genome.fa.s19.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  139  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42615404--42615452	19	2.9	17	80	16	57	28	14	12	44	1.81
42615431--42615481	26	2.0	26	92	3	86	31	13	7	47	1.72
42615456--42615802	18	20.2	18	65	16	119	31	13	9	44	1.76
42615408--42615494	44	2.0	44	88	4	131	31	14	6	47	1.71
42615398--42615834	17	26.1	16	66	18	119	31	13	9	44	1.76
42627672--42628167	74	6.5	76	88	4	650	27	15	19	36	1.93
42628469--42628497	11	2.5	12	94	5	51	17	0	0	82	0.66
42628469--42628497	6	5.0	6	91	8	51	17	0	0	82	0.66
42628566--42628700	30	4.6	28	73	17	89	29	20	8	42	1.80
42628581--42628697	30	3.9	29	75	14	105	29	21	6	41	1.79
42629080--42629124	22	2.0	22	83	8	56	60	20	15	4	1.52
42629126--42629156	16	2.0	16	93	6	55	77	0	22	0	0.77
42629246--42629324	8	9.0	9	69	24	53	77	0	22	0	0.77
42629250--42629324	26	3.0	25	88	9	109	78	0	21	0	0.75
42629253--42629324	37	1.9	37	86	13	103	79	0	20	0	0.74
42630118--42630168	20	2.6	20	71	3	59	49	9	7	33	1.65
42630138--42630196	30	1.9	31	89	3	93	50	11	5	32	1.61
42630218--42630250	15	2.1	16	88	5	50	24	15	12	48	1.78
42630232--42630622	18	22.2	18	66	18	112	29	14	9	46	1.76
42630250--42630310	26	2.3	26	80	5	70	29	14	6	49	1.69
42630276--42630371	37	2.6	38	79	15	103	35	11	6	46	1.65
42630375--42630623	99	2.5	100	73	12	233	27	14	11	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42630471--42630654	17	11.0	16	70	13	104	31	13	10	44	1.78
42636666--42636707	21	1.9	22	85	9	59	42	9	2	45	1.49
42640899--42640938	19	2.1	19	86	9	55	27	10	12	50	1.72
42642683--42642787	41	2.6	41	83	6	131	26	28	17	27	1.97
42648049--42648076	13	2.2	13	100	0	56	25	14	17	42	1.87
42648075--42648130	26	2.2	26	93	0	94	25	21	28	25	1.99
42648912--42648939	14	2.0	14	100	0	56	35	14	35	14	1.86
42652804--42652846	19	2.2	20	84	12	63	32	18	0	48	1.48
42652926--42653052	44	2.9	44	89	5	202	38	25	14	22	1.91
42653065--42653249	101	1.8	101	82	5	239	32	25	16	24	1.96
42655768--42655797	8	3.8	8	95	0	51	76	3	0	20	0.92
42659904--42659964	28	2.2	28	97	2	115	21	9	14	54	1.69
42662497--42662522	12	2.2	12	100	0	52	19	26	30	23	1.98
42663373--42663505	40	3.3	40	88	4	196	49	27	12	10	1.72
42669858--42669900	19	2.2	20	84	12	63	32	18	0	48	1.48
42669980--42670106	44	2.9	44	89	5	202	38	25	14	22	1.91
42670119--42670303	101	1.8	101	82	5	239	32	25	16	24	1.96
42672821--42672850	8	3.8	8	95	0	51	76	3	0	20	0.92
42677779--42677839	28	2.2	28	97	2	115	21	9	14	54	1.69
42680372--42680397	12	2.2	12	100	0	52	19	26	30	23	1.98
42681249--42681381	40	3.3	40	88	4	196	49	27	12	10	1.72
42692161--42692335	68	2.6	68	83	7	196	25	25	14	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42696234--42696268	16	2.1	17	94	5	63	45	0	8	45	1.34
42704252--42704459	39	5.3	39	76	8	165	32	20	14	32	1.93
42706256--42706301	22	2.1	22	88	8	67	17	2	10	69	1.27
42706881--42706921	16	2.6	16	88	0	55	34	0	7	58	1.26
42706881--42706929	16	3.1	16	84	0	53	32	0	10	57	1.32
42713130--42713154	12	2.1	12	100	0	50	40	0	0	60	0.97
42715784--42715824	21	2.0	22	90	9	68	63	7	21	7	1.45
42723950--42724082	23	5.7	23	67	17	67	60	4	3	31	1.31
42731319--42731560	50	4.7	50	79	4	200	28	20	26	24	1.99
42735361--42735401	21	1.9	22	90	5	66	34	2	4	58	1.32
42735553--42735658	50	2.1	50	85	0	140	27	22	31	18	1.97
42736146--42736387	50	4.7	51	80	4	204	28	20	26	24	1.99
42748719--42749081	41	8.9	41	86	1	469	20	22	28	28	1.98
42749469--42749498	14	2.2	14	94	5	53	26	0	26	46	1.53
42749516--42749569	21	2.5	21	77	14	65	18	0	44	37	1.50
42749523--42749559	7	5.3	7	86	0	56	16	0	54	29	1.43
