genome.fa.s19.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  122  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36994051--36994239	33	5.6	33	69	18	147	35	25	20	18	1.95
36993945--36994130	102	1.8	102	89	2	293	32	29	19	18	1.96
36994051--36994165	60	1.9	60	94	0	203	35	27	20	16	1.94
37003279--37003367	35	2.5	35	88	0	142	28	22	24	24	2.00
37006435--37006488	28	2.0	27	82	10	65	31	1	1	64	1.14
37006457--37006510	18	2.9	19	78	13	58	29	3	0	66	1.09
37006466--37006507	19	2.1	20	86	8	59	28	2	0	69	1.01
37006456--37006516	28	2.2	28	85	5	79	26	3	0	70	1.02
37007679--37007781	41	2.5	41	87	3	145	37	2	0	59	1.13
37007730--37007781	10	4.9	11	81	13	65	44	1	0	53	1.11
37007721--37007781	31	2.0	31	93	6	106	42	1	0	55	1.09
37014219--37014261	15	2.6	17	85	14	72	41	4	16	37	1.69
37017342--37017391	24	2.0	25	96	3	93	16	0	16	68	1.22
37021351--37021408	9	6.4	9	85	0	80	25	12	22	39	1.89
37021346--37021408	27	2.3	27	88	2	99	25	12	22	39	1.89
37029042--37030874	914	2.0	914	100	0	3666	32	12	15	38	1.85
37039084--37039135	14	3.6	14	72	23	54	63	0	5	30	1.18
37045638--37045690	16	3.2	16	72	15	54	22	18	18	39	1.92
37045641--37045702	33	1.9	32	87	9	90	22	17	17	41	1.90
37049241--37049277	15	2.5	15	95	0	65	43	5	2	48	1.40
37051069--37051122	25	2.3	25	78	18	62	51	7	3	37	1.48
37055316--37055358	18	2.4	18	96	0	77	37	16	11	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37062686--37062739	25	2.1	26	83	10	67	61	1	5	31	1.30
37074289--37074542	5	50.8	5	95	0	418	38	19	2	39	1.64
37079143--37079183	19	2.2	19	86	8	57	31	7	7	53	1.56
37081508--37081547	21	1.9	21	84	0	53	27	15	7	50	1.70
37092639--37092685	17	2.8	17	79	20	62	57	6	2	34	1.36
37092639--37092719	17	4.7	16	71	25	51	55	3	3	37	1.35
37095968--37096024	23	2.5	24	86	13	84	40	8	38	12	1.74
37097813--37097856	23	1.9	23	81	9	54	47	6	13	31	1.69
37101205--37101241	18	2.1	18	100	0	74	32	10	5	51	1.60
37103031--37103095	32	2.1	32	97	2	123	30	9	12	47	1.72
37103635--37103685	12	4.4	12	79	18	63	74	9	15	0	1.06
37103625--37103682	22	2.7	22	92	5	93	74	10	15	0	1.08
37105414--37105481	34	2.0	34	94	0	118	25	16	19	39	1.91
37117689--37117745	28	2.0	28	89	0	87	40	22	14	22	1.90
37124536--37124738	112	1.8	112	89	0	316	30	15	14	39	1.88
37126088--37126296	43	4.9	43	83	5	244	19	19	28	33	1.96
37128945--37128994	17	2.9	17	81	0	64	64	0	26	10	1.25
37128929--37128994	34	1.9	34	84	3	87	62	0	28	9	1.26
37135884--37135939	27	2.1	26	93	3	94	14	8	39	37	1.77
37135884--37135949	27	2.5	27	87	7	82	15	12	37	34	1.84
37138503--37138625	50	2.4	50	80	2	147	34	13	13	38	1.85
37140761--37140820	16	3.6	16	78	14	59	65	1	23	10	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37140777--37140820	18	2.5	17	75	7	52	65	2	22	9	1.32
37142630--37142664	19	1.9	17	88	11	52	31	8	5	54	1.54
37142754--37142876	50	2.4	50	79	5	140	34	13	14	37	1.86
37145041--37145115	27	2.9	25	80	7	96	38	4	18	38	1.70
37151563--37151592	14	2.1	15	93	6	53	20	6	30	43	1.77
37168866--37168921	14	3.7	15	73	19	53	60	0	23	16	1.35
37168886--37168943	18	3.4	17	76	13	57	65	1	24	8	1.30
37168871--37168953	33	2.5	33	86	1	114	61	2	24	12	1.42
37175432--37175476	20	2.2	21	96	4	83	44	8	17	28	1.79
37175439--37175484	20	2.3	20	92	0	74	50	8	17	23	1.74
37177568--37177686	43	2.8	43	81	10	154	26	17	25	31	1.97
37185174--37185203	15	2.1	15	93	6	53	3	20	0	76	0.92
37190558--37190795	50	4.8	50	81	1	203	23	27	19	29	1.98
37197822--37197981	43	3.8	41	77	12	128	25	18	26	29	1.98
37197814--37197981	85	2.0	85	81	11	202	25	17	26	30	1.97
37198060--37198092	17	1.9	17	100	0	66	39	12	6	42	1.67
