genome.fa.s19.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  164  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50523310--50523396	27	3.2	27	82	4	113	36	19	24	19	1.95
50523353--50523654	27	11.2	27	80	3	268	35	19	21	24	1.96
50523692--50523773	24	3.5	23	78	5	83	20	6	24	48	1.72
50523918--50524138	32	6.9	32	77	6	196	19	22	21	36	1.95
50523915--50524152	96	2.5	95	77	8	241	20	21	20	37	1.95
50524144--50524208	22	3.0	22	72	4	69	23	18	13	44	1.85
50525432--50525556	34	3.7	34	83	1	144	24	13	27	35	1.93
50527412--50527528	23	5.1	23	72	10	87	38	24	19	17	1.93
50527428--50527537	46	2.4	46	84	3	141	37	25	18	19	1.94
50534970--50535098	40	3.2	40	83	2	152	40	30	16	13	1.86
50539554--50539599	4	11.0	4	90	9	74	0	28	0	71	0.86
50539629--50539697	22	3.0	22	84	16	79	28	7	0	63	1.21
50539648--50539693	14	3.4	14	76	8	51	32	4	0	63	1.14
50558626--50558665	19	2.2	18	86	4	53	42	0	7	50	1.30
50569739--50569924	34	5.4	34	87	2	219	33	33	12	19	1.90
50569743--50569924	70	2.6	68	85	3	229	33	33	13	19	1.91
50573439--50573483	20	2.1	22	84	12	58	13	11	8	66	1.44
50574665--50574906	35	7.1	35	82	7	291	19	21	17	42	1.90
50574665--50574906	67	3.6	68	84	7	294	19	21	17	42	1.90
50574665--50574906	102	2.4	102	91	1	387	19	21	17	42	1.90
50580536--50580564	12	2.5	12	94	5	51	37	0	20	41	1.53
50587787--50587905	44	2.7	43	75	13	125	31	28	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50595092--50595198	44	2.4	43	76	13	110	29	27	19	23	1.98
50607838--50607912	18	4.3	18	74	12	59	64	4	1	30	1.20
50609482--50609862	173	2.2	172	80	8	393	27	23	20	28	1.99
50609776--50610302	132	4.0	132	87	3	816	24	24	21	30	1.99
50609782--50610258	257	1.9	257	93	0	819	24	24	20	30	1.99
50614755--50614827	36	2.0	36	100	0	146	15	30	13	41	1.85
50618395--50618440	24	1.9	24	86	0	65	10	26	17	45	1.81
50624696--50624746	10	5.2	10	77	11	52	74	1	0	23	0.92
50624696--50624756	30	2.0	29	84	12	79	72	1	0	26	0.94
50630915--50630948	6	5.7	6	85	0	50	32	0	20	47	1.51
50635959--50636031	38	1.9	38	94	0	128	41	16	12	30	1.85
50637063--50637142	34	2.4	34	95	0	142	43	32	11	12	1.78
50637773--50637802	16	1.9	16	93	6	53	50	20	0	30	1.49
50655241--50655301	22	2.7	22	87	2	77	49	1	1	47	1.21
50655277--50655316	16	2.5	16	91	0	62	47	2	7	42	1.45
50655327--50655492	59	2.8	59	95	0	296	39	4	10	45	1.59
50657584--50657698	9	12.4	9	71	14	83	64	0	2	32	1.13
50657594--50657654	26	2.2	28	83	13	74	63	0	1	34	1.04
50657795--50657877	19	4.4	19	73	11	73	27	6	1	65	1.24
50657805--50657879	9	8.2	9	71	11	55	30	5	0	64	1.16
50657826--50657892	18	3.8	17	79	11	55	25	2	1	70	1.10
50657972--50658164	89	2.2	89	83	5	243	35	9	17	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50657974--50658192	89	2.5	87	80	9	228	34	9	16	39	1.81
50659573--50659605	16	2.1	16	94	0	57	39	6	33	21	1.78
50659780--50659847	16	4.2	16	74	20	54	54	1	0	44	1.09
50659800--50659847	18	2.8	18	74	22	50	56	0	0	43	0.99
50659789--50659830	15	2.9	15	82	10	52	52	0	0	47	1.00
50659918--50659954	16	2.2	17	86	13	51	54	0	2	43	1.14
50659783--50659959	59	3.0	58	70	17	164	51	3	1	42	1.30
50659937--50660104	47	3.7	46	70	18	143	47	4	2	45	1.37
50659894--50660178	91	3.0	93	85	6	328	48	3	2	45	1.35
50659996--50660056	28	2.2	28	85	5	81	50	3	0	45	1.17
50659971--50660178	91	2.3	91	93	0	344	46	4	3	46	1.39
50659996--50660138	44	3.2	43	68	16	119	48	3	2	46	1.31
50660021--50660159	47	3.0	47	68	17	137	49	4	2	43	1.34
50663219--50663254	15	2.4	15	100	0	72	44	11	8	36	1.70
50663465--50663502	6	6.3	6	100	0	76	50	0	0	50	1.00
50663945--50663969	13	1.9	13	100	0	50	20	16	8	56	1.65
