genome.fa.s19.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  204  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61471853--61471921	21	3.3	21	83	0	84	1	40	20	37	1.61
61477425--61477649	9	25.8	9	69	15	134	32	1	20	45	1.61
61477414--61477716	25	11.7	25	72	13	127	34	1	18	45	1.61
61477429--61477716	16	16.8	16	66	22	74	34	2	18	45	1.61
61477429--61477648	87	2.6	87	77	12	217	32	1	20	45	1.61
61477518--61477629	34	3.2	37	72	13	85	31	1	20	46	1.61
61477586--61477688	38	2.7	38	89	4	145	38	0	14	45	1.52
61477917--61478002	13	6.8	13	78	12	81	41	1	10	46	1.46
61478133--61478163	13	2.5	13	94	5	55	67	0	3	29	1.06
61478148--61478191	18	2.5	17	82	7	52	56	0	2	40	1.11
61478862--61478888	14	1.9	14	100	0	54	51	7	11	29	1.64
61479560--61479685	30	4.2	30	77	11	125	34	23	3	38	1.71
61480125--61480153	15	2.0	15	93	6	51	65	0	34	0	0.93
61480254--61480311	12	4.9	12	80	19	61	77	0	20	1	0.86
61480841--61480878	20	1.9	20	88	0	58	36	13	7	42	1.73
61481098--61481179	17	4.8	16	69	11	56	34	13	13	39	1.84
61481098--61481181	34	2.4	35	82	5	100	33	14	13	39	1.84
61481226--61481409	17	9.7	19	73	15	123	30	12	10	45	1.76
61481226--61481311	36	2.4	36	94	0	145	29	15	12	43	1.83
61482513--61482568	14	4.0	14	81	6	60	87	7	5	0	0.67
61483429--61484697	161	7.9	161	89	5	1783	24	15	20	38	1.92
61483429--61484697	80	15.8	80	88	6	1759	24	15	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61484906--61484999	30	3.2	29	72	13	84	36	21	4	38	1.73
61485554--61485595	12	3.6	12	81	12	52	80	0	16	2	0.81
61485549--61485586	18	2.1	18	90	9	60	78	0	21	0	0.74
61485543--61485597	23	2.4	23	85	11	69	74	0	23	1	0.91
61485558--61485595	18	2.1	18	90	0	58	81	0	15	2	0.80
61486122--61486159	20	1.9	20	88	0	58	36	13	7	42	1.73
61486282--61486327	17	2.6	17	83	12	58	30	15	8	45	1.76
61486306--61486359	28	1.9	28	88	0	81	46	11	7	35	1.67
61486514--61486691	17	9.8	19	70	15	119	34	12	11	41	1.78
61486544--61486689	35	4.1	34	75	12	107	36	10	10	42	1.74
61486514--61486677	36	4.6	36	77	12	142	34	12	10	42	1.78
61486552--61486692	19	7.8	19	66	20	79	37	10	10	41	1.75
61486659--61486708	20	2.6	19	87	9	66	36	8	12	44	1.71
61486670--61486758	38	2.4	37	83	5	117	29	8	12	49	1.71
61486697--61486749	19	2.8	18	75	16	54	26	7	13	52	1.66
61488951--61488984	17	2.1	17	88	5	52	47	8	5	38	1.59
61489174--61489228	14	3.9	14	76	4	56	45	38	0	16	1.47
61489174--61489238	22	3.0	21	88	2	85	46	38	0	15	1.46
61489580--61489872	115	2.6	115	78	4	306	28	20	19	31	1.97
61489673--61490075	198	2.0	201	83	5	514	27	20	19	33	1.96
61489580--61490184	313	1.9	313	81	3	716	27	20	19	32	1.97
61489875--61490528	114	5.8	114	81	4	653	25	22	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61491592--61492540	285	3.3	282	92	3	1519	31	11	6	50	1.64
61492911--61493020	43	2.6	42	79	12	100	0	33	0	66	0.92
61492977--61493050	4	19.0	4	77	18	59	0	29	0	70	0.88
61492940--61493042	44	2.4	44	84	10	142	0	30	0	69	0.88
61492914--61493046	38	3.5	37	72	17	112	0	33	0	66	0.92
61500403--61500620	51	4.3	51	88	0	303	35	15	21	27	1.93
61512869--61512911	22	2.0	22	85	0	59	53	2	6	37	1.41
61512816--61512935	62	1.9	62	81	13	147	51	3	9	35	1.50
61514350--61514402	21	2.3	24	84	12	76	33	0	3	62	1.13
61519350--61519383	14	2.5	14	95	4	61	14	0	35	50	1.44
61523103--61523147	23	1.9	24	95	4	83	48	0	0	51	1.00
61523138--61523179	16	2.6	16	92	0	66	47	2	7	42	1.43
61523182--61523301	59	2.1	59	90	1	197	41	5	9	44	1.58
61527358--61527396	21	1.9	20	89	5	60	56	5	5	33	1.43
61527850--61527886	9	4.1	9	92	0	65	45	13	10	29	1.77
61527922--61527964	21	2.0	21	82	8	52	20	37	0	41	1.53
