genome.fa.s19.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  203  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61055314--61055358	22	2.0	22	95	0	81	57	11	20	11	1.63
61055475--61055517	22	2.0	22	100	0	86	65	11	13	9	1.48
61055256--61055670	164	2.5	164	93	4	677	46	16	10	26	1.79
61055573--61055607	11	3.2	11	100	0	70	34	8	11	45	1.71
61065270--61065303	16	2.1	16	88	0	50	50	14	17	17	1.79
61068098--61068138	21	2.0	21	90	0	64	29	21	29	19	1.98
61070044--61070077	16	2.1	16	88	0	50	50	14	17	17	1.79
61071571--61071625	27	2.0	27	96	0	101	40	23	9	27	1.85
61084957--61084982	3	8.7	3	100	0	52	65	0	0	34	0.93
61086275--61086948	98	6.9	98	93	0	1060	21	21	24	32	1.98
61086318--61086947	50	12.9	48	67	7	309	22	21	24	32	1.98
61087721--61087768	25	1.9	25	100	0	96	31	16	12	39	1.86
61088306--61088341	15	2.4	15	95	0	63	8	22	13	55	1.65
61103572--61103616	20	2.2	20	88	0	63	22	28	42	6	1.79
61116433--61116500	31	2.2	31	89	5	102	30	5	10	52	1.59
61116867--61116915	24	2.0	24	100	0	98	51	16	4	28	1.63
61118110--61118166	16	3.2	16	77	20	51	33	0	1	64	1.04
61118098--61118168	25	2.9	24	76	15	72	35	0	1	63	1.03
61118114--61118174	27	2.3	27	75	16	65	34	0	3	62	1.12
61129729--61129780	21	2.5	21	90	0	77	50	5	38	5	1.51
61130960--61131008	22	2.2	22	88	0	71	36	4	14	44	1.64
61133537--61133585	24	2.0	24	100	0	98	32	16	8	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61141002--61141042	22	1.9	21	85	5	55	21	34	12	31	1.91
61142670--61142724	22	2.3	25	78	9	62	69	5	21	3	1.25
61148213--61148269	29	1.9	30	85	3	80	31	14	17	36	1.89
61148443--61148522	29	2.7	29	84	5	88	45	15	7	32	1.74
61149387--61149411	13	1.9	13	100	0	50	48	16	0	36	1.46
61157980--61158019	20	2.0	20	85	0	53	57	0	5	37	1.21
61167910--61167951	21	1.9	23	85	9	61	52	2	0	45	1.13
61167941--61168012	24	3.0	24	82	11	85	58	1	0	40	1.07
61171363--61171865	251	2.0	244	83	8	615	48	14	11	25	1.77
61172454--61172526	28	2.7	26	74	6	65	31	5	2	60	1.34
61177650--61177908	91	2.8	91	98	0	491	47	3	2	47	1.32
61178227--61178331	44	2.5	40	76	15	113	31	29	4	34	1.78
61178225--61178334	45	2.6	44	81	8	131	31	29	5	33	1.80
61178313--61178350	16	2.4	16	90	0	58	34	34	0	31	1.58
61183166--61183211	20	2.4	19	82	13	58	60	4	0	34	1.16
61187993--61188053	29	2.0	31	87	9	90	45	1	0	52	1.10
61187997--61188037	20	2.0	21	85	9	57	46	0	0	53	1.00
61196012--61196042	11	2.8	11	90	0	53	67	6	0	25	1.14
61196155--61196205	13	3.9	13	77	10	59	60	1	0	37	1.08
61215352--61215419	31	2.2	32	83	2	84	44	7	19	29	1.77
61218466--61218521	26	2.2	26	83	3	69	53	10	10	25	1.67
61224175--61224219	2	22.5	2	100	0	90	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61244470--61244844	195	1.9	194	85	4	515	43	19	7	29	1.79
61247695--61247756	29	2.1	29	81	0	70	51	6	1	40	1.37
61249127--61249282	79	2.0	79	86	5	217	33	8	17	40	1.80
61260153--61260317	57	2.9	57	87	1	231	38	18	20	22	1.94
61267917--61267962	23	2.0	23	82	4	56	6	8	17	67	1.39
61275744--61275815	28	2.5	27	82	13	74	50	4	5	40	1.45
61276446--61276471	11	2.4	11	100	0	52	61	0	0	38	0.96
61283279--61283323	22	2.0	22	91	0	72	33	2	15	48	1.57
61287057--61287101	22	2.0	22	91	0	72	33	2	15	48	1.57
61297049--61297073	11	2.3	11	100	0	50	52	0	0	48	1.00
61300077--61300148	33	2.2	32	82	9	83	41	1	2	54	1.23
61300678--61300709	16	1.9	17	93	6	57	31	12	0	56	1.37
61301102--61301813	233	3.0	235	89	4	993	19	13	13	53	1.71
61303152--61303187	18	2.0	18	100	0	72	44	5	16	33	1.71
61307426--61308039	104	5.8	104	74	9	521	29	11	18	39	1.87
