genome.fa.s19.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  37  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10660900--10660969	21	3.3	21	70	7	70	15	22	18	42	1.88
10664158--10664183	11	2.4	11	100	0	52	84	0	0	15	0.62
10673878--10673949	19	3.7	19	77	14	58	37	0	1	61	1.05
10704038--10704236	109	1.8	109	92	0	335	33	10	16	40	1.82
10711844--10711896	27	2.0	27	100	0	106	30	11	11	47	1.74
10716409--10716476	16	4.2	16	72	10	57	44	2	1	51	1.25
10716517--10716598	36	2.2	36	82	10	103	53	3	3	39	1.36
10718155--10718180	12	2.2	12	100	0	52	73	7	0	19	1.07
10718168--10718215	8	6.2	8	90	4	64	75	12	4	8	1.18
10718156--10718215	7	8.4	7	78	14	52	75	11	3	10	1.17
10718175--10718219	22	2.0	22	95	0	81	73	13	6	6	1.24
10727506--10727593	27	3.3	27	74	3	79	44	17	14	23	1.86
10727998--10728052	28	2.0	27	86	10	76	10	20	34	34	1.87
10736856--10737035	44	4.2	44	67	13	122	27	24	19	28	1.98
10737055--10737590	44	12.2	44	66	13	181	27	24	19	29	1.98
10737055--10737327	132	2.1	132	92	1	458	27	23	19	29	1.98
10737318--10737657	132	2.6	132	93	1	592	27	24	19	28	1.98
10737079--10737547	220	2.1	220	93	0	803	27	24	18	28	1.98
10737186--10737654	88	5.3	88	71	11	305	27	24	19	28	1.98
10769475--10769531	27	2.1	27	96	0	105	45	8	24	21	1.80
10775437--10775497	7	9.8	6	81	15	63	18	4	0	77	0.95
10775438--10775483	23	2.0	24	87	12	69	17	4	0	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10775445--10775476	16	1.9	16	93	6	55	18	0	0	81	0.70
10775444--10775515	14	5.5	13	77	11	60	20	2	1	75	1.01
10780318--10780376	21	2.8	20	75	12	57	47	3	1	47	1.29
10787102--10787180	41	1.9	41	89	0	122	18	7	22	50	1.72
10787466--10787522	10	5.1	10	78	19	51	50	17	0	31	1.46
10787489--10787514	13	2.0	13	100	0	52	46	23	0	30	1.53
10792492--10792526	8	4.5	8	96	3	63	37	0	8	54	1.31
10792499--10792741	121	2.0	121	94	1	425	42	0	5	51	1.30
10797357--10797569	107	2.0	107	98	0	408	35	12	13	38	1.82
10798262--10798300	20	2.0	19	85	5	51	61	17	0	20	1.34
10798471--10798514	19	2.2	20	84	4	54	38	2	4	54	1.33
10816285--10816321	12	2.9	13	81	18	51	8	0	10	81	0.89
10816408--10816470	30	2.1	30	87	0	90	26	1	11	60	1.40
10818904--10821800	579	5.0	578	93	0	4812	35	22	12	29	1.91
10822327--10822449	20	6.2	20	72	6	97	40	20	26	13	1.88
10822343--10822449	39	2.7	39	79	4	117	40	20	27	12	1.88
10827678--10827845	92	1.8	91	88	5	257	18	40	20	20	1.92
10827894--10827922	14	2.1	14	100	0	58	65	20	13	0	1.26
10828110--10828144	18	2.0	18	88	5	54	80	0	11	8	0.92
10829116--10829193	3	26.3	3	73	12	63	33	5	2	58	1.33
10829123--10829188	23	2.9	23	77	6	73	34	4	1	59	1.27
10846124--10847598	29	54.3	29	77	14	1110	33	1	22	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10846173--10847581	52	26.2	51	74	15	893	33	0	22	42	1.61
10846261--10847581	23	49.4	23	73	20	565	33	0	22	43	1.60
10849744--10849777	14	2.3	15	90	5	52	67	2	0	29	1.05
10849975--10850016	22	1.9	22	90	0	66	33	0	33	33	1.58
10849988--10850046	30	2.0	30	96	0	109	32	0	35	32	1.58
10849966--10850068	52	2.0	51	84	1	134	33	0	31	33	1.65
10850018--10850087	22	3.2	22	91	0	113	38	1	27	32	1.66
10854223--10854290	25	2.7	24	79	16	75	50	1	7	41	1.39
10870271--10870318	25	1.9	24	83	8	60	52	2	4	41	1.32
10881131--10881160	11	2.7	11	100	0	60	10	20	16	53	1.71
10885826--10885864	21	1.9	20	84	5	51	46	7	17	28	1.76
10885833--10885875	16	2.8	16	78	3	52	46	9	16	27	1.77
10886011--10886046	16	2.2	17	90	9	58	52	0	0	47	1.00
10886431--10886487	11	5.0	11	75	12	53	35	0	1	63	1.05
10886753--10886803	24	2.1	24	96	0	93	25	7	3	62	1.40
