genome.fa.s19.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  17  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5169671--5169705	18	2.0	17	88	5	52	54	0	0	45	0.99
5169629--5169701	27	2.7	27	76	8	76	52	2	0	45	1.15
5169590--5169861	144	1.9	147	94	3	487	46	3	2	47	1.34
5169815--5169849	18	2.0	17	88	5	52	54	0	0	45	0.99
5169835--5170013	55	3.1	54	64	22	128	49	7	2	41	1.43
5169830--5170017	61	3.1	61	68	14	190	49	6	2	41	1.41
5169798--5170020	120	1.9	120	97	0	419	49	6	2	42	1.40
5169935--5169969	18	2.0	17	88	5	52	60	0	0	40	0.97
5170010--5170056	17	2.9	16	78	18	53	46	2	6	44	1.40
5170029--5170062	17	2.0	17	94	0	59	50	0	5	44	1.26
5170095--5170289	93	2.1	92	88	4	286	47	4	4	44	1.41
5178370--5178399	7	4.3	7	100	0	60	0	16	43	40	1.48
5178405--5178472	33	2.0	35	88	8	104	26	10	22	41	1.85
5179275--5179320	6	6.7	7	85	14	53	26	2	10	60	1.41
5179283--5179326	12	3.4	13	84	9	54	25	0	9	65	1.21
5179283--5179326	20	2.2	20	84	11	56	25	0	9	65	1.21
5180095--5180128	16	2.1	16	88	0	50	61	8	0	29	1.26
5185463--5185549	44	2.0	43	86	2	120	33	27	19	19	1.96
5188095--5188145	18	2.7	19	71	14	52	33	11	5	49	1.64
5188328--5188380	21	2.4	20	82	17	61	26	13	5	54	1.60
5188328--5188379	22	2.3	21	84	15	61	25	13	5	55	1.60
5188406--5188836	111	3.9	110	88	2	580	31	15	18	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5196114--5196146	16	2.0	17	88	5	50	39	3	0	57	1.14
5203864--5204014	76	2.0	76	88	0	221	21	34	13	29	1.93
5205701--5205725	10	2.5	10	100	0	50	52	8	0	40	1.31
5205767--5205811	22	2.0	23	82	4	56	28	0	2	68	1.01
5205761--5205810	24	2.0	24	85	11	66	26	0	2	72	0.96
5206187--5206228	21	2.0	22	90	4	68	54	0	0	45	0.99
5211543--5211573	2	15.5	2	100	0	62	48	0	0	51	1.00
5218822--5218857	17	2.1	17	100	0	72	16	27	33	22	1.95
5218839--5218953	51	2.3	51	81	3	133	25	21	19	33	1.97
5220811--5220938	40	3.0	40	85	10	139	60	0	2	36	1.09
5220871--5220956	33	2.7	32	82	15	88	61	0	2	36	1.09
5220818--5220938	44	2.9	39	80	17	120	62	0	2	34	1.08
5221020--5221091	32	2.2	32	100	0	144	11	29	23	36	1.89
5221206--5221322	50	2.3	49	82	2	135	29	23	17	29	1.97
5221509--5221914	200	2.0	200	91	0	659	25	18	12	43	1.85
5221952--5222090	47	3.0	46	81	4	120	26	19	19	34	1.96
5222001--5222091	47	1.9	47	93	0	155	30	18	20	29	1.97
5222562--5222715	49	3.1	49	79	1	137	24	24	16	35	1.95
5222583--5222755	51	3.4	50	78	4	177	24	21	16	36	1.94
5223177--5223349	52	3.4	51	72	8	147	23	22	17	35	1.95
5224855--5225008	77	2.0	77	100	0	308	28	22	16	32	1.96
5225942--5226908	494	2.0	484	86	3	1366	30	18	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5227201--5227353	48	3.2	45	75	11	126	22	24	18	33	1.97
5227216--5227390	51	3.5	51	77	4	169	24	21	18	36	1.95
5227914--5228038	62	2.0	62	100	0	250	34	16	14	35	1.89
5228933--5231233	591	3.9	592	86	5	3186	31	17	14	36	1.90
5229974--5229999	6	4.3	6	100	0	52	46	19	15	19	1.85
5230875--5230996	52	2.4	51	82	9	142	30	19	20	29	1.97
5226426--5231233	590	8.0	588	80	8	5379	30	17	14	36	1.91
5230863--5231601	368	2.0	372	90	1	1164	31	15	16	36	1.90
5231756--5231872	49	2.4	47	76	8	128	23	22	16	37	1.93
5231348--5232443	547	2.0	538	84	5	1451	31	16	14	37	1.89
5231883--5236493	594	7.8	593	84	6	5531	31	17	14	36	1.90
5234086--5234200	48	2.4	48	80	4	124	23	23	16	36	1.94
5235018--5235049	6	5.3	6	100	0	64	46	18	15	18	1.84
5236478--5236600	52	2.3	53	78	8	117	25	21	17	36	1.94
5236454--5238609	588	3.7	587	88	2	3188	30	17	15	36	1.91
