genome.fa.s19.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  53  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15542125--15542181	25	2.4	22	80	13	60	19	42	1	36	1.62
15542157--15542195	16	2.6	15	84	11	53	23	35	5	35	1.77
15542416--15542483	33	2.1	33	94	0	118	32	2	29	35	1.73
15542724--15542761	17	2.2	17	95	0	67	10	36	13	39	1.79
15544232--15544284	24	2.2	24	96	0	97	43	3	3	49	1.38
15544391--15544436	22	2.1	22	88	8	67	45	10	4	39	1.59
15544376--15544526	56	2.7	56	98	0	293	47	11	2	39	1.54
15544447--15544492	22	2.1	22	91	0	74	47	10	2	39	1.51
15544469--15544615	34	4.5	34	78	10	180	48	9	3	38	1.52
15544513--15544741	9	26.7	9	65	18	60	44	13	3	38	1.60
15544376--15544550	56	3.1	54	91	6	230	48	10	2	38	1.52
15544413--15544621	96	2.3	90	89	6	303	47	10	3	38	1.55
15544621--15544699	34	2.3	34	80	0	86	43	13	1	41	1.53
15544743--15544798	25	2.2	25	83	0	67	44	14	5	35	1.68
15550143--15550313	66	2.6	65	83	4	191	40	18	26	14	1.88
15550285--15550396	21	5.3	21	82	0	107	36	16	41	4	1.69
15550701--15550899	43	4.5	42	77	13	179	22	16	31	30	1.96
15550700--15550823	46	2.8	44	77	9	117	22	17	29	30	1.97
15550700--15550866	90	1.9	89	81	6	203	22	17	29	29	1.97
15550818--15550928	43	2.6	43	86	0	114	23	17	31	27	1.97
15550915--15551039	43	2.9	44	82	11	159	35	25	18	20	1.95
15551104--15551146	22	2.0	22	90	0	68	44	27	18	9	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15552708--15552756	22	2.3	21	80	13	55	12	8	2	77	1.07
15552760--15552806	18	2.8	16	84	12	58	14	4	2	78	0.99
15552941--15553016	14	5.6	14	72	16	52	44	0	1	53	1.08
15552863--15553141	36	8.0	34	73	16	180	43	1	1	54	1.18
15552983--15553016	12	2.7	13	86	9	52	50	0	0	50	1.00
15553028--15553074	21	2.2	22	88	3	69	46	0	2	51	1.13
15553108--15553158	20	2.5	20	87	6	68	39	0	0	60	0.97
15553121--15553145	13	1.9	13	100	0	50	40	0	0	60	0.97
15553106--15553165	21	3.0	20	81	13	70	41	0	0	58	0.98
15553221--15553250	11	2.6	11	94	5	51	63	0	0	36	0.95
15553234--15553260	14	1.9	14	100	0	54	66	0	0	33	0.92
15553505--15553575	20	3.8	20	69	27	66	40	1	0	57	1.07
15553496--15553542	22	2.1	23	96	4	87	42	0	0	57	0.98
15553512--15553608	33	2.8	33	86	9	124	40	1	2	56	1.18
15553573--15553639	22	3.1	21	82	8	73	46	0	2	50	1.16
15553569--15553640	19	3.6	19	77	17	67	45	0	2	51	1.15
15553601--15553645	18	2.5	19	79	13	51	51	0	0	48	1.00
15553679--15553755	33	2.3	33	82	8	86	33	0	3	62	1.14
15553715--15553771	14	4.3	14	78	19	59	36	0	1	61	1.07
15553713--15553792	24	3.3	24	87	5	99	38	0	1	60	1.05
15553822--15553881	30	2.0	31	84	12	81	45	0	0	55	0.99
15553594--15553887	139	2.1	135	78	14	314	39	1	3	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15553997--15554026	7	4.1	7	95	4	51	43	0	0	56	0.99
15557274--15557346	30	2.4	30	88	0	101	27	13	26	32	1.94
15559575--15559725	71	2.1	72	91	2	241	41	3	3	51	1.37
15559634--15559674	20	2.0	20	85	0	55	53	0	0	46	1.00
15559788--15559872	40	2.1	41	88	2	127	54	2	5	37	1.38
15559817--15559872	22	2.9	18	69	25	51	60	0	1	37	1.07
15560342--15560384	16	2.5	17	81	7	52	34	2	0	62	1.08
15560369--15560412	19	2.2	20	92	4	72	47	6	0	45	1.29
15560945--15560974	15	1.9	16	93	6	53	30	0	0	70	0.88
15562634--15562673	18	2.2	18	86	0	53	42	2	35	20	1.65
15571258--15571294	16	2.3	16	86	13	58	40	0	0	59	0.97
15571280--15571315	18	1.9	18	88	5	54	58	0	0	41	0.98
15574936--15575025	41	2.3	39	84	3	108	36	6	3	53	1.44
15574978--15575052	12	6.3	12	72	15	50	40	8	2	49	1.46
15603868--15603900	17	1.9	17	88	11	50	45	0	9	45	1.35
15614755--15614789	18	1.9	18	94	0	61	42	2	2	51	1.31