10893254--10893286	9	3.7	9	88	12	50	57	12	0	30	1.35
10897966--10898035	27	2.5	28	90	6	108	40	10	1	48	1.45
10898100--10898168	27	2.6	27	88	0	93	23	30	28	17	1.97
10898455--10898500	3	15.7	3	95	4	85	34	0	0	65	0.93
10898452--10898629	12	14.7	12	68	21	86	34	0	9	55	1.37
10899230--10899274	18	2.5	18	85	0	63	28	4	46	20	1.69
10901654--10901682	14	2.1	14	100	0	58	55	0	6	37	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10902773--10902842	28	2.5	29	93	4	117	48	0	10	41	1.36
10902881--10902928	19	2.5	19	86	0	60	64	8	0	27	1.22
10903609--10903766	10	15.9	10	68	16	80	0	31	0	67	0.95
10903665--10903774	38	2.9	38	90	2	159	0	34	0	64	1.00
10903710--10903783	14	5.1	14	72	22	55	0	31	0	68	0.89
10903704--10903783	34	2.8	28	75	24	85	0	32	0	67	0.91
10903604--10903774	76	2.2	76	82	10	190	1	32	0	66	0.99
10903609--10903786	10	16.7	10	65	17	56	0	31	0	67	0.95
10903744--10903786	22	1.9	23	85	4	61	0	30	0	69	0.88
10903706--10903787	28	2.7	30	75	19	89	0	32	0	67	0.91
10903685--10903800	42	2.9	40	80	10	105	0	36	0	63	0.94
10903835--10903911	27	2.9	27	90	0	109	15	29	27	27	1.96
10903942--10903977	18	2.0	18	88	0	54	11	2	5	80	0.98
10904585--10904625	19	2.2	18	86	4	55	31	4	14	48	1.65
10906486--10906533	21	2.2	21	96	3	87	41	12	6	39	1.68
10909765--10909805	3	13.7	3	100	0	82	68	0	0	31	0.90
10915680--10915723	21	2.1	21	84	16	56	13	20	0	65	1.26
10916139--10916178	17	2.4	17	86	0	53	80	0	7	12	0.91
10917301--10917476	96	1.8	96	91	0	289	34	13	17	34	1.89
10927583--10927660	39	2.0	39	85	5	104	73	0	24	2	0.96
10931819--10931843	12	2.1	12	100	0	50	32	0	0	68	0.90
10940463--10940493	14	2.2	14	100	0	62	19	22	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10944898--10944940	23	2.0	22	86	9	61	41	4	9	44	1.57
10945019--10945089	26	2.6	27	84	8	81	66	5	26	1	1.22
10945938--10946017	25	3.3	25	86	5	112	17	27	18	36	1.94
10945950--10946041	22	4.0	22	80	6	103	18	26	17	38	1.93
10945950--10946041	47	2.0	44	85	6	121	18	26	17	38	1.93
10947596--10947653	20	2.9	19	79	7	62	36	24	10	29	1.88
10949843--10949875	17	1.9	17	88	11	50	45	0	3	51	1.16
10951146--10951214	32	2.2	32	92	5	113	13	18	26	42	1.87
10955962--10956018	29	2.0	29	82	0	69	17	29	26	26	1.97
10956106--10956229	63	2.0	63	86	0	176	25	23	29	21	1.99
10956131--10956269	63	2.2	62	80	5	145	23	25	28	23	1.99
10962144--10962203	30	2.0	31	83	3	77	18	35	1	45	1.60
10962574--10962644	18	3.9	17	70	14	52	40	2	0	56	1.14
10966842--10966980	42	3.3	41	76	15	124	46	15	17	19	1.84
10966864--10966922	21	2.8	21	71	19	68	45	13	20	20	1.84
10966864--10967007	42	3.4	41	79	3	144	45	15	18	20	1.86
10968852--10968925	28	2.6	28	79	10	87	28	12	27	32	1.92
10970403--10970451	13	4.2	12	80	17	50	77	4	0	18	0.92
10970403--10970451	6	8.3	6	76	19	50	77	4	0	18	0.92
10970561--10970622	31	2.0	32	84	9	83	27	14	20	37	1.92
10972393--10972432	21	1.9	21	85	10	55	52	2	35	10	1.48
10972461--10972517	3	19.0	3	100	0	114	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10975135--10975216	18	4.4	19	76	13	50	34	14	3	47	1.62
10975169--10975217	18	2.7	18	83	0	71	40	16	0	42	1.48
10982395--10982442	24	2.0	24	95	0	87	31	16	10	41	1.82
10987759--10987855	22	4.4	21	74	14	72	15	26	19	38	1.92
10990239--10990268	15	1.9	16	93	6	53	26	3	0	70	1.03
10990602--10990635	16	2.1	16	94	0	59	35	0	0	64	0.94
10993598--10993665	32	2.1	32	83	0	82	30	10	10	48	1.71
10993872--10993923	24	2.2	24	85	0	68	38	3	7	50	1.50
10998246--10998297	24	2.2	24	89	0	77	38	3	5	51	1.44
10998967--10999018	26	2.0	26	100	0	104	42	7	11	38	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207