50664455--50664523	29	2.4	29	90	4	113	40	21	7	30	1.80
50665613--50665641	15	1.9	15	100	0	58	62	24	6	6	1.45
50669962--50670002	21	2.0	21	90	0	64	24	2	24	48	1.63
50671582--50671627	23	2.0	23	84	12	60	19	0	8	71	1.11
50686415--50686439	3	8.3	3	100	0	50	68	0	32	0	0.90
50688284--50688322	20	2.1	17	86	13	51	69	2	15	12	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50704234--50704274	13	3.2	13	75	25	50	0	31	21	46	1.52
50704432--50704456	12	2.1	12	100	0	50	24	16	8	52	1.70
50707720--50707958	72	3.3	72	88	1	356	24	7	13	54	1.64
50713982--50714028	22	2.1	23	88	4	69	17	4	31	46	1.67
50714086--50714186	28	3.4	28	78	15	96	44	0	11	43	1.41
50714300--50714569	125	2.2	127	84	5	354	40	13	17	29	1.87
50715499--50715612	59	1.9	58	86	10	160	52	1	6	39	1.37
50719921--50719967	16	2.9	16	96	0	85	51	6	0	42	1.27
50730218--50730271	25	2.2	25	82	0	63	72	1	7	18	1.17
50730565--50730677	19	5.8	19	88	4	172	37	14	10	38	1.80
50730565--50730677	40	2.9	39	93	5	194	37	14	10	38	1.80
50730558--50730677	59	2.1	57	86	6	172	38	13	10	38	1.78
50730756--50730843	44	2.0	44	84	0	113	38	30	15	14	1.88
50731986--50732027	22	1.9	22	85	9	59	30	2	0	66	1.04
50744177--50744274	44	2.2	45	87	5	137	30	13	27	28	1.94
50744284--50744440	44	3.6	44	68	10	140	29	22	24	24	1.99
50744285--50744487	88	2.3	88	94	0	361	30	22	23	23	1.99
50744339--50744477	44	3.2	44	67	11	131	30	23	22	23	1.99
50746062--50746103	22	1.9	22	85	9	59	30	2	0	66	1.04
50748774--50748970	98	2.0	98	95	0	358	37	25	10	27	1.88
50749637--50749685	24	2.0	26	88	8	75	57	4	8	30	1.47
50750256--50750370	61	1.9	61	92	0	194	23	23	2	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50750502--50750636	19	7.0	19	88	3	207	38	14	9	37	1.78
50750502--50750635	59	2.3	59	90	2	209	38	13	9	38	1.78
50752129--50752161	12	2.6	13	85	9	50	81	0	18	0	0.68
50753943--50754023	21	3.8	21	81	4	92	37	24	22	16	1.93
50755216--50755245	16	1.9	16	93	6	53	43	0	3	53	1.17
50755840--50755881	18	2.4	19	84	11	54	35	0	14	50	1.43
50762687--50762807	54	2.2	54	82	2	136	21	26	23	28	1.99
50769711--50769995	27	10.6	27	81	0	201	33	16	20	29	1.94
50769711--50769995	81	3.5	81	75	2	259	33	16	20	29	1.94
50772648--50772712	31	2.1	32	85	8	89	16	4	20	58	1.56
50773223--50773549	81	4.0	81	81	2	352	35	16	19	28	1.94
50773223--50773549	27	12.1	27	85	1	305	35	16	19	28	1.94
50775850--50776079	124	1.9	123	89	0	361	34	17	15	32	1.91
50777780--50777835	19	2.9	18	81	7	58	41	1	8	48	1.45
50779558--50779600	18	2.3	19	84	4	52	53	13	4	27	1.60
50783475--50783549	25	3.0	25	96	0	132	33	37	14	14	1.87
50787162--50787214	20	2.7	19	77	11	54	49	0	0	50	1.00
50787161--50787210	21	2.5	20	75	15	57	48	0	0	52	1.00
50787170--50787204	13	2.5	15	90	9	56	45	0	0	54	0.99
50791026--50791120	44	2.1	46	90	7	151	35	27	4	32	1.76
50791102--50791173	16	4.5	16	89	0	99	27	25	5	41	1.77
50806368--50806462	35	2.7	35	77	11	95	42	1	4	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50808268--50808308	22	1.9	21	90	5	64	70	0	26	2	0.99
50808434--50808475	5	8.4	5	79	10	50	38	0	19	42	1.51
50812683--50812765	43	1.9	43	90	0	130	22	14	22	39	1.91
50813651--50813687	9	4.1	9	89	0	56	45	10	10	32	1.74
50816161--50816243	24	3.6	23	77	7	80	37	12	13	37	1.82
50816906--50817092	35	5.4	35	74	6	114	22	21	17	37	1.94
50816916--50817047	70	1.9	70	82	0	165	24	22	18	34	1.97
50816906--50817092	70	2.7	70	74	3	155	22	21	17	37	1.94
50824362--50824416	17	3.3	15	82	14	56	54	3	3	38	1.36
50826709--50826768	24	2.6	23	83	2	75	26	11	18	43	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207