genome.fa.s19.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  118  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35554775--35554843	27	2.6	27	78	0	66	28	14	26	30	1.95
35556215--35556245	8	3.9	8	100	0	62	64	0	22	12	1.27
35569670--35569843	27	6.4	27	83	4	197	27	14	27	29	1.96
35569671--35569826	82	1.9	81	88	3	233	26	15	28	29	1.96
35577709--35577886	27	6.6	27	83	3	205	26	15	28	29	1.96
35577710--35577865	82	1.9	81	88	3	233	26	15	28	29	1.96
35577706--35577886	82	2.2	81	83	2	229	27	15	27	29	1.96
35578640--35578678	18	2.2	18	100	0	78	41	0	30	28	1.57
35585994--35586184	95	2.0	95	90	3	269	45	12	10	32	1.75
35586414--35586448	16	2.1	17	89	5	54	37	0	51	11	1.38
35588107--35588161	28	2.0	28	85	0	74	32	20	32	14	1.92
35598077--35598121	23	2.0	23	100	0	90	33	8	17	40	1.81
35606372--35606401	16	1.9	16	93	6	53	30	0	20	50	1.49
35613908--35613944	18	2.1	18	89	0	56	86	8	5	0	0.70
35613910--35613948	12	3.2	12	85	3	51	87	5	7	0	0.68
35615288--35615328	15	2.6	16	75	17	50	53	7	4	34	1.50
35616832--35617074	100	2.4	100	92	0	387	23	18	25	33	1.97
35616829--35617074	50	4.9	49	71	4	168	23	18	25	33	1.97
35617137--35617378	44	5.6	44	70	13	153	29	21	18	30	1.97
35617102--35617376	129	2.1	129	90	1	426	30	20	18	30	1.97
35617492--35617817	87	3.8	87	87	0	465	26	22	22	28	1.99
35617471--35617817	173	2.0	174	87	0	507	26	23	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35619920--35619964	20	2.2	20	84	11	56	6	22	4	66	1.33
35619926--35619964	20	2.0	20	90	10	62	5	23	2	69	1.21
35624492--35624532	15	2.6	16	75	17	50	53	7	4	34	1.50
35628390--35629305	468	2.0	469	86	1	1309	35	13	16	34	1.89
35629758--35629783	10	2.6	10	100	0	52	61	7	11	19	1.53
35634082--35634170	28	3.2	28	88	6	128	22	25	24	26	2.00
35635591--35635630	18	2.2	18	86	0	53	25	12	0	62	1.30
35636342--35636463	48	2.6	47	81	10	140	20	18	22	38	1.93
35640111--35640144	14	2.3	15	90	5	52	70	0	17	11	1.16
35640477--35640649	50	3.5	48	79	8	161	20	27	22	29	1.99
35647165--35647241	14	5.0	15	71	20	52	42	14	9	33	1.77
35647181--35647220	20	2.0	20	90	0	62	50	12	10	27	1.72
35647169--35647235	34	1.9	35	90	3	109	46	13	8	31	1.74
35648669--35648861	50	3.7	50	83	4	197	22	27	22	26	1.99
35653651--35654801	567	2.0	572	86	3	1589	35	24	14	25	1.94
35684982--35685132	51	3.0	51	85	2	189	27	12	24	35	1.92
35694407--35694722	29	10.8	29	77	6	235	22	27	13	36	1.92
35694407--35694635	59	3.9	58	81	4	244	21	28	14	34	1.93
35694406--35694722	88	3.6	88	88	4	419	22	27	13	36	1.92
35703683--35703749	33	2.0	33	100	0	134	34	14	11	38	1.84
35708787--35708872	45	1.9	45	92	0	145	34	24	15	25	1.94
35708883--35709069	51	3.7	50	74	7	180	32	29	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35710584--35710653	35	2.0	35	100	0	140	51	25	2	20	1.61
35711874--35711955	42	2.0	42	85	4	112	30	24	14	30	1.95
35717011--35717043	16	2.1	16	94	0	57	33	9	18	39	1.82
35721229--35721259	5	6.2	5	100	0	62	61	0	0	38	0.96
35724608--35724698	31	3.1	31	70	22	86	37	13	24	25	1.91
35736077--35736170	42	2.2	42	82	0	107	23	24	22	29	1.99
35741450--35741491	22	2.1	19	86	13	57	45	2	0	52	1.13
35742061--35742126	25	2.7	24	79	9	62	37	3	1	57	1.23
35745317--35745357	21	1.9	22	90	5	66	46	19	0	34	1.50
35751682--35751932	95	2.7	94	78	4	229	31	13	27	27	1.94
35753481--35753529	11	4.5	11	81	0	53	30	53	6	10	1.59
35759739--35759779	20	2.0	20	100	0	82	53	14	4	26	1.61
35765945--35765972	5	5.6	5	100	0	56	57	0	0	42	0.99
35769233--35769288	25	2.2	25	96	0	103	30	5	23	41	1.76
35777475--35777530	25	2.2	25	96	0	103	30	5	23	41	1.76
