genome.fa.s19.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  185  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56486937--56486989	25	2.1	25	92	0	88	37	16	13	32	1.88
56491483--56491507	13	1.9	13	100	0	50	68	0	16	16	1.22
56492226--56492305	3	26.3	3	87	7	117	35	0	1	63	1.02
56493476--56493527	16	3.2	16	97	0	95	26	0	34	38	1.57
56493763--56493797	18	2.0	17	88	5	52	54	0	0	45	0.99
56493652--56493966	157	2.0	157	97	0	594	44	3	4	47	1.40
56493900--56493941	15	2.7	16	82	14	52	52	2	0	45	1.13
56493909--56493950	15	2.9	15	82	10	52	52	0	0	47	1.00
56493898--56494195	120	2.5	121	90	6	464	48	5	3	42	1.40
56493702--56494032	157	2.1	155	83	6	378	46	4	3	45	1.41
56494019--56494070	15	3.6	15	80	12	56	53	1	0	44	1.11
56494211--56494420	93	2.3	91	85	7	255	45	3	4	46	1.41
56497581--56497696	30	3.9	29	75	8	117	32	23	5	38	1.77
56497593--56497725	30	4.5	29	74	12	119	32	24	3	39	1.73
56497559--56497689	59	2.2	60	81	6	142	35	20	3	40	1.71
56498238--56498296	4	15.5	4	74	22	56	76	0	23	0	0.79
56498238--56498300	11	6.0	11	83	5	78	77	0	22	0	0.76
56499293--56499364	35	2.1	34	89	2	108	30	11	8	50	1.67
56499365--56499418	19	2.7	21	83	13	78	35	12	11	40	1.79
56499292--56499438	18	7.7	18	74	17	127	31	12	9	46	1.73
56506394--56506432	19	2.1	18	85	4	51	64	5	2	28	1.28
56515838--56515975	40	3.5	40	76	1	134	39	18	19	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56520289--56520334	24	1.9	24	86	8	67	32	4	2	60	1.28
56522547--56522597	16	2.9	18	70	24	54	23	7	1	66	1.28
56526961--56527005	22	2.0	22	100	0	90	26	8	17	46	1.78
56533696--56533720	12	2.1	12	100	0	50	76	0	0	24	0.80
56544243--56544271	5	5.8	5	100	0	58	20	0	0	79	0.74
56545443--56545504	30	2.0	31	87	9	92	43	1	4	50	1.33
56545786--56545818	17	2.0	17	88	5	50	45	3	0	51	1.16
56552131--56552160	15	1.9	16	93	6	53	50	3	0	46	1.18
56552261--56552308	15	3.3	15	72	16	55	35	12	0	52	1.40
56552252--56552309	29	2.0	29	100	0	116	37	10	0	51	1.36
56552252--56552299	15	3.3	15	72	16	55	41	8	0	50	1.33
56553007--56553054	21	2.2	22	85	10	64	45	0	2	52	1.12
56558531--56558691	61	2.7	60	80	7	191	26	24	10	38	1.88
56561905--56561978	29	2.5	29	82	4	85	25	13	12	48	1.77
56563080--56563145	33	2.0	33	96	0	123	39	7	24	28	1.82
56567644--56567687	19	2.3	20	84	7	56	27	20	11	40	1.86
56570239--56570277	8	5.0	8	87	6	62	84	2	0	12	0.72
56570241--56570310	15	4.9	14	74	11	61	80	4	5	10	1.02
56570293--56570334	6	7.0	6	84	10	59	80	0	19	0	0.70
56570665--56570709	14	3.2	14	81	9	56	66	0	20	13	1.24
56571962--56572348	88	4.4	88	91	1	544	27	21	24	25	1.99
56571962--56572433	175	2.7	176	83	3	571	28	21	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56572153--56572289	44	3.1	44	65	19	122	27	21	27	24	1.99
56572185--56572321	44	3.1	44	63	19	104	25	18	27	28	1.98
56572476--56572711	83	2.8	84	86	4	296	33	23	19	23	1.97
56572476--56572804	44	7.8	44	73	13	264	33	22	20	23	1.97
56572520--56572805	128	2.2	128	85	4	382	34	21	20	23	1.97
56572646--56572855	84	2.5	84	84	0	294	34	20	20	24	1.97
56575755--56575809	21	2.5	23	77	17	62	34	5	16	43	1.71
56578379--56578473	40	2.3	40	90	3	145	0	28	8	63	1.24
56579552--56579824	143	1.9	143	95	1	494	38	20	15	26	1.91
56581099--56581144	16	2.9	16	80	0	56	28	0	26	45	1.54
56584868--56584900	17	1.9	17	93	0	57	39	30	9	21	1.84
56584886--56584991	49	2.2	49	82	0	122	33	30	11	25	1.91
56586449--56586575	63	2.0	63	86	3	175	32	7	31	29	1.84
56587633--56587726	11	8.9	11	73	23	78	43	1	0	55	1.06
56587644--56587671	13	2.2	13	100	0	56	35	0	0	64	0.94
56587644--56587720	40	1.9	39	87	10	111	40	0	0	59	0.97
