genome.fa.s19.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  146  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44899212--44899271	22	2.8	22	89	2	86	18	36	36	8	1.81
44899802--44899847	22	2.1	21	88	4	65	32	4	6	56	1.45
44899852--44899910	30	2.0	30	86	6	84	28	3	3	64	1.26
44900233--44900285	27	2.0	27	81	7	63	24	5	3	66	1.31
44900299--44900323	12	2.1	12	100	0	50	24	0	8	68	1.16
44901828--44901938	58	2.0	54	82	7	132	52	3	13	30	1.58
44903339--44903946	40	14.6	40	76	11	383	24	19	23	32	1.98
44903339--44903955	82	7.4	82	72	13	410	23	19	23	33	1.97
44903374--44903974	127	4.8	127	86	2	820	23	19	22	33	1.97
44904028--44904510	50	9.7	50	68	5	206	25	20	22	31	1.98
44903970--44904525	100	5.6	100	85	1	704	25	21	22	31	1.98
44903970--44904525	199	2.8	199	88	0	806	25	21	22	31	1.98
44904579--44904839	44	5.9	44	78	3	267	29	26	16	27	1.97
44904568--44904841	132	2.1	132	95	0	494	28	25	16	29	1.97
44905167--44905220	24	2.2	25	81	15	69	27	20	14	37	1.92
44906544--44906590	17	2.8	16	81	15	58	0	6	10	82	0.82
44910266--44910332	31	2.2	29	78	5	71	53	0	10	35	1.35
44914784--44914839	25	2.2	25	90	0	85	62	3	0	33	1.12
44914799--44914840	12	3.4	12	75	18	50	59	2	0	38	1.10
44918554--44918668	57	2.0	57	98	0	221	33	20	19	26	1.96
44922266--44922352	21	4.1	21	79	7	104	36	22	21	18	1.95
44922266--44922351	23	4.0	23	77	11	101	37	23	22	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44922266--44922352	44	2.0	41	84	6	111	36	22	21	18	1.95
44924526--44924577	17	3.2	15	76	15	50	1	30	0	67	1.02
44925506--44925589	34	2.4	34	80	2	96	28	15	14	41	1.86
44925634--44925807	45	3.9	45	81	6	199	28	20	13	37	1.91
44926362--44926407	24	1.9	24	90	0	74	54	13	2	30	1.50
44928325--44928370	24	1.9	24	90	0	74	54	13	2	30	1.50
44929622--44929672	15	3.1	15	77	20	57	35	0	1	62	1.06
44929632--44929674	19	2.3	18	88	11	61	32	0	2	65	1.06
44929640--44929691	25	2.1	25	88	0	77	36	0	1	61	1.07
44931280--44931322	21	2.0	21	90	4	68	32	0	23	44	1.54
44932672--44933130	114	4.0	114	82	3	521	24	21	26	27	2.00
44933846--44933889	14	3.1	14	87	9	54	15	2	47	34	1.58
44933759--44933980	103	2.2	102	84	9	283	25	0	31	42	1.61
44933863--44934124	90	2.9	86	83	7	319	28	1	26	43	1.64
44933894--44934124	90	2.6	88	88	3	336	29	1	24	44	1.64
44934319--44934482	84	2.0	84	82	2	204	30	17	20	32	1.95
44934760--44935015	84	3.0	84	80	4	252	31	14	20	33	1.93
44934795--44935016	84	2.6	83	82	4	259	31	14	21	32	1.93
44934256--44935771	545	2.8	544	91	0	2354	29	15	19	34	1.93
44935370--44935576	84	2.5	84	86	4	285	29	17	22	30	1.96
44935311--44935584	84	3.3	83	80	3	280	28	16	21	32	1.96
44936661--44936685	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44937273--44937342	18	3.7	18	78	17	88	44	11	0	44	1.40
44937273--44937349	39	1.9	41	94	5	140	44	10	0	45	1.38
44937338--44937371	17	2.0	17	94	0	59	44	0	0	55	0.99
44937567--44937624	30	1.9	30	82	6	73	46	13	5	34	1.66
44937585--44937968	9	44.3	9	68	17	142	48	18	1	31	1.59
44937730--44937843	7	14.9	7	71	23	63	53	17	0	28	1.50
44937698--44937822	51	2.4	51	82	12	148	52	19	0	28	1.46
44937611--44937924	16	18.9	16	69	20	150	49	18	1	29	1.59
44937585--44937968	25	15.5	25	70	17	150	48	18	1	31	1.59
44937882--44937968	34	2.5	35	73	14	92	47	17	0	35	1.48
44939750--44939796	21	2.2	21	96	0	85	34	19	46	0	1.50
44940166--44940375	43	4.9	43	89	0	294	29	21	25	24	1.99
44940749--44940802	10	5.6	10	75	14	51	62	1	3	31	1.23
44941024--44941066	18	2.3	19	88	4	61	25	4	0	69	1.07
44941061--44941107	19	2.5	20	82	10	62	34	2	2	61	1.20
44941223--44941434	92	2.3	91	82	4	248	33	10	18	36	1.85
