genome.fa.s19.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  154  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47279289--47279357	16	4.2	16	92	3	120	36	37	1	24	1.65
47279289--47279357	33	2.1	32	94	2	120	36	37	1	24	1.65
47279600--47279721	31	3.6	32	75	14	93	55	1	0	41	1.15
47279658--47279703	22	2.1	22	87	0	65	52	2	0	45	1.13
47279600--47279691	11	8.6	11	66	23	54	55	1	1	42	1.14
47282437--47282477	21	2.0	21	85	9	57	36	2	4	56	1.34
47282824--47282861	9	4.2	9	93	0	58	28	10	23	36	1.88
47285939--47285994	30	1.9	28	86	13	78	76	5	10	7	1.14
47286867--47286912	23	2.0	24	86	4	67	47	0	21	30	1.51
47288252--47288293	21	2.2	20	87	12	61	50	4	19	26	1.67
47292104--47292140	5	7.4	5	91	8	58	40	0	0	59	0.97
47292094--47292142	21	2.3	23	76	20	61	46	0	0	53	1.00
47292269--47292324	30	1.9	28	86	13	78	76	5	10	7	1.14
47293023--47293052	3	10.0	3	92	0	51	36	0	0	63	0.95
47293408--47293503	39	2.5	39	80	6	108	20	23	28	27	1.99
47293367--47293500	39	3.4	38	72	12	103	22	20	27	29	1.99
47298879--47298930	25	2.1	26	82	13	65	46	23	0	30	1.53
47301623--47301724	43	2.4	43	90	3	152	19	32	28	19	1.96
47304205--47304238	17	2.0	17	94	0	59	47	11	14	26	1.79
47309346--47309376	13	2.4	13	94	0	53	64	0	3	32	1.09
47312475--47312550	22	3.4	23	81	17	81	26	26	1	46	1.61
47312476--47312550	11	6.7	12	72	18	72	26	26	1	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47312512--47312609	51	1.9	51	83	4	126	25	23	3	47	1.66
47313751--47313790	7	5.7	7	100	0	80	27	0	15	57	1.38
47314411--47314450	18	2.2	18	86	0	53	17	30	7	45	1.76
47314985--47315690	21	32.5	21	77	11	590	44	31	0	23	1.60
47314994--47315690	43	16.0	42	76	14	598	44	31	1	22	1.60
47315045--47315120	27	3.0	27	77	14	99	39	40	0	19	1.52
47315132--47315186	28	2.0	28	96	0	101	41	36	0	21	1.54
47315135--47315184	15	3.5	15	76	20	61	42	36	0	22	1.54
47315350--47315394	13	3.4	13	87	6	63	40	42	2	15	1.59
47315349--47315389	14	3.0	14	89	7	66	41	41	2	14	1.59
47318547--47319113	126	4.5	125	84	2	706	30	22	16	30	1.96
47318547--47319113	251	2.3	250	87	1	787	30	22	16	30	1.96
47321176--47321208	17	1.9	17	100	0	66	36	0	3	60	1.12
47322012--47322053	21	2.0	21	100	0	84	47	4	0	47	1.23
47326484--47326560	19	3.7	21	76	13	68	41	16	3	37	1.67
47326484--47326541	22	2.6	22	81	7	64	41	17	5	36	1.72
47326520--47326573	19	2.8	19	88	0	90	37	16	7	38	1.77
47326783--47326826	22	2.0	22	100	0	88	45	9	9	36	1.68
47329935--47329988	24	2.2	25	84	12	69	72	3	9	14	1.24
47335242--47335310	25	2.8	26	82	10	83	33	21	21	23	1.97
47335234--47335347	25	4.7	24	76	15	76	33	20	22	23	1.97
47344926--47344970	20	2.3	19	85	7	63	75	2	0	22	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47345760--47345861	51	2.0	51	98	0	195	44	12	11	31	1.79
47346713--47346779	30	2.2	31	78	7	75	37	2	1	58	1.23
47348532--47348568	7	5.6	7	93	3	51	62	5	2	29	1.31
47349039--47349064	3	8.7	3	100	0	52	69	0	0	30	0.89
47352110--47352155	24	1.9	24	82	8	58	13	41	6	39	1.70
47352178--47352207	14	2.1	14	93	0	51	10	43	10	36	1.72
47353329--47353368	20	2.0	20	90	0	62	55	12	5	27	1.58
47353727--47353772	23	1.9	25	86	8	69	54	13	2	30	1.50
47354788--47354826	19	2.1	19	85	9	53	28	5	17	48	1.68
47362425--47362471	20	2.4	20	85	3	60	46	0	4	48	1.21
47363508--47363561	16	3.5	16	70	10	58	42	5	27	24	1.76
47363505--47363563	30	2.0	30	96	0	109	38	5	30	25	1.77
47364027--47364363	50	6.7	50	83	3	381	29	15	25	28	1.96
47364027--47364369	100	3.4	100	86	2	429	30	15	25	28	1.96
47367531--47367651	9	13.8	9	68	21	53	54	1	2	41	1.23
47367530--47367581	17	3.0	16	76	15	50	55	0	0	44	0.99