61528099--61528158	30	2.0	31	86	3	86	20	36	0	43	1.52
61529984--61530066	22	3.9	22	66	30	63	38	3	10	46	1.56
61531470--61531498	8	3.6	8	100	0	58	24	13	27	34	1.93
61531585--61531637	23	2.3	23	86	0	88	20	18	26	33	1.96
61541439--61541614	94	1.9	93	86	10	252	26	12	18	42	1.86
61546100--61546234	67	2.0	67	100	0	270	20	16	22	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61546640--61546745	52	2.0	52	98	0	203	26	29	5	38	1.79
61548959--61549008	23	2.2	23	85	7	66	24	0	16	60	1.36
61562159--61562205	21	2.2	22	88	3	69	21	17	38	23	1.93
61564273--61564303	15	2.1	15	100	0	62	45	12	0	41	1.42
61572361--61572407	18	2.5	20	86	13	80	8	19	25	46	1.77
61574822--61574857	16	2.2	16	100	0	72	16	19	11	52	1.73
61578309--61578380	27	2.8	26	83	6	85	31	1	1	65	1.10
61578309--61578364	27	2.1	27	93	0	94	28	1	0	69	0.98
61578335--61578382	25	1.9	25	86	0	69	33	0	2	64	1.05
61578870--61578900	12	2.6	12	94	0	53	41	19	0	38	1.51
61581132--61581158	11	2.5	11	100	0	54	55	7	7	29	1.55
61581540--61581592	14	3.6	14	73	14	52	64	3	3	28	1.28
61581650--61581680	3	10.3	3	100	0	62	67	0	0	32	0.91
61581444--61581674	123	1.9	124	82	8	299	56	6	6	31	1.48
61582945--61582970	13	2.0	13	100	0	52	7	0	30	61	1.24
61584027--61584097	31	2.3	31	80	0	88	45	9	9	35	1.71
61585330--61585542	110	1.9	114	84	7	294	44	16	8	30	1.79
61586155--61586246	44	2.1	42	78	11	96	28	4	11	55	1.55
61587024--61587067	20	2.2	20	100	0	88	59	0	0	40	0.98
61592550--61592579	15	2.0	15	100	0	60	13	26	20	40	1.89
61593917--61593959	17	2.4	16	82	17	50	67	2	0	30	1.03
61593919--61593959	18	2.2	18	87	12	57	70	2	0	26	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61595495--61595573	40	2.0	40	87	0	113	20	29	29	21	1.98
61595712--61595765	22	2.5	22	85	11	76	22	27	1	48	1.61
61595727--61595826	51	2.0	51	88	4	148	26	24	2	48	1.62
61596962--61596987	7	3.7	7	100	0	52	26	0	15	57	1.38
61601032--61601071	21	1.9	21	85	10	55	55	2	2	40	1.27
61611524--61611566	21	2.1	20	82	4	50	41	9	6	41	1.64
61614921--61614966	22	2.1	22	84	4	58	47	6	13	32	1.68
61616080--61616154	30	2.5	30	82	10	82	46	6	1	45	1.37
61616142--61616179	18	2.1	18	85	9	51	55	10	2	31	1.48
61617232--61617700	156	3.0	156	95	0	848	31	17	22	28	1.96
61619960--61620069	54	2.0	54	82	0	130	25	18	18	38	1.93
61620013--61620481	156	3.0	156	95	0	848	29	22	17	31	1.96
61625216--61625271	26	2.2	25	81	12	62	37	17	12	32	1.88
61633060--61633107	19	2.6	19	83	3	62	60	0	2	37	1.09
61634295--61634347	26	2.0	26	96	0	97	41	9	7	41	1.66
61644414--61644467	26	2.1	26	100	0	108	25	16	7	50	1.71
61644560--61644622	31	2.1	30	87	3	90	26	7	7	57	1.55
61644483--61644785	149	2.0	150	82	4	371	33	11	10	44	1.75
61648649--61649080	149	2.9	146	84	3	519	48	19	7	24	1.74
61649869--61649908	21	1.9	21	84	0	53	37	7	27	27	1.84
61677012--61677374	181	2.0	181	100	0	726	37	9	15	36	1.81
61679324--61679775	232	2.0	224	81	8	518	44	12	11	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61683677--61683719	20	2.2	20	100	0	86	55	30	0	13	1.39
61684996--61685046	14	3.6	14	74	7	50	68	0	13	17	1.21
61685035--61685068	16	2.1	16	88	5	50	76	5	14	2	1.09
61685945--61686016	24	2.9	24	78	15	67	44	0	22	33	1.53
61686160--61686255	39	2.5	39	80	6	108	20	23	28	27	1.99
61687832--61687885	21	2.6	21	93	0	90	29	18	16	35	1.93
61694634--61694749	51	2.2	52	92	1	189	38	6	16	38	1.73
61701945--61702285	185	1.9	182	85	5	472	36	15	18	29	1.92
61708356--61708381	6	4.3	6	100	0	52	46	0	34	19	1.50
61715562--61715920	179	2.0	178	97	0	682	27	13	17	41	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207