5238195--5238362	47	3.5	46	72	10	138	24	22	16	36	1.94
5236454--5238609	590	3.7	585	87	4	3154	30	17	15	36	1.91
5240131--5240262	29	4.5	29	79	7	140	35	20	3	40	1.68
5240133--5240262	30	4.4	29	81	5	138	35	20	3	40	1.68
5240131--5240262	59	2.2	59	82	9	162	35	20	3	40	1.68
5240800--5240866	31	2.2	28	85	15	82	61	1	34	2	1.20
5244229--5244284	24	2.4	24	81	3	69	50	1	5	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5246097--5246465	44	8.5	42	72	12	198	27	20	20	31	1.97
5246224--5246465	46	5.6	44	69	18	152	28	19	20	31	1.97
5258791--5258845	24	2.4	22	75	18	58	50	1	5	41	1.36
5258791--5258845	23	2.4	22	79	8	65	50	1	5	41	1.36
5258996--5259037	3	13.3	3	85	9	57	64	4	2	28	1.26
5261524--5261585	17	3.5	17	73	6	52	38	12	9	38	1.77
5261535--5261580	17	2.6	18	80	16	60	32	15	8	43	1.77
5261640--5261845	17	11.3	18	69	15	84	33	10	12	44	1.75
5261615--5261848	36	6.4	37	73	11	169	34	10	11	43	1.76
5261640--5261683	21	2.1	21	86	0	61	43	9	9	38	1.68
5261616--5261810	37	5.3	36	75	9	171	34	11	11	42	1.77
5261630--5261810	73	2.5	73	81	5	222	32	12	12	43	1.79
5261613--5261849	110	2.1	111	89	3	361	34	10	11	43	1.76
5261915--5261992	17	4.8	16	67	19	54	30	11	12	44	1.78
5261884--5261970	36	2.4	35	85	9	113	32	12	10	44	1.76
5261907--5262090	90	2.0	92	88	4	273	36	11	9	41	1.75
5265493--5265530	4	10.0	4	83	11	53	23	26	0	50	1.50
5265493--5265530	11	3.3	12	85	10	53	23	26	0	50	1.50
5272823--5272874	15	3.2	16	75	8	52	84	3	3	7	0.85
5272823--5272874	8	6.5	8	79	16	54	84	3	3	7	0.85
5273692--5274609	80	11.7	79	85	7	1109	29	16	19	34	1.94
5273692--5274609	155	5.9	153	85	7	1113	29	16	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5274930--5275055	29	4.3	29	79	7	96	32	24	3	39	1.71
5274924--5275055	30	4.5	30	78	6	135	34	23	3	38	1.70
5274924--5275055	59	2.2	59	81	6	160	34	23	3	38	1.70
5275788--5275817	11	2.7	11	94	0	51	80	0	20	0	0.72
5276581--5276807	17	12.8	17	65	19	74	31	11	11	44	1.77
5276632--5276698	19	3.5	19	71	18	59	40	10	10	38	1.74
5276655--5276698	21	2.1	21	86	0	61	43	9	9	38	1.68
5276637--5276886	111	2.2	111	87	4	342	34	9	11	45	1.73
5276759--5276807	19	2.8	17	82	11	62	32	12	14	40	1.83
5276892--5276926	18	1.9	18	88	0	52	25	11	11	51	1.71
5276941--5277019	16	4.6	16	74	13	68	30	13	11	44	1.80
5276967--5277011	17	2.8	16	83	6	54	28	15	15	40	1.88
5279483--5284222	414	11.4	415	90	1	7334	29	23	16	30	1.96
5288026--5288060	17	2.0	18	88	5	54	71	0	28	0	0.86
5288768--5288812	18	2.4	18	82	13	56	37	0	26	35	1.57
5290499--5290558	28	2.2	27	85	8	77	43	3	3	50	1.35
5298949--5298985	4	9.2	4	100	0	74	24	0	24	51	1.49
5311813--5311840	7	4.0	7	100	0	56	14	0	0	85	0.59
5314163--5314237	32	2.4	32	87	10	104	33	0	1	65	1.01
5321331--5321559	120	1.9	121	81	4	275	33	16	15	35	1.90
5322093--5322144	26	2.0	26	88	0	77	61	5	3	28	1.37
5322099--5322151	26	2.2	24	83	10	63	64	5	1	28	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5326212--5326276	32	2.0	32	96	0	121	43	21	4	30	1.73
5329856--5329884	5	5.8	5	100	0	58	82	0	17	0	0.66
5333771--5333903	43	3.1	43	87	0	203	18	15	7	59	1.58
5335084--5335132	18	2.7	18	81	6	64	73	4	4	18	1.15
5337728--5337755	14	2.0	14	100	0	56	35	14	14	35	1.86
5346405--5346449	19	2.2	20	80	11	56	4	33	11	51	1.58
5346413--5346451	19	2.0	20	95	5	71	2	41	10	46	1.51
5346523--5346590	33	2.1	33	94	0	118	8	29	14	47	1.75
5348529--5348822	59	4.9	58	67	14	179	43	3	4	48	1.38
5348649--5348683	18	2.0	17	88	5	52	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207