15617903--15617936	13	2.6	13	90	9	52	26	17	2	52	1.58
15617964--15617995	13	2.5	13	89	0	55	46	12	3	37	1.57
15618017--15618070	27	2.0	27	82	13	67	37	11	1	50	1.49
15617952--15618061	40	2.8	40	70	13	100	38	13	3	44	1.62
15618113--15618174	25	2.5	25	84	2	72	32	24	14	29	1.94
15624244--15624365	50	2.4	50	77	5	138	27	17	21	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15625725--15625793	13	5.0	13	73	16	59	11	17	0	71	1.15
15625743--15625777	13	2.6	13	95	4	61	14	14	0	71	1.15
15625725--15625777	7	7.4	7	82	16	65	15	15	0	69	1.19
15625743--15625793	20	2.6	20	84	3	68	9	17	0	72	1.11
15627289--15627373	35	2.4	35	98	0	161	42	4	14	38	1.66
15631850--15631896	3	15.7	3	95	0	76	61	0	4	34	1.15
15637481--15637531	22	2.5	20	82	17	68	21	0	0	78	0.75
15639875--15639921	11	4.3	11	78	10	60	57	0	2	40	1.11
15639847--15639934	33	2.7	32	86	10	117	68	0	3	28	1.06
15639881--15639927	22	2.1	22	96	0	85	68	0	2	29	1.02
15642822--15642892	26	2.7	26	77	4	79	49	1	2	46	1.25
15648658--15648696	10	4.2	9	87	12	53	0	12	0	87	0.55
15648661--15648693	16	2.2	16	89	10	52	0	12	0	87	0.53
15649695--15649753	24	2.4	25	91	2	93	44	10	0	45	1.37
15649893--15649962	19	3.7	19	82	3	97	37	10	0	52	1.35
15649898--15649968	37	1.9	37	100	0	142	39	11	0	49	1.39
15650177--15650238	33	2.0	31	90	9	99	24	22	3	50	1.64
15650294--15650354	32	2.0	31	93	6	106	49	3	22	24	1.65
15650559--15650615	18	3.1	18	89	2	78	52	0	8	38	1.33
15652326--15652370	16	2.8	17	76	13	58	40	11	13	35	1.80
15653203--15653235	15	2.2	15	100	0	66	48	6	0	45	1.27
15656198--15656387	40	4.8	40	78	10	169	25	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15656251--15656387	39	3.5	38	81	10	143	25	20	26	27	1.99
15664168--15664352	40	4.7	40	82	7	209	23	22	27	26	2.00
15664221--15664385	79	2.1	79	83	6	201	25	20	27	27	1.99
15666928--15666961	16	2.2	15	94	5	59	44	0	5	50	1.26
15672738--15672867	40	3.3	40	90	5	196	26	27	22	23	2.00
15675729--15675782	22	2.4	22	93	3	90	29	5	0	64	1.16
15676422--15676463	15	2.8	15	82	10	50	40	0	11	47	1.40
15695162--15695193	16	2.0	16	100	0	64	12	12	37	37	1.81
15700696--15700789	43	2.2	43	90	3	145	35	9	11	43	1.74
15701200--15701564	181	2.0	181	95	0	649	30	21	15	32	1.94
15703399--15703455	18	3.2	18	69	16	55	57	0	0	42	0.98
15705325--15705377	18	3.0	18	73	13	56	24	7	3	64	1.37
15705408--15705443	5	7.0	5	87	6	54	61	2	0	36	1.11
15706041--15706100	30	1.9	33	83	10	81	40	3	0	56	1.16
15716470--15716522	21	2.6	21	84	3	72	24	18	26	30	1.98
15717872--15717904	16	2.0	17	88	5	50	39	3	0	57	1.14
15727380--15727520	20	6.9	20	75	4	104	43	19	26	9	1.83
15735112--15735263	29	5.2	29	83	0	142	37	10	25	26	1.88
15756738--15756767	12	2.5	12	88	0	51	56	0	43	0	0.99
15777152--15777207	25	2.2	25	87	0	76	33	14	16	35	1.88
15777963--15778129	86	2.0	85	91	1	271	38	25	6	29	1.81
15792979--15793004	10	2.6	10	100	0	52	0	7	0	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15797844--15797877	18	1.9	17	88	5	50	41	0	38	20	1.53
15797995--15798057	24	2.6	24	82	0	81	15	38	1	44	1.57
15798157--15798187	16	1.9	16	93	0	53	9	9	6	74	1.23
15799759--15799827	37	1.9	35	82	11	86	39	2	2	55	1.30
15800671--15800815	71	2.0	71	91	0	236	32	11	13	42	1.81
15801694--15801739	7	6.1	7	80	14	56	17	41	0	41	1.49
15801677--15801732	24	2.3	24	93	6	96	17	41	0	41	1.50
15801699--15801746	14	3.1	16	77	17	64	14	41	0	43	1.45
15801694--15801763	31	2.3	31	92	5	115	17	40	0	42	1.49
15802945--15802990	6	7.7	6	100	0	92	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207