4693904--4693949	16	2.6	19	80	20	71	32	10	26	30	1.90
4701202--4701244	6	7.2	6	100	0	86	34	16	16	32	1.91
4701996--4702072	37	2.1	37	95	0	136	27	14	27	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4703422--4703556	71	1.9	70	83	4	173	20	41	23	14	1.89
4705006--4705074	22	3.1	22	77	8	77	43	15	21	18	1.88
4708886--4708948	11	5.9	11	83	9	78	55	0	1	42	1.09
4708886--4708948	5	11.8	5	79	14	56	55	0	1	42	1.09
4710235--4710273	6	6.5	6	84	0	51	76	0	5	17	0.96
4715799--4715859	19	3.1	19	71	17	52	62	6	1	29	1.30
4718876--4718924	20	2.5	20	81	15	66	12	24	6	57	1.58
4719216--4719322	50	2.1	50	80	0	124	22	30	20	26	1.98
4719357--4719428	36	2.0	36	94	0	126	20	23	18	37	1.94
4723565--4723605	18	2.4	17	84	8	55	14	31	39	14	1.87
4728556--4728624	21	3.1	21	73	17	68	55	10	11	23	1.66
4738176--4738282	40	2.7	40	73	7	99	14	28	18	39	1.89
4746314--4746373	18	3.3	18	68	9	59	43	0	6	50	1.28
4746306--4746382	36	2.1	36	97	0	145	49	0	6	44	1.28
4746738--4746803	28	2.4	28	92	5	107	28	22	7	40	1.81
4749228--4749262	17	2.0	18	94	5	63	14	40	28	17	1.88
4756893--4756927	18	1.9	18	88	0	52	11	40	31	17	1.85
4758698--4758740	20	2.1	21	91	4	70	37	2	0	60	1.10
4758760--4758848	29	3.1	29	77	3	81	44	4	8	41	1.56
4760228--4760283	21	2.8	19	79	12	58	26	1	7	64	1.29
4772071--4773208	132	8.6	132	95	0	1916	30	19	25	24	1.98
4775811--4775914	41	2.5	41	92	0	145	24	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4777963--4778154	98	2.0	98	93	0	330	27	10	24	36	1.89
4781012--4781116	27	3.9	27	81	7	115	44	21	15	18	1.86
4781005--4781116	54	2.1	54	88	3	163	43	22	16	17	1.87
4782226--4782268	19	2.3	19	95	0	77	18	48	11	20	1.79
4797882--4797941	26	2.3	26	85	2	75	31	5	3	60	1.35
4798280--4798345	24	2.8	24	82	8	66	45	0	0	54	0.99
4798304--4798336	11	3.2	11	83	16	52	51	0	0	48	1.00
4806361--4806500	74	1.9	74	88	8	214	35	19	6	38	1.77
4808606--4808637	3	10.7	3	100	0	64	34	0	0	65	0.93
4813124--4813245	40	3.0	40	77	12	142	71	6	11	10	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207