genome.fa.s19.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  181  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55462635--55462670	7	5.3	7	96	3	65	61	11	0	27	1.30
55465311--55465354	11	3.8	11	80	11	52	34	0	2	63	1.07
55467298--55467457	35	4.7	34	71	7	128	28	15	27	29	1.96
55467330--55467490	33	4.8	32	73	8	115	29	14	26	29	1.96
55467263--55467493	101	2.3	101	95	0	408	31	15	24	29	1.95
55467493--55467546	24	2.2	25	87	9	85	48	7	22	22	1.75
55470845--55471038	97	2.0	97	97	0	370	27	28	18	25	1.98
55494901--55494993	46	2.0	46	97	0	177	37	17	20	24	1.93
55512293--55512331	15	2.5	15	79	4	51	53	2	2	41	1.28
55512547--55512606	21	2.9	21	87	5	68	56	3	1	38	1.26
55512561--55512634	26	3.0	26	84	11	95	54	4	1	40	1.28
55515241--55515274	12	2.8	12	86	0	50	55	17	17	8	1.66
55515376--55515488	55	2.1	55	100	0	226	50	14	12	23	1.76
55516752--55516815	26	2.5	26	97	2	121	37	3	0	59	1.13
55518102--55518183	43	1.9	43	87	7	123	30	4	10	53	1.57
55534075--55534113	19	2.0	20	85	5	53	41	2	0	56	1.13
55537313--55537337	4	6.2	4	100	0	50	24	0	0	76	0.80
55537681--55537725	22	2.0	22	100	0	90	35	8	0	55	1.31
55537796--55537863	27	2.5	27	95	0	118	27	30	26	14	1.95
55537906--55538038	8	16.5	8	67	23	75	69	0	30	0	0.94
55537915--55538057	21	7.3	18	68	20	74	67	0	32	0	0.91
55537918--55538052	5	27.4	5	71	14	68	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55537922--55538108	81	2.4	77	84	9	236	67	0	32	0	0.91
55537956--55538107	39	3.7	41	83	9	184	69	0	30	0	0.89
55537933--55538107	86	2.1	82	84	11	223	69	0	30	0	0.88
55538582--55539031	161	2.8	160	72	11	388	49	8	12	29	1.71
55541257--55541312	11	5.0	11	74	20	53	39	10	14	35	1.81
55541243--55541312	34	2.1	34	97	0	131	38	11	11	38	1.78
55544228--55544350	66	1.9	66	83	8	164	45	8	5	39	1.59
55544400--55544443	3	14.7	3	95	0	79	65	31	2	0	1.05
55544510--55544548	20	2.0	21	85	10	55	66	10	0	23	1.22
55544697--55544755	27	2.2	27	87	0	82	15	28	28	27	1.96
55544814--55544883	26	2.5	28	86	11	92	48	1	10	40	1.45
55546160--55546375	113	1.9	112	81	2	263	35	18	22	24	1.96
55546431--55547029	115	5.2	113	75	9	495	30	18	23	28	1.97
55546431--55547029	229	2.6	225	82	6	677	30	18	23	28	1.97
55547747--55547810	24	2.7	24	81	13	62	48	0	1	50	1.10
55548434--55548527	44	2.1	44	92	0	152	22	34	9	34	1.87
55550152--55550213	19	3.4	19	66	20	60	32	3	1	62	1.20
55550154--55550241	35	2.5	35	96	0	158	32	4	2	60	1.30
55550261--55550338	9	8.7	9	73	16	63	44	15	1	38	1.55
55550256--55550334	16	5.0	16	76	13	74	44	16	1	37	1.56
55550400--55550463	23	3.0	22	72	21	64	46	20	1	31	1.60
55550588--55550767	9	19.2	9	69	20	70	50	17	1	30	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55550595--55550728	12	11.2	12	66	16	73	50	17	1	30	1.55
55550524--55550728	95	2.2	95	96	0	374	52	17	2	27	1.57
55550644--55550767	25	4.6	25	71	18	88	52	16	1	29	1.53
55550549--55550702	43	3.4	43	70	15	128	55	16	1	25	1.52
55550737--55550772	16	2.2	16	95	0	63	52	19	0	27	1.46
55556223--55556291	21	3.3	21	77	0	66	36	20	39	4	1.72
55556740--55556989	42	5.9	42	85	3	290	23	23	22	30	1.99
55558495--55558566	31	2.3	29	86	13	92	48	9	19	22	1.77
55563186--55563262	27	2.9	27	92	0	118	25	27	31	15	1.96
55564537--55564565	14	2.1	14	100	0	58	37	6	0	55	1.27
55564982--55565058	27	2.9	27	94	0	127	14	31	28	25	1.95
55565122--55565190	28	2.5	29	86	6	99	49	1	8	40	1.43
55569152--55569187	18	2.1	18	89	5	56	52	16	0	30	1.44
55569387--55569530	42	3.4	40	83	10	164	28	27	15	28	1.97
55573421--55573479	31	1.9	31	96	0	109	44	18	5	32	1.72
55574980--55575046	29	2.2	32	84	7	86	50	0	2	46	1.16