37199003--37199033	16	1.9	16	100	0	62	25	12	25	35	1.92
37199083--37199133	26	1.9	27	92	4	86	33	17	17	31	1.94
37204974--37205089	54	2.1	54	79	0	124	25	20	32	20	1.97
37217034--37217066	16	2.0	17	88	5	50	45	0	6	48	1.27
37220108--37220165	19	3.4	19	68	26	65	65	1	8	24	1.30
37220108--37220173	32	2.1	32	100	0	132	66	3	9	21	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37227455--37227580	50	2.5	50	96	0	225	26	25	11	36	1.90
37236090--37236119	11	2.6	12	94	5	53	60	3	0	36	1.14
37236090--37236139	23	2.2	23	82	7	57	60	2	0	38	1.09
37237143--37237193	24	2.1	25	92	3	86	5	3	35	54	1.43
37237665--37237871	44	4.8	43	70	7	132	28	20	19	30	1.97
37237712--37237871	85	1.9	85	80	5	189	29	21	20	29	1.98
37237581--37237871	129	2.3	128	85	1	386	27	20	20	31	1.97
37238316--37240220	44	43.7	44	68	14	630	29	20	17	32	1.96
37238280--37238693	98	4.3	96	66	21	249	29	20	16	33	1.95
37238599--37240267	129	12.9	129	95	0	2928	29	21	17	32	1.96
37240861--37240906	23	2.0	23	100	0	92	34	17	8	39	1.80
37241535--37241566	7	4.7	7	92	7	57	15	15	0	68	1.21
37241538--37241566	13	2.2	13	100	0	58	13	13	0	72	1.13
37242491--37242611	40	3.0	39	75	9	118	10	10	6	71	1.29
37242510--37242581	24	3.1	23	71	16	67	8	6	8	76	1.16
37242556--37242623	12	5.8	12	75	13	52	13	7	7	72	1.28
37242553--37242599	22	2.2	22	84	3	60	12	6	4	76	1.12
37243129--37243173	23	2.0	23	95	0	81	24	20	26	28	1.99
37244094--37244144	26	2.2	24	78	21	56	60	5	0	33	1.21
37247849--37247889	20	2.0	22	85	9	59	48	4	19	26	1.69
37249093--37249229	30	4.6	30	79	3	143	40	24	13	20	1.89
37249093--37249229	60	2.3	60	82	6	163	40	24	13	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37249240--37249312	30	2.4	30	83	0	92	39	27	13	19	1.89
37249164--37249314	76	2.0	76	97	0	284	39	25	13	21	1.89
37249333--37249506	61	2.9	61	80	3	188	39	25	14	19	1.90
37251327--37251384	25	2.3	25	81	0	80	31	22	20	25	1.98
37259558--37259781	40	5.7	40	81	7	215	25	28	20	25	1.99
37259558--37259781	79	2.8	78	78	9	204	25	28	20	25	1.99
37259713--37259790	40	1.9	41	82	10	97	26	28	20	24	1.99
37267137--37267361	40	5.7	40	81	6	215	25	28	21	25	1.99
37267293--37267370	40	1.9	41	82	10	97	26	28	20	24	1.99
37271548--37271651	54	1.9	54	98	0	199	25	25	16	33	1.96
37276810--37276888	37	2.1	37	88	0	113	25	30	18	25	1.98
37277006--37277371	47	7.7	47	96	0	633	30	30	8	31	1.86
37277233--37277311	25	3.3	25	64	10	74	34	27	5	32	1.79
37287294--37287338	16	2.8	16	84	15	65	22	13	2	62	1.42
37292466--37292538	29	2.5	29	95	0	128	45	13	9	31	1.76
37293616--37293668	28	1.9	28	88	3	81	26	24	26	22	2.00
37293763--37293813	26	2.0	26	88	0	75	39	19	21	19	1.93
37293976--37294329	27	13.1	27	83	5	389	17	18	20	44	1.87
37299729--37299755	13	2.1	13	100	0	54	29	0	7	62	1.22
37299854--37300025	50	3.5	49	86	1	218	26	20	30	22	1.98
37302533--37302570	17	2.2	18	85	4	51	63	2	23	10	1.39
37302532--37302588	29	2.0	29	82	6	71	61	1	26	10	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37308267--37308313	19	2.5	19	100	0	94	57	4	6	31	1.43
37311995--37312037	21	2.0	21	90	0	68	32	4	37	25	1.77
37311984--37312034	21	2.7	18	72	21	50	27	3	37	31	1.75
37311992--37312044	21	2.5	21	81	3	61	35	3	33	26	1.75
37317276--37317364	23	3.9	23	96	0	160	30	28	4	37	1.77
37323710--37323735	12	2.2	12	100	0	52	46	15	7	30	1.74
37327712--37327810	23	4.3	23	94	0	171	33	25	21	20	1.97
37330418--37330543	49	2.6	49	80	5	123	30	25	15	28	1.95
37332497--37332578	38	2.2	37	80	8	94	30	20	1	47	1.58
37332708--37332875	23	7.3	23	93	0	255	32	23	20	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207