genome.fa.s19.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  117  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35218247--35218327	28	2.9	28	88	0	117	23	19	22	34	1.96
35218521--35218549	6	5.0	6	95	4	51	31	0	0	68	0.89
35221478--35221718	50	4.8	50	87	0	320	24	21	31	22	1.98
35223131--35223196	20	3.3	20	77	8	71	42	18	25	13	1.87
35223119--35223211	40	2.3	40	84	0	123	39	21	25	12	1.89
35230683--35230725	21	2.0	22	81	4	52	58	6	6	27	1.50
35236287--35236337	25	2.0	25	100	0	102	43	3	11	41	1.60
35237170--35237220	21	2.4	21	84	12	61	74	1	5	17	1.11
35237170--35237220	10	4.9	10	79	9	57	74	1	5	17	1.11
35237170--35237203	17	2.1	17	88	5	52	76	2	5	14	1.09
35237831--35238223	138	2.7	140	83	10	447	42	8	3	44	1.53
35238823--35238853	16	1.9	16	100	0	62	51	9	19	19	1.74
35238860--35239111	42	6.1	42	88	1	312	36	23	20	20	1.95
35248921--35249579	332	2.0	333	98	0	1275	32	23	13	30	1.93
35254058--35254211	27	5.7	27	77	0	146	33	14	22	30	1.93
35257957--35257995	17	2.2	18	90	9	62	20	5	0	74	1.01
35261798--35261849	27	1.9	27	88	0	77	38	5	17	38	1.74
35261955--35261992	18	2.1	19	85	14	53	23	5	7	63	1.42
35263645--35263720	23	3.3	23	96	0	143	21	21	26	31	1.98
35270711--35270749	18	2.2	17	86	13	53	33	0	20	46	1.51
35270974--35271049	23	3.3	23	96	0	143	21	21	26	31	1.98
35274767--35274936	27	6.3	27	83	0	205	33	12	22	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35275940--35275988	22	2.2	22	78	7	55	10	20	2	67	1.30
35302428--35302456	4	7.2	4	100	0	58	24	24	0	51	1.48
35306746--35306882	42	3.5	40	70	17	126	21	16	27	34	1.95
35306709--35306884	75	2.3	75	92	0	289	22	18	26	32	1.97
35306861--35306937	27	2.9	27	96	0	145	16	23	31	28	1.96
35309089--35309138	25	2.0	26	92	4	84	28	38	20	14	1.91
35309191--35309386	100	2.1	89	85	10	257	33	30	19	16	1.94
35321273--35321313	21	2.0	20	85	4	55	36	4	7	51	1.51
35324803--35324940	42	3.5	42	68	21	134	34	27	17	21	1.95
35324704--35324902	100	2.0	102	88	2	303	32	27	18	21	1.97
35324801--35324957	76	2.1	76	91	3	255	34	26	19	20	1.96
35324801--35324970	75	2.3	75	86	10	256	34	25	18	20	1.96
35332129--35332180	26	2.0	26	96	0	95	13	23	34	28	1.92
35332232--35332283	27	1.9	27	92	0	86	11	25	36	26	1.90
35332066--35332383	104	3.0	108	82	15	372	19	20	28	31	1.97
35332062--35332411	105	3.4	101	87	9	507	19	20	28	30	1.97
35339058--35339107	25	2.0	25	96	0	91	14	24	32	30	1.94
35338984--35339189	103	2.0	100	88	8	310	18	18	30	33	1.95
35345475--35345611	42	3.5	42	72	17	157	21	16	27	34	1.95
35345441--35345613	75	2.3	75	93	2	294	20	17	27	34	1.95
35345515--35345712	102	1.9	102	91	0	324	20	19	27	32	1.97
35345410--35345749	177	1.9	177	88	0	518	21	20	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35349143--35349199	20	3.1	19	80	9	64	59	7	3	29	1.40
35357884--35357910	14	1.9	14	100	0	54	14	25	22	37	1.93
35366310--35366509	87	2.3	88	83	10	241	37	23	10	29	1.88
35366752--35366784	11	3.1	11	86	4	50	63	0	3	33	1.10
35366870--35366932	10	6.7	10	81	17	64	41	1	0	57	1.08
35366878--35366936	18	3.3	17	79	11	73	37	1	0	61	1.07
35366956--35366989	8	4.1	8	88	7	50	26	2	0	70	1.01
35366931--35366987	20	2.9	20	75	12	55	26	3	0	70	1.03
35366933--35366978	20	2.2	21	84	7	58	19	4	0	76	0.96
35367014--35367038	10	2.5	10	100	0	50	20	0	0	80	0.72
35367058--35367266	87	2.4	90	86	5	318	30	9	22	37	1.86
35371776--35371870	25	3.9	24	71	14	77	18	27	22	31	1.97
35371776--35371869	24	3.8	25	73	4	84	19	27	21	31	1.97
35379105--35379149	23	2.0	23	86	4	65	40	4	2	53	1.33
35379315--35379349	17	2.0	18	88	5	54	60	2	5	31	1.35