56587624--56587725	51	2.0	50	90	1	159	41	0	0	57	1.05
56587666--56587700	17	2.1	17	88	0	52	37	0	0	62	0.95
56587684--56587733	13	4.3	13	76	23	58	46	0	0	54	1.00
56587656--56587725	9	8.1	9	70	20	51	42	0	0	57	0.99
56587682--56587733	22	2.3	23	93	3	88	48	0	0	51	1.00
56591161--56591239	22	3.7	20	79	17	79	60	3	0	35	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56591344--56591380	15	2.5	15	91	8	58	78	5	0	16	0.93
56592001--56592089	43	2.0	44	91	2	144	50	3	10	35	1.53
56592953--56593003	22	2.3	22	96	0	93	23	9	33	33	1.88
56593617--56593672	26	2.2	26	90	3	87	39	19	21	19	1.93
56594360--56594384	2	12.5	2	100	0	50	52	0	0	48	1.00
56597473--56597524	25	2.1	25	96	0	95	46	1	34	17	1.59
56598240--56598270	15	2.0	16	93	6	55	32	9	19	38	1.84
56599724--56599783	30	2.0	31	83	9	79	35	5	8	51	1.54
56614649--56614862	107	2.0	106	89	2	331	33	19	17	29	1.95
56616229--56616268	3	13.3	3	94	0	71	35	0	0	65	0.93
56616336--56616415	39	2.0	40	85	9	110	17	8	1	72	1.16
56617076--56617365	109	2.7	108	90	3	442	31	17	17	34	1.93
56618317--56618382	26	2.5	27	80	2	80	51	4	6	37	1.47
56618745--56618912	30	5.7	29	82	3	165	31	21	4	42	1.74
56618744--56618881	59	2.3	59	86	4	181	32	21	3	42	1.70
56619239--56619285	22	2.1	22	88	4	67	82	0	14	2	0.75
56619236--56619275	6	6.3	6	86	11	53	80	0	20	0	0.72
56619236--56619276	13	3.2	13	92	0	64	80	0	19	0	0.71
56619509--56619560	7	7.4	7	78	8	61	82	0	17	0	0.66
56619503--56619559	12	4.8	12	79	12	73	82	0	17	0	0.67
56619503--56619561	13	4.5	13	75	10	57	81	0	18	0	0.69
56619503--56619560	25	2.5	22	84	15	66	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56620962--56620997	18	1.9	19	88	5	56	52	8	8	30	1.61
56621995--56622049	22	2.5	21	91	2	74	10	18	36	34	1.86
56622007--56622049	22	2.0	22	100	0	86	11	23	37	27	1.89
56622119--56622159	17	2.3	18	87	8	57	58	4	4	31	1.40
56622319--56622387	18	3.9	18	73	7	70	28	13	11	46	1.78
56623484--56623522	12	3.0	13	88	11	62	61	2	0	35	1.10
56623484--56623522	14	2.7	14	92	4	60	61	2	0	35	1.10
56623689--56623725	18	2.1	18	90	10	58	62	5	0	32	1.18
56625969--56626021	16	3.4	15	75	17	54	33	0	0	66	0.92
56627418--56627473	3	18.0	3	76	10	51	30	0	3	66	1.09
56632519--56632563	15	2.9	15	86	6	54	75	0	24	0	0.80
56632517--56632590	6	13.8	5	78	16	53	74	0	24	1	0.90
56632700--56632782	44	1.9	43	85	2	112	27	13	30	28	1.94
56633906--56634130	98	2.3	99	88	1	317	32	22	19	24	1.97
56634103--56635185	50	22.7	49	73	11	890	31	20	20	26	1.98
56634105--56634856	95	7.9	95	89	0	1108	31	20	20	27	1.98
56634112--56635417	190	6.9	190	82	7	1353	31	21	21	26	1.98
56634781--56635839	95	11.2	95	84	4	1145	31	21	20	25	1.98
56635167--56635221	18	3.1	18	100	0	110	38	21	23	16	1.93
56635072--56635310	131	1.8	131	92	0	406	31	20	23	24	1.98
56635203--56635839	50	13.4	50	75	10	577	31	21	20	25	1.98
56634258--56635654	240	5.9	233	79	9	1263	31	21	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56635821--56635857	18	2.1	18	100	0	74	37	21	24	16	1.93
56635839--56636003	45	3.6	45	78	8	195	29	21	23	25	1.99
56635726--56635946	113	2.0	113	92	1	372	31	21	21	25	1.98
56635839--56636023	95	1.9	95	92	0	307	28	22	22	26	1.99
56635631--56636022	208	1.9	208	91	1	651	30	21	21	26	1.98
56634547--56636037	654	2.3	643	89	3	2051	31	21	21	25	1.98
56637481--56637548	3	22.0	3	78	14	68	30	1	2	64	1.17
56637467--56637566	9	11.4	8	70	20	51	29	3	4	64	1.27
56637484--56637566	18	4.6	18	78	13	82	28	2	3	65	1.22
56649132--56649184	16	3.4	15	75	17	54	33	1	0	64	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207