genome.fa.s19.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  129  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39395213--39395362	70	2.1	71	92	1	248	23	16	30	30	1.96
39395323--39395374	26	2.0	26	92	0	86	15	21	34	28	1.94
39402625--39402848	104	2.2	104	93	1	378	17	19	31	31	1.95
39402767--39402918	71	2.1	72	92	1	252	23	17	29	30	1.97
39415067--39415100	17	2.0	17	94	0	59	29	32	11	26	1.92
39418937--39419122	40	4.7	40	86	5	218	26	22	26	25	2.00
39418990--39419155	80	2.1	79	81	9	187	28	20	26	24	1.99
39424577--39424687	40	2.8	40	80	0	123	20	30	17	31	1.95
39431536--39431711	56	3.1	56	100	0	352	46	9	22	22	1.80
39431536--39431751	112	1.9	112	82	7	269	50	8	20	20	1.74
39440469--39440619	50	2.9	50	86	5	176	27	20	30	21	1.98
39447567--39447759	50	3.7	53	76	11	175	25	21	27	24	1.99
39449292--39449537	40	6.1	40	85	3	316	19	29	18	32	1.95
39449292--39449537	80	3.1	79	88	2	350	19	29	18	32	1.95
39449429--39449492	20	3.2	20	65	0	56	15	34	17	32	1.91
39451592--39451738	20	7.3	20	74	6	102	11	31	19	37	1.88
39451622--39451749	60	2.1	62	81	5	154	12	31	19	36	1.89
39456337--39456516	50	3.5	50	81	4	180	27	23	27	21	1.99
39456754--39457092	169	2.0	169	98	0	651	37	6	20	34	1.80
39463183--39463304	22	5.3	22	62	21	61	25	29	11	33	1.91
39463155--39463657	47	10.6	47	92	2	753	27	29	9	33	1.88
39465099--39465218	56	2.1	56	98	0	231	22	23	9	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39474514--39474616	23	4.5	23	82	8	111	46	14	5	33	1.68
39478270--39478573	154	2.0	154	90	1	475	23	19	18	38	1.93
39485557--39485616	10	6.6	9	73	17	52	31	1	1	65	1.13
39485555--39485606	18	2.9	18	81	16	63	28	1	1	67	1.12
39485557--39485637	9	8.6	10	67	16	57	29	2	2	65	1.18
39485827--39485999	95	1.8	93	82	2	220	33	6	13	45	1.71
39490639--39490675	19	1.9	19	89	10	58	2	8	18	70	1.25
39492386--39492421	17	2.1	17	89	5	54	19	2	11	66	1.35
39503551--39503845	51	5.8	50	78	7	301	30	26	14	28	1.95
39503551--39503845	102	2.9	102	89	3	418	30	26	14	28	1.95
39503552--39503837	153	1.9	151	83	6	371	30	26	13	28	1.95
39504565--39505052	249	2.0	249	96	0	906	39	19	16	25	1.91
39508844--39508875	16	2.0	16	93	0	55	25	15	0	59	1.36
39509093--39509296	51	4.0	51	78	8	245	29	27	17	24	1.97
39509101--39509285	101	1.8	102	92	3	320	30	26	18	24	1.98
39509097--39509319	101	2.2	103	82	7	287	30	27	16	25	1.97
39524317--39524416	49	2.0	49	100	0	200	41	16	29	14	1.87
39529301--39529416	38	3.0	39	87	5	164	33	7	12	46	1.70
39535730--39535777	24	2.0	24	91	0	78	18	10	20	50	1.76
39539639--39539696	29	2.0	29	100	0	116	44	17	6	31	1.75
39542290--39542377	25	3.6	25	81	6	99	27	21	23	27	1.99
39542315--39542392	25	3.2	25	81	5	70	29	20	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39551297--39551427	55	2.3	55	78	10	131	34	12	28	24	1.92
39551297--39551451	28	5.6	28	80	4	143	35	13	25	25	1.93
39558282--39558666	29	13.2	29	75	4	292	38	12	25	24	1.90
39562493--39562526	17	1.9	18	94	5	61	41	5	14	38	1.70
39565791--39565913	29	4.2	30	78	3	133	35	14	30	19	1.92
39565791--39565913	59	2.1	59	85	0	165	35	14	30	19	1.92
39568820--39568997	27	6.6	27	83	3	196	26	14	29	29	1.95
39568820--39568997	54	3.3	55	84	4	236	26	14	29	29	1.95
39576836--39576897	30	2.1	30	100	0	124	43	19	12	24	1.86
39577116--39577293	27	6.6	27	83	3	196	26	14	29	29	1.95
39577116--39577293	54	3.3	55	84	4	236	26	14	29	29	1.95
39582956--39583077	40	3.1	39	85	2	145	33	18	27	20	1.96
39586365--39586419	16	3.2	18	80	19	64	25	0	27	47	1.52
39596994--39597082	44	2.0	44	95	0	160	34	12	19	33	1.89
39601384--39601515	27	4.9	27	84	0	138	21	17	21	39	1.92