55575046--55575094	25	2.0	25	83	0	62	61	2	2	34	1.19
55578808--55579015	42	4.9	43	83	5	226	32	27	15	24	1.95
55583933--55583996	16	3.9	16	75	16	69	59	0	1	39	1.07
55586701--55586742	22	1.9	22	85	9	59	28	0	0	71	0.86
55588918--55588981	17	3.6	17	74	15	67	28	12	12	46	1.78
55588910--55588980	36	2.0	36	94	0	124	26	12	14	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55589175--55589269	48	2.0	48	91	0	154	18	16	22	42	1.89
55594254--55594348	48	2.0	48	93	0	163	18	17	23	40	1.92
55595418--55595481	31	2.1	31	91	5	103	57	0	0	42	0.98
55595445--55595513	11	6.6	11	70	18	58	57	0	0	42	0.98
55595419--55595558	40	3.5	40	92	2	210	60	0	1	37	1.11
55606296--55606336	21	2.0	21	90	0	64	29	21	29	19	1.98
55614416--55614462	15	3.1	15	90	0	58	55	0	10	34	1.35
55614430--55614462	12	2.8	12	95	0	57	57	0	9	33	1.30
55615999--55616368	87	4.3	87	74	11	251	27	21	20	31	1.98
55616039--55616368	44	7.6	44	74	10	247	26	21	21	30	1.98
55617578--55617606	1	29.0	1	100	0	58	0	0	0	100	0.00
55624705--55624771	29	2.3	29	97	0	125	11	25	19	43	1.85
55629322--55629368	15	3.1	15	90	0	58	55	0	10	34	1.35
55629336--55629368	12	2.8	12	95	0	57	57	0	9	33	1.30
55631680--55631966	124	2.3	124	90	0	448	32	17	20	29	1.95
55635062--55635359	49	6.5	49	77	12	269	45	7	4	42	1.51
55635152--55635219	31	2.2	31	89	2	102	41	7	5	45	1.56
55635056--55635443	129	3.0	128	86	7	513	45	7	3	43	1.50
55635286--55635437	79	1.9	78	94	2	270	42	7	3	46	1.50
55635106--55635493	127	3.0	126	86	7	491	45	7	3	42	1.51
55635364--55635535	49	3.5	49	95	1	310	45	8	3	42	1.52
55635062--55635554	176	2.8	177	96	1	900	45	8	3	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55635364--55635544	97	1.9	94	89	6	285	46	8	3	41	1.51
55635941--55635983	18	2.4	18	88	0	59	44	9	27	18	1.80
55637822--55637896	22	3.4	22	94	0	132	48	0	26	25	1.52
55637822--55637897	10	7.0	10	78	15	80	48	0	26	25	1.51
55639723--55639816	33	2.7	34	77	6	100	50	1	8	40	1.40
55639715--55639815	35	3.2	31	77	14	91	50	0	7	40	1.38
55639850--55639886	19	1.9	19	88	0	56	62	2	2	32	1.23
55641030--55641054	13	1.9	13	100	0	50	4	0	32	64	1.12
55641697--55641859	44	3.7	44	82	1	218	26	23	20	29	1.99
55641669--55641864	89	2.2	89	87	0	293	26	23	20	29	1.99
55651274--55651534	41	6.4	41	76	4	249	14	22	22	39	1.91
55651273--55651534	82	3.2	82	91	1	400	14	23	22	38	1.92
55653983--55654019	10	3.7	10	92	0	65	43	0	13	43	1.44
55654677--55654713	10	3.7	10	92	0	65	43	0	13	43	1.44
55654781--55654832	27	1.9	27	84	0	68	40	0	11	48	1.40
55656021--55656057	11	3.4	11	96	0	65	37	2	5	54	1.38
55656331--55656408	38	2.1	38	92	0	129	50	7	2	39	1.45
55656379--55656777	9	43.2	9	69	21	104	49	11	0	39	1.43
55656308--55656811	34	14.7	33	69	21	194	48	11	0	39	1.45
55656405--55656486	22	4.0	22	74	18	95	48	9	0	41	1.36
55656364--55656807	56	7.8	56	74	20	297	48	10	0	39	1.44
55656319--55656805	94	5.2	93	78	16	520	48	11	0	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55656488--55656542	22	2.6	21	88	11	85	49	10	0	40	1.38
55656553--55656598	22	2.1	22	95	0	83	47	10	0	41	1.38
55656624--55656656	16	2.1	16	100	0	66	45	24	0	30	1.53
55656669--55656737	22	2.9	22	78	17	75	49	11	0	39	1.39
55656703--55656747	13	3.4	13	77	17	56	51	11	0	37	1.38
55656792--55657009	9	26.2	9	69	17	114	43	16	2	37	1.61
55656797--55656829	16	2.1	16	100	0	66	45	24	0	30	1.53
55656792--55656933	25	5.6	25	71	14	80	42	16	2	38	1.61
55656792--55656933	34	4.2	33	70	15	94	42	16	2	38	1.61
55656885--55657004	16	7.9	16	69	19	96	45	17	1	35	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207