35791925--35791998	29	2.6	29	84	4	87	24	31	16	28	1.96
35801253--35801288	18	2.0	18	94	0	63	11	19	19	50	1.77
35811785--35811964	58	3.1	57	82	6	211	27	15	20	37	1.92
35811754--35811986	29	8.0	29	69	11	129	27	15	21	36	1.93
35818035--35818059	13	1.9	13	100	0	50	40	0	24	36	1.55
35818460--35818496	6	6.0	6	93	6	65	64	0	2	32	1.07
35818460--35818498	19	2.1	19	100	0	78	64	0	5	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35818460--35818511	25	2.1	25	85	7	70	65	1	5	26	1.26
35818463--35818511	19	2.6	19	87	6	55	67	2	6	24	1.24
35824863--35825011	38	3.9	38	91	1	228	16	18	31	33	1.93
35824925--35824996	22	3.5	22	66	24	59	15	19	33	31	1.93
35824874--35825054	76	2.4	76	83	1	202	17	18	28	35	1.94
35836436--35836500	20	3.2	20	74	8	60	35	18	23	23	1.96
35844626--35844781	79	2.0	78	88	1	231	33	14	23	28	1.94
35846307--35846457	60	2.5	61	76	5	155	37	15	20	25	1.93
35848902--35848999	40	2.5	40	96	0	178	15	35	15	33	1.89
35848902--35848999	20	4.9	20	69	18	78	15	35	15	33	1.89
35851035--35851163	51	2.5	52	87	3	172	27	15	29	27	1.96
35853506--35853563	28	2.1	28	93	0	98	20	20	36	22	1.95
35860050--35860177	52	2.5	52	89	3	188	28	14	30	27	1.95
35860480--35860519	20	2.0	20	95	0	71	55	12	15	17	1.70
35863128--35863164	19	1.9	19	88	0	56	59	0	32	8	1.27
35864761--35864952	50	3.9	50	79	2	154	22	28	22	26	1.99
35868468--35868681	107	2.0	107	94	1	376	39	23	14	22	1.91
35868893--35868954	30	2.1	30	82	17	76	29	16	8	46	1.75
35869154--35869219	24	2.7	24	73	19	64	37	21	18	22	1.94
35873060--35873252	50	3.7	50	81	6	199	27	22	27	22	1.99
35879645--35879935	50	5.9	50	80	2	284	28	21	27	22	1.99
35879648--35879879	99	2.3	100	82	2	270	27	21	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35879658--35879928	149	1.8	148	81	6	341	28	22	26	22	1.99
35887292--35887477	49	3.8	49	77	5	171	30	22	26	20	1.99
35890740--35890791	27	1.9	27	84	0	68	30	5	11	51	1.61
35892545--35892575	15	2.1	15	100	0	62	12	41	6	38	1.69
35892776--35892845	30	2.2	32	82	9	83	37	0	1	61	1.05
35892813--35892865	20	2.7	20	80	8	63	37	0	3	58	1.16
35892879--35892945	21	3.2	20	73	21	57	44	1	2	50	1.26
35895808--35895849	3	14.0	3	92	0	57	38	35	26	0	1.57
35895788--35895850	15	4.4	15	78	5	69	39	34	23	1	1.65
35900594--35900654	28	2.2	28	82	5	70	31	13	16	39	1.87
35901835--35901880	23	2.0	24	82	4	58	45	0	21	32	1.52
35906718--35906759	7	5.6	7	86	13	57	16	4	0	78	0.91
35906718--35906759	16	2.8	16	92	7	70	16	4	0	78	0.91
35920536--35920589	20	2.7	20	97	0	99	53	3	22	20	1.61
35931778--35931811	15	2.3	15	90	5	52	32	32	5	29	1.81
35944014--35944099	9	9.4	9	80	7	93	24	9	25	40	1.85
35945552--35945684	61	2.3	58	81	12	148	51	6	3	39	1.42
35950207--35950355	42	3.6	41	76	6	147	34	26	16	22	1.95
35950331--35950381	26	2.0	26	92	0	84	25	31	19	23	1.98
35950356--35950504	41	3.6	41	93	0	244	24	24	19	31	1.98
35958300--35958338	20	2.0	20	94	0	69	33	23	10	33	1.88
35978406--35978448	19	2.3	18	88	8	59	58	0	2	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35984217--35984271	23	2.4	22	82	11	58	38	0	7	54	1.28
35987479--35987508	15	1.9	16	93	6	53	66	0	20	13	1.24
35997311--35997373	30	2.3	26	78	21	83	15	14	1	68	1.29
35997319--35997380	30	2.1	30	100	0	124	17	12	3	66	1.38
36009967--36010029	31	2.0	31	87	6	92	47	23	11	17	1.79
36010501--36010532	5	6.4	5	100	0	64	81	0	0	18	0.70
36013631--36013663	17	1.9	17	88	11	50	48	12	0	39	1.40
36015448--36015498	20	2.5	20	80	0	57	43	9	3	43	1.56
36027285--36027327	11	3.8	11	90	3	59	6	16	48	27	1.71
36032082--36032161	33	2.4	33	85	4	117	33	6	13	46	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207