47367534--47367665	19	7.3	19	68	14	57	55	1	3	39	1.27
47367530--47367702	71	2.4	71	87	5	235	50	2	3	43	1.31
47367679--47367748	20	3.4	20	73	25	65	41	1	1	55	1.17
47367768--47367959	90	2.1	91	82	4	239	48	4	3	43	1.39
47367869--47367898	10	3.0	10	100	0	60	60	0	0	40	0.97
47372293--47372321	6	4.8	6	100	0	58	17	31	34	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47407691--47407777	45	1.9	45	88	4	131	42	2	20	34	1.65
47407780--47407823	6	7.2	6	92	2	52	59	0	25	15	1.37
47407781--47407823	12	3.5	12	90	3	68	58	0	25	16	1.38
47407781--47407823	18	2.3	19	84	4	61	58	0	25	16	1.38
47419995--47420040	15	3.0	15	87	3	56	56	23	2	17	1.52
47436362--47436700	44	7.8	44	74	9	282	28	23	18	29	1.98
47436406--47436568	89	1.8	88	82	5	211	24	26	20	28	1.99
47438139--47438163	11	2.3	11	100	0	50	8	8	0	84	0.79
47439027--47439108	28	2.9	28	83	3	92	12	6	9	71	1.29
47443170--47443199	10	3.0	10	100	0	60	50	20	0	30	1.49
47443293--47443332	21	1.9	21	85	10	55	55	5	12	27	1.58
47443303--47443332	11	2.8	11	95	5	53	56	0	13	30	1.37
47447082--47447116	18	2.0	17	88	5	52	54	0	0	45	0.99
47447062--47447674	120	5.1	120	93	0	967	50	5	1	42	1.35
47447320--47447356	16	2.2	17	86	13	51	54	0	2	43	1.14
47447412--47447452	13	3.2	12	80	12	55	58	0	0	41	0.98
47447440--47447475	18	2.0	18	100	0	72	66	0	0	33	0.92
47447563--47447597	18	2.0	17	94	5	61	57	0	0	42	0.99
47447068--47447673	241	2.5	240	91	1	964	50	4	1	42	1.35
47449414--47449443	13	2.3	13	94	0	51	30	13	6	50	1.67
47457231--47457290	3	20.0	3	80	0	66	60	3	5	31	1.35
47457233--47457284	21	2.5	21	90	0	77	59	1	5	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47458924--47459206	92	3.1	95	71	11	298	31	20	15	33	1.93
47458970--47459399	45	9.5	45	69	12	175	30	20	17	32	1.95
47458825--47459217	181	2.2	181	87	0	554	31	19	16	32	1.94
47459002--47459356	137	2.6	137	88	1	525	30	19	17	32	1.95
47458687--47459536	318	2.7	318	86	1	1106	30	20	16	32	1.95
47459183--47459490	92	3.4	91	74	9	331	29	19	18	32	1.96
47459229--47459537	96	3.3	95	75	10	343	29	20	18	31	1.96
47459190--47459540	181	1.9	181	95	0	630	29	19	18	32	1.96
47464281--47464315	18	1.9	18	94	0	61	62	8	8	20	1.49
47472203--47472259	12	4.8	12	80	0	60	61	7	3	28	1.39
47474169--47474243	34	2.2	34	90	0	114	40	25	14	20	1.90
47480873--47480918	21	2.2	21	100	0	92	45	8	4	41	1.55
47481025--47481065	19	2.2	19	100	0	82	43	14	4	36	1.67
47500418--47500462	16	2.8	16	82	0	54	60	2	4	33	1.29
47500840--47501028	93	2.0	92	83	4	236	41	19	7	31	1.80
47501050--47501095	19	2.3	21	85	7	60	73	0	6	19	1.04
47501119--47501159	17	2.3	18	87	4	66	46	0	4	48	1.23
47501407--47501460	27	2.0	26	82	10	65	27	5	1	64	1.26
47501465--47501501	19	1.9	19	88	0	56	27	5	2	64	1.28
47501361--47501498	56	2.4	56	81	8	165	28	7	4	59	1.44
47501596--47501793	91	2.2	91	89	3	310	31	11	20	36	1.88
47505813--47505868	27	2.1	27	100	0	112	37	3	30	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47524319--47524555	50	4.7	50	86	2	305	26	22	29	21	1.99
47532069--47532169	51	2.0	51	94	0	175	24	15	25	33	1.95
47534341--47534368	12	2.3	12	100	0	56	28	42	21	7	1.79
47536728--47536793	30	2.2	30	83	0	87	18	16	37	27	1.92
47537801--47537839	20	2.0	20	89	0	60	43	20	25	10	1.83
47544389--47544495	53	2.0	53	100	0	214	28	16	13	41	1.86
47549463--47549533	20	3.6	19	77	7	61	32	16	35	15	1.91
47550725--47551570	423	2.0	424	94	0	1487	40	16	8	35	1.78
47552010--47552045	17	2.1	17	100	0	72	44	16	11	27	1.82
47552287--47552315	12	2.5	12	94	5	51	24	6	10	58	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207