42749644--42749689	13	3.6	13	75	13	51	13	0	47	39	1.42
42749595--42749760	87	1.9	88	91	1	271	24	0	28	46	1.53
42750872--42750928	21	2.6	23	75	13	66	28	45	1	24	1.63
42756356--42756716	43	8.4	43	84	2	402	22	16	29	32	1.95
42758647--42758737	26	3.5	26	80	5	96	20	27	23	28	1.99
42769266--42769456	51	3.8	51	77	10	203	31	27	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42769264--42769448	101	1.8	102	89	5	295	31	27	17	24	1.97
42769259--42769482	101	2.2	102	82	5	276	30	28	16	25	1.96
42772666--42772784	59	2.0	59	81	3	141	46	8	12	32	1.72
42771995--42773600	469	3.4	468	89	1	2504	40	14	12	33	1.83
42773177--42774028	421	2.0	424	91	1	1370	40	13	12	32	1.83
42774011--42774136	59	2.1	59	80	2	137	49	11	11	28	1.72
42776207--42776233	11	2.5	11	100	0	54	0	11	0	88	0.50
42784862--42784983	39	3.1	39	75	9	124	29	16	21	32	1.95
42787690--42787754	35	1.9	33	84	6	85	47	0	4	47	1.22
42787737--42787763	5	5.4	5	100	0	54	40	0	0	59	0.98
42788725--42788772	25	1.9	25	91	0	78	16	20	22	39	1.92
42788725--42788828	25	4.4	25	76	8	76	16	22	22	39	1.92
42792455--42792481	5	5.4	5	100	0	54	40	0	0	59	0.98
42793444--42793528	25	3.4	25	90	0	125	17	22	22	37	1.94
42795525--42795550	13	2.0	13	100	0	52	53	0	0	46	1.00
42795751--42795839	5	17.8	5	76	15	78	42	1	1	55	1.14
42795752--42795841	27	3.4	25	78	18	94	43	1	1	54	1.14
42801782--42801848	17	3.7	17	70	25	57	28	1	23	46	1.61
42801753--42801888	39	3.5	39	89	2	186	29	3	22	44	1.70
42804245--42804317	17	4.2	16	77	11	56	65	4	1	28	1.19
42809351--42809419	29	2.4	29	83	7	88	36	7	10	46	1.65
42821559--42821668	47	2.3	47	88	0	157	29	13	20	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42826444--42826592	27	5.5	27	84	0	163	35	14	17	32	1.90
42826448--42826592	54	2.7	54	88	2	184	35	14	17	33	1.90
42826443--42826593	81	1.9	81	82	0	194	35	14	17	33	1.90
42835092--42835484	197	2.0	194	96	1	723	33	14	19	32	1.92
42837543--42837591	19	2.5	19	86	3	62	51	0	22	26	1.49
42843939--42843977	17	2.2	19	86	9	55	51	0	7	41	1.31
42848275--42848306	2	16.0	2	100	0	64	0	50	0	50	1.00
42848474--42848522	24	2.0	24	88	0	71	14	14	12	59	1.62
42850693--42850783	10	9.7	9	70	13	58	65	3	2	28	1.20
42850693--42850783	19	4.8	18	75	11	76	65	3	2	28	1.20
42850713--42850791	19	4.2	18	73	16	61	64	2	1	31	1.15
42850710--42850839	59	2.2	59	81	10	153	60	3	3	32	1.30
42851011--42851088	25	3.1	25	69	20	65	33	3	0	62	1.13
42851076--42851124	19	2.6	19	84	9	57	36	2	0	61	1.08
42851159--42851332	91	1.9	91	82	3	217	35	10	16	37	1.83
42851190--42851356	91	1.8	90	82	6	210	35	10	16	37	1.83
42852008--42852049	17	2.4	18	76	4	50	7	14	4	73	1.21
42857600--42857776	92	1.9	95	83	8	236	31	5	6	57	1.47
42857629--42857795	87	1.9	89	82	9	214	30	7	5	56	1.49
42860203--42860243	20	2.0	20	95	0	73	58	9	7	24	1.55
42860503--42860558	21	2.7	21	82	0	67	28	10	33	26	1.90
42860945--42860986	14	3.0	14	76	13	50	35	7	16	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42864884--42864927	6	7.2	6	84	5	61	38	0	59	2	1.10
42865803--42865836	17	2.0	17	100	0	68	52	11	5	29	1.61
42868685--42868716	14	2.4	14	94	5	57	59	18	9	12	1.59
42869311--42869462	80	1.9	81	93	2	263	26	20	5	48	1.71
42872259--42872308	21	2.3	21	83	10	57	54	0	4	42	1.19
42875754--42875801	24	2.0	24	87	0	69	18	12	18	50	1.78
42876008--42876049	12	3.6	12	77	6	50	23	14	21	40	1.90
42876008--42876071	23	2.8	23	85	4	85	29	12	18	39	1.88
42878238--42878271	18	1.9	18	88	5	52	50	0	14	35	1.44
42879209--42879284	39	1.9	39	86	0	107	35	15	31	17	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207