61307457--61308148	211	3.3	212	89	2	1009	29	11	18	40	1.86
61309900--61309959	30	2.0	31	83	9	79	40	11	15	33	1.83
61311204--61311243	4	10.0	4	100	0	80	25	0	25	50	1.50
61312610--61312651	7	5.9	7	94	5	75	88	0	0	11	0.53
61312610--61312652	22	2.0	22	100	0	86	88	0	0	11	0.52
61312609--61312651	15	2.9	15	96	3	79	88	0	0	11	0.52
61324810--61324853	23	1.9	23	90	0	70	43	4	9	43	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61332830--61332873	23	1.9	23	90	0	70	43	4	9	43	1.56
61334624--61334672	25	2.0	25	88	8	73	61	2	2	34	1.19
61335589--61335617	2	14.5	2	100	0	58	51	0	0	48	1.00
61338440--61338478	14	2.7	15	84	4	53	64	12	2	20	1.40
61344571--61344728	83	1.9	83	93	0	271	45	5	9	39	1.60
61348050--61348090	21	2.0	21	90	0	64	29	21	29	19	1.98
61353455--61353494	14	2.7	15	84	3	55	62	15	2	20	1.43
61354801--61354840	20	2.0	20	85	0	53	22	5	2	70	1.19
61354926--61354967	4	10.5	4	85	10	59	23	2	2	71	1.10
61356062--61356090	13	2.1	14	93	6	51	55	0	6	37	1.27
61356244--61356315	29	2.5	30	82	14	91	48	2	4	44	1.36
61358954--61358983	9	3.3	9	95	0	51	50	3	6	40	1.45
61359383--61359444	27	2.3	27	91	0	97	11	37	29	22	1.89
61359847--61359910	32	2.0	32	84	3	83	25	1	7	65	1.28
61360593--61360659	33	2.0	33	97	0	125	38	19	11	29	1.88
61367595--61367671	29	2.7	29	80	9	86	38	0	2	58	1.12
61372934--61372985	28	1.9	26	88	7	77	34	0	5	59	1.21
61376288--61376349	31	2.0	31	90	0	97	43	6	20	29	1.77
61377946--61377996	19	2.6	20	75	12	61	19	1	0	78	0.85
61377954--61378010	27	2.1	28	87	6	82	24	1	0	73	0.92
61379586--61379621	3	12.0	3	100	0	72	33	0	0	66	0.92
61381663--61381759	33	2.8	35	72	20	89	44	3	1	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61382266--61382290	7	3.6	7	100	0	50	12	0	0	88	0.53
61382279--61382351	20	3.6	20	72	17	69	31	2	0	65	1.06
61382307--61382413	11	10.4	10	67	19	51	32	2	0	63	1.15
61382284--61382389	39	2.7	39	85	5	133	34	2	0	62	1.10
61382286--61382355	22	3.3	21	78	13	74	34	2	0	62	1.10
61385801--61385852	22	2.2	24	83	6	72	9	23	0	67	1.20
61387756--61387937	82	2.2	83	87	3	269	45	9	8	36	1.69
61391180--61391220	21	2.0	21	90	0	64	19	29	21	29	1.98
61396076--61396191	61	1.9	60	85	1	160	40	15	19	24	1.90
61397365--61397403	19	2.1	19	85	0	51	30	10	5	53	1.56
61398586--61398649	19	3.3	19	77	4	56	54	6	1	37	1.35
61406683--61406716	17	2.0	17	88	11	52	50	14	11	23	1.76
61408363--61408387	5	5.0	5	100	0	50	80	0	0	20	0.72
61409627--61409675	19	2.7	19	79	17	59	59	0	2	38	1.09
61411387--61411413	6	4.5	6	100	0	54	0	70	0	29	0.88
61414683--61414732	26	1.9	26	95	0	91	12	24	34	30	1.91
61414604--61414865	103	2.6	101	89	3	400	19	19	30	30	1.97
61417934--61417966	16	2.1	16	88	11	50	0	18	0	81	0.68
61422591--61422662	30	2.4	30	88	2	108	31	15	15	37	1.88
61448168--61448199	4	8.0	4	92	0	55	25	3	25	46	1.67
61450989--61451047	21	2.7	23	82	10	63	52	0	0	47	1.00
61451024--61451059	17	2.1	17	89	0	54	44	2	2	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61455835--61455893	14	4.2	14	73	16	50	57	1	1	38	1.19
61455849--61455894	14	3.2	15	72	9	51	60	2	2	34	1.21
61455849--61455909	28	2.2	28	82	5	72	59	1	3	36	1.24
61460150--61460193	16	2.9	15	76	6	52	61	0	2	36	1.09
61465200--61465225	2	13.0	2	100	0	52	50	50	0	0	1.00
61465626--61465658	2	16.5	2	100	0	66	51	0	0	48	1.00
61466163--61466232	20	3.4	21	73	15	74	31	24	17	27	1.97
61471251--61471412	42	3.8	42	84	5	191	31	20	23	24	1.98
61471251--61471436	42	4.3	43	78	11	177	29	19	24	26	1.98
61471829--61471868	12	3.3	12	85	0	53	5	37	15	42	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207