35380471--35380530	30	2.0	30	93	0	102	36	0	43	20	1.52
35380579--35380615	18	2.1	18	94	0	65	29	5	13	51	1.63
35380669--35380699	9	3.4	9	90	0	53	38	22	12	25	1.90
35382332--35382927	198	3.0	199	95	1	1061	38	16	15	29	1.89
35389151--35389196	9	5.1	9	83	0	56	21	36	0	41	1.54
35389151--35389196	18	2.6	18	89	0	74	21	36	0	41	1.54
35389408--35389433	10	2.6	10	100	0	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35394123--35394155	12	2.8	12	90	0	57	39	36	9	15	1.79
35394351--35394403	6	8.8	6	87	0	79	43	0	39	16	1.49
35395494--35395518	8	3.1	8	100	0	50	24	0	0	76	0.80
35395730--35395780	26	2.0	25	81	14	59	21	9	7	60	1.53
35402712--35402775	21	3.0	21	83	0	83	50	18	21	9	1.75
35405213--35405257	14	3.0	14	76	17	54	31	13	8	46	1.74
35410298--35410341	18	2.4	18	88	0	70	45	9	11	34	1.72
35416373--35416406	17	2.0	17	88	0	50	61	5	11	20	1.50
35420217--35420458	50	4.7	50	79	3	198	27	22	26	23	2.00
35425634--35425659	11	2.4	11	100	0	52	53	0	26	19	1.45
35425797--35425831	17	2.1	17	89	5	54	77	14	0	8	0.99
35428318--35428380	31	2.0	31	100	0	126	31	19	9	39	1.83
35428436--35428688	46	5.5	46	83	4	296	18	20	15	45	1.85
35428425--35428731	92	3.4	93	80	3	302	18	20	15	44	1.86
35428768--35428874	45	2.4	45	82	0	142	20	16	17	44	1.86
35430506--35430539	15	2.4	14	90	5	50	76	5	2	14	1.09
35433463--35433640	27	6.6	27	85	3	205	29	29	14	26	1.95
35433463--35433640	54	3.3	54	85	3	232	29	29	14	26	1.95
35433484--35433639	81	1.9	82	88	3	235	29	29	14	26	1.95
35454290--35454320	16	1.9	16	100	0	62	32	6	32	29	1.83
35456602--35456697	28	3.4	28	85	2	131	33	22	21	21	1.97
35456585--35456697	56	1.9	56	82	8	136	30	23	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35457054--35457291	27	8.8	27	88	1	284	17	18	20	43	1.88
35457983--35458021	5	7.6	5	88	5	60	58	0	41	0	0.98
35468177--35468271	45	2.1	45	96	0	172	30	23	18	27	1.98
35468268--35468453	51	3.7	50	81	3	212	30	28	16	24	1.97
35468275--35468463	101	1.8	102	87	5	283	31	28	16	24	1.96
35471781--35471809	15	2.0	15	93	6	51	55	13	24	6	1.63
35471897--35471935	18	2.2	18	90	9	62	20	15	0	64	1.30
35471915--35471980	12	5.3	12	74	13	53	12	18	3	66	1.36
35471971--35472010	6	6.7	6	82	0	53	5	17	2	75	1.10
35471971--35472022	24	2.2	24	82	6	61	7	19	5	67	1.36
35476514--35476558	24	1.9	24	86	4	65	42	6	33	17	1.76
35487500--35487785	50	5.6	50	77	3	207	23	28	20	27	1.99
35499488--35499730	50	4.7	50	86	3	315	21	28	22	26	1.99
35500069--35500128	30	2.0	30	80	3	68	31	26	6	35	1.82
35504104--35504431	27	12.4	27	76	7	138	42	20	16	20	1.89
35504115--35504220	55	1.9	55	88	0	158	45	20	13	20	1.84
35504248--35504420	27	6.4	27	83	5	206	42	20	16	20	1.89
35504245--35504420	81	2.2	81	85	6	241	43	20	15	20	1.88
35504659--35504733	26	2.9	26	80	6	89	16	25	25	33	1.95
35504835--35504984	28	5.2	28	82	5	167	24	25	22	27	2.00
35506415--35506524	41	2.9	36	75	21	134	29	23	29	18	1.98
35510345--35510378	14	2.3	15	90	5	52	14	5	2	76	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35519346--35519402	26	2.2	26	96	0	105	33	3	26	36	1.74
35519430--35519492	20	3.3	20	64	28	55	41	7	19	31	1.80
35519417--35519493	37	2.1	37	95	0	136	41	9	19	29	1.82
35543779--35543818	20	2.0	20	90	0	62	27	10	12	50	1.72
35543758--35543834	14	5.0	15	72	20	61	32	9	16	41	1.80
35545150--35545226	35	2.2	36	90	4	129	53	16	2	27	1.57
35545194--35545262	27	2.5	28	83	6	88	53	20	2	23	1.59
35547359--35547418	29	2.0	31	80	6	70	48	8	5	38	1.55
35550567--35550676	54	2.0	54	91	3	177	47	13	6	32	1.68
35554714--35554811	27	3.6	27	81	0	124	19	10	29	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207