44943602--44943654	27	2.0	27	96	0	97	43	1	24	30	1.65
44946968--44946999	14	2.1	16	88	11	50	21	9	6	62	1.47
44947488--44947538	27	2.0	27	92	7	88	50	0	5	43	1.26
44948403--44948529	43	3.0	43	87	2	175	18	18	29	33	1.95
44949488--44949546	30	2.0	30	89	0	91	28	18	1	50	1.56
44949762--44949806	23	1.9	24	90	4	74	64	2	17	15	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44950180--44950239	31	2.0	30	83	9	77	66	0	33	0	0.92
44951054--44951099	17	2.6	18	77	16	51	32	13	8	45	1.73
44951053--44951099	16	2.6	19	74	16	55	31	12	10	44	1.77
44951154--44951570	17	23.8	17	66	17	117	31	12	11	45	1.77
44951154--44951204	20	2.7	19	82	11	70	35	13	11	39	1.82
44951152--44951584	18	24.5	18	69	17	207	30	12	11	45	1.77
44951286--44951590	17	17.4	17	70	12	122	33	12	10	43	1.77
44962629--44962671	13	3.2	13	80	3	50	83	4	9	2	0.87
44962617--44962677	26	2.3	27	85	2	79	85	4	6	3	0.83
44962620--44962677	21	2.7	19	80	20	53	84	5	6	3	0.86
44962616--44962677	28	2.2	28	83	13	83	83	4	6	4	0.89
44963529--44963870	77	4.4	79	85	5	407	30	14	17	37	1.91
44963784--44963962	96	1.9	94	83	4	234	35	13	18	31	1.90
44963705--44964037	173	1.9	170	88	4	499	32	15	20	32	1.93
44963881--44964068	75	2.5	75	93	3	317	30	15	22	31	1.95
44963883--44964123	75	3.2	74	87	5	315	28	17	20	34	1.95
44964456--44964631	30	5.9	29	72	15	130	30	22	6	40	1.80
44964763--44964807	23	1.9	24	90	4	74	64	2	17	15	1.39
44965333--44965387	26	2.1	27	82	3	67	74	5	18	1	1.10
44966057--44966102	17	2.6	18	80	16	60	32	15	8	43	1.77
44966150--44966283	37	3.7	36	72	13	114	30	12	11	45	1.77
44966150--44966458	18	17.0	19	71	18	164	32	12	11	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44966144--44966207	20	3.3	20	76	14	71	42	12	10	34	1.78
44966291--44966458	37	4.6	36	73	9	142	34	12	11	41	1.79
44966157--44966598	17	24.8	18	71	14	222	30	12	11	45	1.78
44966504--44966620	17	6.6	19	79	10	81	36	10	10	42	1.73
44971843--44971874	15	2.1	16	94	5	57	15	0	0	84	0.63
44971833--44971875	21	2.0	22	86	4	61	18	2	0	79	0.85
44973501--44973603	40	2.6	39	75	7	102	40	22	17	19	1.91
44973590--44973936	113	3.1	113	91	0	550	27	24	21	26	1.99
44974046--44974138	41	2.3	41	81	7	100	18	23	32	25	1.97
44976629--44976659	16	1.9	16	93	0	53	35	25	6	32	1.82
44977800--44977855	27	2.1	27	93	0	94	42	3	1	51	1.29
44977811--44977870	27	2.2	27	88	5	86	45	5	0	50	1.23
44978243--44978282	14	2.9	14	88	0	53	52	5	2	40	1.37
44984227--44984385	87	1.8	87	84	8	216	41	16	28	12	1.85
44984722--44985190	173	2.7	171	91	0	767	23	21	25	29	1.99
44984722--44985190	43	10.9	43	90	0	733	23	21	25	29	1.99
44985305--44985348	21	2.1	21	87	8	63	43	29	13	13	1.83
44985499--44985531	16	2.0	17	94	5	59	42	6	0	51	1.26
44987124--44987176	28	2.0	27	85	14	74	41	16	0	41	1.49
44987414--44987494	41	1.9	43	87	5	121	33	22	6	38	1.79
45005009--45005037	9	3.2	9	100	0	58	58	10	0	31	1.31
45005009--45005045	18	2.1	18	89	0	56	59	13	0	27	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45006146--45006177	3	10.7	3	100	0	64	34	0	0	65	0.93
45006995--45007032	20	1.9	20	88	0	58	60	0	2	36	1.11
45009192--45009243	17	3.2	16	75	10	52	71	1	3	23	1.13
45011183--45011310	65	1.9	67	92	6	217	43	4	3	47	1.42
45011561--45011621	20	3.3	20	69	21	60	8	29	0	62	1.24
45012769--45012800	15	2.1	15	100	0	64	37	12	6	43	1.68
45018577--45018702	63	2.0	63	96	0	234	23	24	23	29	1.99
45019486--45019525	16	2.5	16	95	0	71	27	27	7	37	1.84
45020817--45020896	23	3.5	22	69	17	65	35	8	16	40	1.79
45020866--45020926	32	1.9	32	83	6	79	27	11	18	42	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207