39601386--39601515	54	2.4	54	89	0	188	21	17	21	39	1.93
39609487--39609519	17	1.9	17	88	11	50	51	15	0	33	1.43
39615475--39615620	38	3.8	39	78	9	131	45	11	8	34	1.72
39618006--39618234	112	2.0	112	94	0	395	22	24	16	36	1.94
39618781--39618840	22	2.7	21	80	15	59	3	23	6	66	1.30
39622014--39622102	38	2.3	39	84	9	121	46	11	7	34	1.69
39626394--39626617	104	2.2	104	93	1	378	17	19	31	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39626536--39626687	71	2.1	72	92	1	252	23	17	29	30	1.97
39634024--39634074	26	2.0	26	96	0	93	11	23	35	29	1.90
39633947--39634168	103	2.2	103	92	3	367	18	18	31	31	1.95
39634087--39634238	71	2.1	72	92	1	252	23	17	29	30	1.97
39639836--39639870	17	2.1	17	88	0	52	8	14	20	57	1.63
39640757--39640829	31	2.4	31	86	4	94	36	9	1	52	1.43
39643947--39643983	9	4.1	9	89	0	56	32	8	13	45	1.73
39647113--39647163	24	2.0	26	81	7	61	37	5	3	52	1.44
39647443--39647854	108	3.8	108	88	2	560	29	17	19	32	1.95
39658909--39659177	41	6.3	42	76	8	193	27	20	21	29	1.98
39658817--39659177	44	8.4	44	74	6	283	29	20	22	27	1.98
39658868--39659103	131	1.8	131	85	1	339	29	19	22	28	1.98
39658996--39659177	85	2.1	85	93	0	310	28	22	20	28	1.99
39661121--39661171	24	2.0	26	81	7	61	37	5	3	52	1.44
39661464--39661862	108	3.7	108	90	3	554	30	18	19	32	1.95
39667233--39667274	21	2.0	21	95	0	75	4	35	23	35	1.76
39668403--39668433	16	1.9	16	93	0	53	16	9	12	61	1.56
39669639--39669802	72	2.3	72	88	4	233	25	5	12	56	1.57
39671853--39671916	13	4.9	13	83	7	85	37	25	6	31	1.81
39672265--39672293	10	2.7	11	89	10	51	20	6	0	72	1.07
39674532--39674696	35	4.7	35	86	0	222	25	27	15	31	1.96
39674525--39674696	70	2.5	70	88	1	247	25	26	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39676873--39676904	12	2.5	13	95	5	57	28	3	0	68	1.04
39677075--39677133	21	2.8	21	76	2	64	30	1	5	62	1.26
39678538--39678604	28	2.3	30	80	10	77	37	5	2	53	1.41
39687497--39687543	11	4.4	11	97	2	87	48	10	0	40	1.38
39688326--39688351	13	2.0	13	100	0	52	53	15	15	15	1.73
39706776--39706809	15	2.2	16	89	5	52	41	0	5	52	1.25
39711354--39711397	22	2.0	22	95	0	79	50	15	13	20	1.78
39722397--39722424	13	2.2	13	100	0	56	17	0	28	53	1.44
39725007--39725184	27	6.6	27	83	3	205	26	15	28	29	1.96
39725008--39725163	82	1.9	81	88	3	233	26	15	28	29	1.96
39725004--39725184	82	2.2	81	83	2	229	27	15	27	29	1.96
39729852--39729917	20	3.3	20	68	19	57	19	6	31	42	1.76
39730654--39730728	28	2.7	29	68	14	75	41	29	6	22	1.79
39730711--39730798	28	3.2	28	72	4	81	37	34	6	21	1.80
39730751--39730815	13	4.8	13	75	5	58	41	33	6	18	1.75
39732221--39732273	24	2.2	25	82	3	63	47	1	28	22	1.62
39739983--39740036	8	6.8	8	86	0	63	27	27	11	33	1.91
39743702--39743778	33	2.3	34	86	4	102	46	18	6	28	1.73
39744194--39744248	24	2.2	24	90	3	83	38	0	40	21	1.54
39744679--39744725	24	2.0	24	83	8	60	53	6	6	34	1.52
39756827--39756856	14	2.1	14	93	0	51	53	6	3	36	1.44
39764763--39765480	44	16.5	44	69	11	253	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39764519--39764957	217	2.0	218	80	3	490	29	24	17	28	1.97
39764542--39765480	305	3.1	305	95	0	1653	28	24	18	28	1.98
39764842--39765262	217	1.9	217	81	4	501	29	25	17	27	1.98
39764759--39765480	88	8.3	88	73	10	410	28	24	18	28	1.98
39765472--39765808	127	2.6	128	89	0	541	26	24	18	31	1.97
39767102--39767135	7	4.9	7	86	13	52	14	14	0	70	1.17
39767100--39767132	14	2.4	14	95	5	59	15	15	0	69	1.19
39767936--39767960	13	1.9	13	100	0	50	12	0	0	88	0.53
39774423--39774470	23	2.1	23	84	0	60	18	4	35	41	1.70
39783674--39783712	21	1.9	20	89	5	60	56	0	2	41	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207